{"id":"https://openalex.org/W4301392884","doi":"https://doi.org/10.1109/tvcg.2022.3209407","title":"GenoREC: A Recommendation System for Interactive Genomics Data Visualization","display_name":"GenoREC: A Recommendation System for Interactive Genomics Data Visualization","publication_year":2022,"publication_date":"2022-10-03","ids":{"openalex":"https://openalex.org/W4301392884","doi":"https://doi.org/10.1109/tvcg.2022.3209407","pmid":"https://pubmed.ncbi.nlm.nih.gov/36191105"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2022.3209407","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209407","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09908148.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09908148.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5073188354","display_name":"Aditeya Pandey","orcid":"https://orcid.org/0000-0003-3216-9997"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Aditeya Pandey","raw_affiliation_strings":["Northeastern University, MA, US"],"affiliations":[{"raw_affiliation_string":"Northeastern University, MA, US","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060888358","display_name":"Sehi L\u2019Yi","orcid":"https://orcid.org/0000-0001-7720-2848"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sehi L'Yi","raw_affiliation_strings":["Harvard Medical School, MA, US"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, MA, US","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100609686","display_name":"Qianwen Wang","orcid":"https://orcid.org/0000-0003-1728-4102"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qianwen Wang","raw_affiliation_strings":["Harvard Medical School, MA, US"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, MA, US","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065943691","display_name":"Michelle A. Borkin","orcid":"https://orcid.org/0000-0002-8016-355X"},"institutions":[{"id":"https://openalex.org/I12912129","display_name":"Northeastern University","ror":"https://ror.org/04t5xt781","country_code":"US","type":"education","lineage":["https://openalex.org/I12912129"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michelle A. Borkin","raw_affiliation_strings":["Northeastern University, MA, US"],"affiliations":[{"raw_affiliation_string":"Northeastern University, MA, US","institution_ids":["https://openalex.org/I12912129"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066335313","display_name":"Nils Gehlenborg","orcid":"https://orcid.org/0000-0003-0327-8297"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nils Gehlenborg","raw_affiliation_strings":["Harvard Medical School, MA, US"],"affiliations":[{"raw_affiliation_string":"Harvard Medical School, MA, US","institution_ids":["https://openalex.org/I136199984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5073188354"],"corresponding_institution_ids":["https://openalex.org/I12912129"],"apc_list":null,"apc_paid":null,"fwci":2.4499,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.90536393,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"29","issue":"1","first_page":"570","last_page":"580"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9853000044822693,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10538","display_name":"Data Mining Algorithms and Applications","score":0.9768000245094299,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8179256916046143},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.726595938205719},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.6848311424255371},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.47595927119255066},{"id":"https://openalex.org/keywords/information-visualization","display_name":"Information visualization","score":0.46316421031951904},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4322690963745117},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4162607789039612},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3446493446826935},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.33798813819885254},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.32667237520217896},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2400071620941162},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1502763330936432}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8179256916046143},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.726595938205719},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.6848311424255371},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.47595927119255066},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.46316421031951904},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4322690963745117},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4162607789039612},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3446493446826935},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.33798813819885254},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.32667237520217896},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2400071620941162},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1502763330936432},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tvcg.2022.3209407","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209407","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09908148.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:36191105","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/36191105","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:10067538","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/10067538","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC10067538/pdf/nihms-1846026.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Vis Comput Graph","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1109/tvcg.2022.3209407","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2022.3209407","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9991003/09908148.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.5,"display_name":"Quality Education"}],"awards":[{"id":"https://openalex.org/G660615265","display_name":null,"funder_award_id":"U24CA237617","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6988551844","display_name":null,"funder_award_id":"UM1HG011536","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7375032004","display_name":null,"funder_award_id":"R01HG011773","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8388340808","display_name":null,"funder_award_id":"HG011536","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8819146647","display_name":null,"funder_award_id":"U01CA200059","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4301392884.pdf","grobid_xml":"https://content.openalex.org/works/W4301392884.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W195533127","https://openalex.org/W884650706","https://openalex.org/W1961845056","https://openalex.org/W1972985967","https://openalex.org/W2017756939","https://openalex.org/W2021341670","https://openalex.org/W2023758372","https://openalex.org/W2024290096","https://openalex.org/W2053690843","https://openalex.org/W2054901814","https://openalex.org/W2072420737","https://openalex.org/W2073800769","https://openalex.org/W2117470435","https://openalex.org/W2128016314","https://openalex.org/W2132881639","https://openalex.org/W2151122362","https://openalex.org/W2152922709","https://openalex.org/W2158804744","https://openalex.org/W2159367517","https://openalex.org/W2168783124","https://openalex.org/W2200988052","https://openalex.org/W2330947483","https://openalex.org/W2341539131","https://openalex.org/W2414655327","https://openalex.org/W2514091133","https://openalex.org/W2592959293","https://openalex.org/W2610226709","https://openalex.org/W2753171348","https://openalex.org/W2795226127","https://openalex.org/W2795915595","https://openalex.org/W2809924942","https://openalex.org/W2886887279","https://openalex.org/W2888425844","https://openalex.org/W2888611489","https://openalex.org/W2901027836","https://openalex.org/W2901303766","https://openalex.org/W2944634251","https://openalex.org/W2955816935","https://openalex.org/W2956831428","https://openalex.org/W2960979937","https://openalex.org/W2961556342","https://openalex.org/W2964101465","https://openalex.org/W2969821795","https://openalex.org/W2976898289","https://openalex.org/W3080506318","https://openalex.org/W3092968263","https://openalex.org/W3093051694","https://openalex.org/W3093612437","https://openalex.org/W3195409786","https://openalex.org/W3202569757","https://openalex.org/W3203255635","https://openalex.org/W3203796924","https://openalex.org/W4226087462","https://openalex.org/W4226277180","https://openalex.org/W4226351013","https://openalex.org/W4297458793","https://openalex.org/W4301347335","https://openalex.org/W4317780717","https://openalex.org/W6607976765","https://openalex.org/W6753589473","https://openalex.org/W6779872201","https://openalex.org/W6781186852","https://openalex.org/W6784638317","https://openalex.org/W6802962953"],"related_works":["https://openalex.org/W2105200106","https://openalex.org/W1574055964","https://openalex.org/W2104025928","https://openalex.org/W2295030662","https://openalex.org/W4225274103","https://openalex.org/W2923661510","https://openalex.org/W2006240110","https://openalex.org/W1938514595","https://openalex.org/W2751110224","https://openalex.org/W2520625499"],"abstract_inverted_index":{"Interpretation":[0],"of":[1,10,14,20,97,166,212],"genomics":[2,24,51,156,234],"data":[3,25,58,76,98,115,124,168],"is":[4,39],"critically":[5],"reliant":[6],"on":[7,65,122,163],"the":[8,94,123,175,210,232],"application":[9,190],"a":[11,31,79,147,164,180,188],"wide":[12],"range":[13],"visualization":[15,21,37,91,116,130,149],"tools.":[16],"A":[17],"large":[18],"number":[19],"techniques":[22],"for":[23,34,93,152,183,204],"and":[26,67,100,125,169,187,201,228],"different":[27],"analysis":[28,101,170,235],"tasks":[29],"pose":[30],"significant":[32],"challenge":[33],"analysts:":[35],"which":[36],"technique":[38],"most":[40],"likely":[41],"to":[42,136,158,194,230],"help":[43],"them":[44,87,203],"generate":[45],"insights":[46],"into":[47],"their":[48,60,106,167,196,205],"data?":[49],"Since":[50],"analysts":[52,157,193],"typically":[53],"have":[54],"limited":[55],"training":[56],"in":[57,105,113],"visualization,":[59],"choices":[61,92],"are":[62,133,222,240],"often":[63],"based":[64,121,162],"trial":[66],"error":[68],"or":[69],"guided":[70],"by":[71,117,225],"technical":[72],"details,":[73],"such":[74],"as":[75],"formats":[77],"that":[78,178,191,217,221],"specific":[80],"tool":[81],"can":[82],"load.":[83],"This":[84],"approach":[85],"prevents":[86],"from":[88],"making":[89],"effective":[90,160],"many":[95],"combinations":[96],"types":[99],"questions":[102],"they":[103],"encounter":[104],"work.":[107],"Visualization":[108],"recommendation":[109,131,150,176],"systems":[110,132],"assist":[111],"non-experts":[112],"creating":[114],"recommending":[118],"appropriate":[119,185],"visualizations":[120,161,186,220],"task":[126],"characteristics.":[127],"However,":[128],"existing":[129],"not":[134],"designed":[135,145],"handle":[137],"domain-specific":[138],"problems.":[139],"To":[140],"address":[141,231],"these":[142],"challenges,":[143],"we":[144,173,208],"GenoREC,":[146],"novel":[148],"system":[151],"genomics.":[153],"GenoREC":[154,218],"enables":[155,192],"select":[159],"description":[165],"tasks.":[171],"Here,":[172],"present":[174,209],"model":[177],"uses":[179],"knowledge-based":[181],"method":[182],"choosing":[184],"web":[189],"input":[195],"requirements,":[197],"explore":[198],"recommended":[199],"visualizations,":[200],"export":[202],"usage.":[206],"Furthermore,":[207],"results":[211],"two":[213],"user":[214],"studies":[215],"demonstrating":[216],"recommends":[219],"both":[223],"accepted":[224],"domain":[226],"experts":[227],"suited":[229],"given":[233],"problem.":[236],"All":[237],"supplemental":[238],"materials":[239],"available":[241],"at":[242],"https://osf.io/y73pt/.":[243]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":12},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
