{"id":"https://openalex.org/W3203109225","doi":"https://doi.org/10.1109/tvcg.2021.3114766","title":"Loon: Using Exemplars to Visualize Large-Scale Microscopy Data","display_name":"Loon: Using Exemplars to Visualize Large-Scale Microscopy Data","publication_year":2021,"publication_date":"2021-09-29","ids":{"openalex":"https://openalex.org/W3203109225","doi":"https://doi.org/10.1109/tvcg.2021.3114766","mag":"3203109225","pmid":"https://pubmed.ncbi.nlm.nih.gov/34587022"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2021.3114766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2021.3114766","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Devin Lange","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Devin Lange","raw_affiliation_strings":["University of Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Eddie Polanco","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eddie Polanco","raw_affiliation_strings":["University of Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Robert Judson-Torres","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert Judson-Torres","raw_affiliation_strings":["University of Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Thomas Zangle","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas Zangle","raw_affiliation_strings":["University of Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"last","author":{"id":null,"display_name":"Alexander Lex","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexander Lex","raw_affiliation_strings":["University of Utah, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah, USA","institution_ids":["https://openalex.org/I223532165"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":null,"apc_paid":null,"fwci":0.9964,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.75852167,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"28","issue":"1","first_page":"248","last_page":"258"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11897","display_name":"Digital Holography and Microscopy","score":0.8366000056266785,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11897","display_name":"Digital Holography and Microscopy","score":0.8366000056266785,"subfield":{"id":"https://openalex.org/subfields/3107","display_name":"Atomic and Molecular Physics, and Optics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.04699999839067459,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10857","display_name":"Advanced Electron Microscopy Techniques and Applications","score":0.016100000590085983,"subfield":{"id":"https://openalex.org/subfields/1315","display_name":"Structural Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.8148000240325928},{"id":"https://openalex.org/keywords/preprocessor","display_name":"Preprocessor","score":0.754800021648407},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6373999714851379},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5335999727249146},{"id":"https://openalex.org/keywords/data-pre-processing","display_name":"Data pre-processing","score":0.39750000834465027},{"id":"https://openalex.org/keywords/data-quality","display_name":"Data quality","score":0.36579999327659607},{"id":"https://openalex.org/keywords/quality","display_name":"Quality (philosophy)","score":0.35760000348091125}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8170999884605408},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.8148000240325928},{"id":"https://openalex.org/C34736171","wikidata":"https://www.wikidata.org/wiki/Q918333","display_name":"Preprocessor","level":2,"score":0.754800021648407},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6373999714851379},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5335999727249146},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.48669999837875366},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41510000824928284},{"id":"https://openalex.org/C10551718","wikidata":"https://www.wikidata.org/wiki/Q5227332","display_name":"Data pre-processing","level":2,"score":0.39750000834465027},{"id":"https://openalex.org/C24756922","wikidata":"https://www.wikidata.org/wiki/Q1757694","display_name":"Data quality","level":3,"score":0.36579999327659607},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3637000024318695},{"id":"https://openalex.org/C2779530757","wikidata":"https://www.wikidata.org/wiki/Q1207505","display_name":"Quality (philosophy)","level":2,"score":0.35760000348091125},{"id":"https://openalex.org/C14669888","wikidata":"https://www.wikidata.org/wiki/Q4014850","display_name":"Creative visualization","level":3,"score":0.3450999855995178},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.322299987077713},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.31049999594688416},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.304500013589859},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.29649999737739563},{"id":"https://openalex.org/C59740354","wikidata":"https://www.wikidata.org/wiki/Q2737866","display_name":"Scientific visualization","level":3,"score":0.27059999108314514},{"id":"https://openalex.org/C52622490","wikidata":"https://www.wikidata.org/wiki/Q1026626","display_name":"Feature extraction","level":2,"score":0.25850000977516174},{"id":"https://openalex.org/C185578843","wikidata":"https://www.wikidata.org/wiki/Q10609775","display_name":"Information visualization","level":3,"score":0.2563999891281128}],"mesh":[{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001331","descriptor_name":"Automation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tvcg.2021.3114766","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2021.3114766","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:34587022","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34587022","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G592701239","display_name":null,"funder_award_id":"W81XWH-19-10065","funder_id":"https://openalex.org/F4320310050","funder_display_name":"University of Utah"}],"funders":[{"id":"https://openalex.org/F4320310050","display_name":"University of Utah","ror":"https://ror.org/03r0ha626"},{"id":"https://openalex.org/F4320312217","display_name":"Huntsman Cancer Foundation","ror":"https://ror.org/03v7tx966"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1926682734","https://openalex.org/W1963884621","https://openalex.org/W1965799446","https://openalex.org/W1970569592","https://openalex.org/W1976443465","https://openalex.org/W2029054052","https://openalex.org/W2037093857","https://openalex.org/W2068408009","https://openalex.org/W2088175939","https://openalex.org/W2107554012","https://openalex.org/W2109657057","https://openalex.org/W2125907229","https://openalex.org/W2135415614","https://openalex.org/W2138195009","https://openalex.org/W2139442812","https://openalex.org/W2155405213","https://openalex.org/W2161307069","https://openalex.org/W2168705291","https://openalex.org/W2176372762","https://openalex.org/W2286660955","https://openalex.org/W2289495393","https://openalex.org/W2296493840","https://openalex.org/W2467414813","https://openalex.org/W2515839014","https://openalex.org/W2604749705","https://openalex.org/W2791743745","https://openalex.org/W2793263492","https://openalex.org/W2818473048","https://openalex.org/W2883244140","https://openalex.org/W2950237981","https://openalex.org/W2968412929","https://openalex.org/W2972845140","https://openalex.org/W3002194360","https://openalex.org/W4253525579","https://openalex.org/W4253763636","https://openalex.org/W4254300737"],"related_works":[],"abstract_inverted_index":{"Which":[0],"drug":[1,84],"is":[2,45,53,121,129,180],"most":[3],"promising":[4],"for":[5,13,39,55,58,82,132,136,144,183,191],"a":[6,32,79,112,141,153,192],"cancer":[7,19],"patient?":[8],"A":[9],"new":[10,142],"microscopy-based":[11],"approach":[12,143],"measuring":[14],"the":[15,36,70,106,157,163,169],"mass":[16],"of":[17,117,127],"individual":[18],"cells":[20,128,150],"treated":[21],"with":[22,168],"different":[23],"drugs":[24,188],"promises":[25],"to":[26,156],"answer":[27],"this":[28,74],"question":[29],"in":[30],"only":[31],"few":[33],"hours.":[34],"However,":[35,123],"analysis":[37],"pipeline":[38],"extracting":[40],"data":[41,86,97,137,165],"from":[42,48],"these":[43],"images":[44,107,118],"still":[46],"far":[47],"complete":[49],"automation:":[50],"human":[51],"intervention":[52],"necessary":[54],"quality":[56,133],"control":[57,134],"preprocessing":[59],"steps":[60],"such":[61,98],"as":[62,99],"segmentation,":[63],"adjusting":[64],"filters,":[65],"removing":[66],"noise,":[67],"and":[68,102,119,135,146,173,176],"analyzing":[69,83],"result.":[71],"To":[72],"address":[73],"workflow,":[75],"we":[76],"developed":[77],"Loon,":[78],"visualization":[80,166,172],"tool":[81],"screening":[85],"based":[87],"on":[88],"quantitative":[89],"phase":[90],"microscopy":[91],"imaging.":[92],"Loon":[93,179],"visualizes":[94],"both":[95,131],"derived":[96,164],"growth":[100],"rates":[101],"imaging":[103],"data.":[104,159],"Since":[105],"are":[108,189],"collected":[109],"automatically":[110],"at":[111],"large":[113],"scale,":[114],"manual":[115],"inspection":[116],"segmentations":[120],"infeasible.":[122],"reviewing":[124],"representative":[125,148],"samples":[126],"essential,":[130],"analysis.":[138],"We":[139],"introduce":[140],"choosing":[145],"visualizing":[147],"exemplar":[149,171],"that":[151],"retain":[152],"close":[154],"connection":[155],"low-level":[158],"By":[160],"tightly":[161],"integrating":[162],"capabilities":[167],"novel":[170],"providing":[174],"selection":[175],"filtering":[177],"capabilities,":[178],"well":[181],"suited":[182],"making":[184],"decisions":[185],"about":[186],"which":[187],"suitable":[190],"specific":[193],"patient.":[194]},"counts_by_year":[{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2021-10-11T00:00:00"}
