{"id":"https://openalex.org/W4297094730","doi":"https://doi.org/10.1109/tvcg.2022.3209408","title":"Polyphony: an Interactive Transfer Learning Framework for Single-Cell Data Analysis","display_name":"Polyphony: an Interactive Transfer Learning Framework for Single-Cell Data Analysis","publication_year":2022,"publication_date":"2022-09-26","ids":{"openalex":"https://openalex.org/W4297094730","doi":"https://doi.org/10.1109/tvcg.2022.3209408","pmid":"https://pubmed.ncbi.nlm.nih.gov/36155452"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2022.3209408","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209408","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09903604.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09903604.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073000458","display_name":"Furui Cheng","orcid":"https://orcid.org/0000-0003-2329-6126"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":true,"raw_author_name":"Furui Cheng","raw_affiliation_strings":["Hong Kong University of Science and Technology, China"],"affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, China","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086065061","display_name":"Mark S. Keller","orcid":"https://orcid.org/0000-0003-3003-874X"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark S Keller","raw_affiliation_strings":["Harvard University, USA"],"affiliations":[{"raw_affiliation_string":"Harvard University, USA","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091466289","display_name":"Huamin Qu","orcid":"https://orcid.org/0000-0002-3344-9694"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Huamin Qu","raw_affiliation_strings":["Hong Kong University of Science and Technology, China"],"affiliations":[{"raw_affiliation_string":"Hong Kong University of Science and Technology, China","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066335313","display_name":"Nils Gehlenborg","orcid":"https://orcid.org/0000-0003-0327-8297"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nils Gehlenborg","raw_affiliation_strings":["Harvard University, USA"],"affiliations":[{"raw_affiliation_string":"Harvard University, USA","institution_ids":["https://openalex.org/I2801851002"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100609686","display_name":"Qianwen Wang","orcid":"https://orcid.org/0000-0003-1728-4102"},"institutions":[{"id":"https://openalex.org/I2801851002","display_name":"Harvard University Press","ror":"https://ror.org/006v7bf86","country_code":"US","type":"other","lineage":["https://openalex.org/I136199984","https://openalex.org/I2801851002"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qianwen Wang","raw_affiliation_strings":["Harvard University, USA"],"affiliations":[{"raw_affiliation_string":"Harvard University, USA","institution_ids":["https://openalex.org/I2801851002"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5073000458"],"corresponding_institution_ids":["https://openalex.org/I200769079"],"apc_list":null,"apc_paid":null,"fwci":1.4756,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.82030368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"29","issue":"1","first_page":"591","last_page":"601"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9477999806404114,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8789559602737427},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.7068905830383301},{"id":"https://openalex.org/keywords/polyphony","display_name":"Polyphony","score":0.6485493779182434},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6209821701049805},{"id":"https://openalex.org/keywords/transfer-of-learning","display_name":"Transfer of learning","score":0.6081441640853882},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.5541290640830994},{"id":"https://openalex.org/keywords/complement","display_name":"Complement (music)","score":0.5191454291343689},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5069103837013245},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4457879960536957},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.429068386554718},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4245555102825165},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4123242497444153},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3206470012664795}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8789559602737427},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.7068905830383301},{"id":"https://openalex.org/C128979739","wikidata":"https://www.wikidata.org/wiki/Q179465","display_name":"Polyphony","level":2,"score":0.6485493779182434},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6209821701049805},{"id":"https://openalex.org/C150899416","wikidata":"https://www.wikidata.org/wiki/Q1820378","display_name":"Transfer of learning","level":2,"score":0.6081441640853882},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.5541290640830994},{"id":"https://openalex.org/C112313634","wikidata":"https://www.wikidata.org/wiki/Q7886648","display_name":"Complement (music)","level":5,"score":0.5191454291343689},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5069103837013245},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4457879960536957},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.429068386554718},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4245555102825165},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4123242497444153},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3206470012664795},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000078332","descriptor_name":"Data Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/tvcg.2022.3209408","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209408","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09903604.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:36155452","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36155452","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10039961","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10039961","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10039961/pdf/nihms-1846034.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Vis Comput Graph","raw_type":"Text"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-121498","is_oa":false,"landing_page_url":"https://repository.hkust.edu.hk/ir/Record/1783.1-121498","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1109/tvcg.2022.3209408","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209408","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09903604.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3937140210","display_name":null,"funder_award_id":"R33CA263666","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4911117681","display_name":null,"funder_award_id":"T32HG002295","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6414905909","display_name":null,"funder_award_id":"HG0022","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6617082519","display_name":null,"funder_award_id":"OT2OD02667","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6988551844","display_name":null,"funder_award_id":"UM1HG011536","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8388340808","display_name":null,"funder_award_id":"HG011536","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4297094730.pdf","grobid_xml":"https://content.openalex.org/works/W4297094730.grobid-xml"},"referenced_works_count":73,"referenced_works":["https://openalex.org/W1559379489","https://openalex.org/W1970569592","https://openalex.org/W1980817660","https://openalex.org/W2042789810","https://openalex.org/W2101234009","https://openalex.org/W2127058057","https://openalex.org/W2130410032","https://openalex.org/W2142493242","https://openalex.org/W2161381700","https://openalex.org/W2168573280","https://openalex.org/W2168705291","https://openalex.org/W2188365844","https://openalex.org/W2464824038","https://openalex.org/W2472063172","https://openalex.org/W2523369352","https://openalex.org/W2523620612","https://openalex.org/W2526262591","https://openalex.org/W2551194178","https://openalex.org/W2561429117","https://openalex.org/W2612519453","https://openalex.org/W2794521141","https://openalex.org/W2800392236","https://openalex.org/W2803766319","https://openalex.org/W2804604520","https://openalex.org/W2896967904","https://openalex.org/W2915848182","https://openalex.org/W2922020904","https://openalex.org/W2944525406","https://openalex.org/W2949177718","https://openalex.org/W2949637707","https://openalex.org/W2952838175","https://openalex.org/W2962073995","https://openalex.org/W2964256412","https://openalex.org/W2964691289","https://openalex.org/W2967177832","https://openalex.org/W2972458663","https://openalex.org/W2972845140","https://openalex.org/W2973221207","https://openalex.org/W2979911343","https://openalex.org/W2984472267","https://openalex.org/W2989807288","https://openalex.org/W2995755016","https://openalex.org/W3002417351","https://openalex.org/W3005127469","https://openalex.org/W3016787828","https://openalex.org/W3024643080","https://openalex.org/W3030350595","https://openalex.org/W3034223044","https://openalex.org/W3045861853","https://openalex.org/W3099559583","https://openalex.org/W3117464799","https://openalex.org/W3129866267","https://openalex.org/W3159800610","https://openalex.org/W3164692211","https://openalex.org/W3178987458","https://openalex.org/W3196650609","https://openalex.org/W3202786858","https://openalex.org/W3203654614","https://openalex.org/W3204925778","https://openalex.org/W4210587306","https://openalex.org/W4213108508","https://openalex.org/W4220975008","https://openalex.org/W4225598893","https://openalex.org/W4225985932","https://openalex.org/W4226020779","https://openalex.org/W4234236334","https://openalex.org/W4295312788","https://openalex.org/W4399648721","https://openalex.org/W6675354045","https://openalex.org/W6687045409","https://openalex.org/W6751715993","https://openalex.org/W6762199457","https://openalex.org/W6766978945"],"related_works":["https://openalex.org/W2411659965","https://openalex.org/W2387677326","https://openalex.org/W4200063482","https://openalex.org/W2357575019","https://openalex.org/W2370117122","https://openalex.org/W2360603947","https://openalex.org/W2371528275","https://openalex.org/W2375454309","https://openalex.org/W2374135200","https://openalex.org/W2349392800"],"abstract_inverted_index":{"Reference-based":[0],"cell-type":[1],"annotation":[2,97],"can":[3],"significantly":[4],"reduce":[5],"time":[6],"and":[7,45,85,95,122,136,167,185],"effort":[8],"in":[9,148,188],"single-cell":[10,191],"analysis":[11],"by":[12,26,87],"transferring":[13],"labels":[14],"from":[15,39,48],"a":[16,20,92,115,132],"previously-annotated":[17],"dataset":[18],"to":[19,33,74,117,138,141],"new":[21],"dataset.":[22],"However,":[23],"label":[24],"transfer":[25,70],"end-to-end":[27],"computational":[28,80,120],"methods":[29],"is":[30,83,158],"challenging":[31],"due":[32],"the":[34,54,119],"entanglement":[35],"of":[36,56,134,155,182],"technical":[37],"(e.g.,":[38,47],"different":[40,49],"sequencing":[41],"batches":[42],"or":[43,144],"techniques)":[44],"biological":[46],"cellular":[50],"microenvironments)":[51],"variations,":[52],"only":[53],"first":[55],"which":[57],"must":[58],"be":[59],"removed.":[60],"To":[61],"address":[62],"this":[63,156],"issue,":[64],"we":[65],"propose":[66],"Polyphony,":[67],"an":[68],"interactive":[69],"learning":[71],"(ITL)":[72],"framework,":[73],"complement":[75],"biologists'":[76],"knowledge":[77],"with":[78,102,169],"advanced":[79],"methods.":[81],"Polyphony":[82],"motivated":[84],"guided":[86],"domain":[88],"experts'":[89],"needs":[90],"for":[91,126],"controllable,":[93],"interactive,":[94],"algorithm-assisted":[96],"process,":[98],"identified":[99],"through":[100,160],"interviews":[101,168],"seven":[103],"biologists.":[104,171],"We":[105,129],"introduce":[106],"anchors,":[107,146],"i.e.,":[108],"analogous":[109],"cell":[110,150],"populations":[111],"across":[112],"datasets,":[113],"as":[114],"paradigm":[116],"explain":[118],"process":[121],"collect":[123],"user":[124],"feedback":[125],"model":[127],"improvement.":[128],"further":[130],"design":[131],"set":[133],"visualizations":[135],"interactions":[137],"empower":[139],"users":[140],"add,":[142],"delete,":[143],"modify":[145],"resulting":[147],"refined":[149],"type":[151],"annotations.":[152],"The":[153,172],"effectiveness":[154],"approach":[157],"demonstrated":[159],"quantitative":[161],"experiments,":[162],"two":[163,170],"hypothetical":[164],"use":[165],"cases,":[166],"results":[173],"show":[174],"that":[175],"our":[176],"anchor-based":[177],"ITL":[178],"method":[179],"takes":[180],"advantage":[181],"both":[183],"human":[184],"machine":[186],"intelligence":[187],"annotating":[189],"massive":[190],"datasets.":[192]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":3},{"year":2021,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
