{"id":"https://openalex.org/W3020934283","doi":"https://doi.org/10.1109/tvcg.2020.3030415","title":"<i>Modeling in the Time of COVID-19:</i> Statistical and Rule-based Mesoscale Models","display_name":"<i>Modeling in the Time of COVID-19:</i> Statistical and Rule-based Mesoscale Models","publication_year":2020,"publication_date":"2020-10-15","ids":{"openalex":"https://openalex.org/W3020934283","doi":"https://doi.org/10.1109/tvcg.2020.3030415","mag":"3020934283","pmid":"https://pubmed.ncbi.nlm.nih.gov/33055034"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2020.3030415","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2020.3030415","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9340023/09224865.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/2945/9340023/09224865.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102922863","display_name":"Ngan Nguyen","orcid":"https://orcid.org/0000-0003-0054-801X"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Ngan Nguyen","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009473523","display_name":"Ond\u0159ej Strnad","orcid":"https://orcid.org/0000-0002-8077-4692"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Ondrej Strnad","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005537804","display_name":"Tobias Klein","orcid":"https://orcid.org/0000-0001-9455-7587"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]},{"id":"https://openalex.org/I4210167330","display_name":"Biographics (United States)","ror":"https://ror.org/01jtkws96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210167330"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Tobias Klein","raw_affiliation_strings":["TU Wien and Nanographics GmbH"],"affiliations":[{"raw_affiliation_string":"TU Wien and Nanographics GmbH","institution_ids":["https://openalex.org/I4210167330","https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100604593","display_name":"Deng Luo","orcid":"https://orcid.org/0000-0003-4610-8730"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Deng Luo","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014905815","display_name":"Ruwayda Alharbi","orcid":"https://orcid.org/0000-0003-2544-417X"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Ruwayda Alharbi","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076768552","display_name":"Peter Wonka","orcid":"https://orcid.org/0000-0003-0627-9746"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Peter Wonka","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051680646","display_name":"Martina Maritan","orcid":"https://orcid.org/0000-0001-9901-1153"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Martina Maritan","raw_affiliation_strings":["Scripps Research Institute, US"],"affiliations":[{"raw_affiliation_string":"Scripps Research Institute, US","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088614523","display_name":"Peter Mindek","orcid":"https://orcid.org/0000-0002-9434-5952"},"institutions":[{"id":"https://openalex.org/I4210167330","display_name":"Biographics (United States)","ror":"https://ror.org/01jtkws96","country_code":"US","type":"company","lineage":["https://openalex.org/I4210167330"]},{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Peter Mindek","raw_affiliation_strings":["TU Wien and Nanographics GmbH"],"affiliations":[{"raw_affiliation_string":"TU Wien and Nanographics GmbH","institution_ids":["https://openalex.org/I4210167330","https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080082986","display_name":"Ludovic Autin","orcid":"https://orcid.org/0000-0002-2197-191X"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ludovic Autin","raw_affiliation_strings":["Scripps Research Institute, US"],"affiliations":[{"raw_affiliation_string":"Scripps Research Institute, US","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040337866","display_name":"David S. Goodsell","orcid":"https://orcid.org/0000-0002-5932-2130"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David S. Goodsell","raw_affiliation_strings":["Scripps Research Institute, US"],"affiliations":[{"raw_affiliation_string":"Scripps Research Institute, US","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022294742","display_name":"Ivan Viola","orcid":"https://orcid.org/0000-0003-4248-6574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Ivan Viola","raw_affiliation_strings":["King Abdullah University of Science and Technology (KAUST), Saudi Arabia"],"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology (KAUST), Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5102922863"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":null,"apc_paid":null,"fwci":4.7426,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.94735432,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"27","issue":"2","first_page":"722","last_page":"732"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9843999743461609,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9646999835968018,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7502852082252502},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6638362407684326},{"id":"https://openalex.org/keywords/mesoscale-meteorology","display_name":"Mesoscale meteorology","score":0.5437785387039185},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.4953378736972809},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.4930426776409149},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.478933185338974},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38029608130455017},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.37815093994140625}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7502852082252502},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6638362407684326},{"id":"https://openalex.org/C40382383","wikidata":"https://www.wikidata.org/wiki/Q2399824","display_name":"Mesoscale meteorology","level":2,"score":0.5437785387039185},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.4953378736972809},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.4930426776409149},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.478933185338974},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38029608130455017},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.37815093994140625},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C49204034","wikidata":"https://www.wikidata.org/wiki/Q52139","display_name":"Climatology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":"Q000821","qualifier_name":"virology","is_major_topic":false},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000648","qualifier_name":"ultrastructure","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1109/tvcg.2020.3030415","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2020.3030415","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9340023/09224865.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:33055034","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33055034","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:arXiv.org:2005.01804","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2005.01804","pdf_url":"https://arxiv.org/pdf/2005.01804","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:pubmedcentral.nih.gov:8642830","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8642830","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Vis Comput Graph","raw_type":"Text"},{"id":"pmh:oai:repository.kaust.edu.sa:10754/662970","is_oa":false,"landing_page_url":"http://hdl.handle.net/10754/662970","pdf_url":null,"source":{"id":"https://openalex.org/S4306401596","display_name":"King Abdullah University of Science and Technology Repository (King Abdullah University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I71920554","host_organization_name":"King Abdullah University of Science and Technology","host_organization_lineage":["https://openalex.org/I71920554"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1109/tvcg.2020.3030415","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tvcg.2020.3030415","pdf_url":"https://ieeexplore.ieee.org/ielx7/2945/9340023/09224865.pdf","source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2413311131","display_name":null,"funder_award_id":"GM120604","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G287846484","display_name":null,"funder_award_id":"BAS/1/1680-01-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G2968349150","display_name":null,"funder_award_id":"OSR-2019-CPF-410","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G6345853531","display_name":null,"funder_award_id":"unknown","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7487607621","display_name":null,"funder_award_id":"R01-GM120604","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7774594785","display_name":null,"funder_award_id":"OSR-2019-CPF-4108","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3020934283.pdf","grobid_xml":"https://content.openalex.org/works/W3020934283.grobid-xml"},"referenced_works_count":99,"referenced_works":["https://openalex.org/W255996521","https://openalex.org/W1477460761","https://openalex.org/W1515381348","https://openalex.org/W1564690864","https://openalex.org/W1578208063","https://openalex.org/W1949393069","https://openalex.org/W1968625395","https://openalex.org/W1974035453","https://openalex.org/W1974479059","https://openalex.org/W1988663970","https://openalex.org/W1992920740","https://openalex.org/W1995808589","https://openalex.org/W2000690667","https://openalex.org/W2006329201","https://openalex.org/W2010769244","https://openalex.org/W2026687385","https://openalex.org/W2036338493","https://openalex.org/W2043334098","https://openalex.org/W2053448121","https://openalex.org/W2056672534","https://openalex.org/W2059786927","https://openalex.org/W2063831812","https://openalex.org/W2068333895","https://openalex.org/W2071657576","https://openalex.org/W2078290150","https://openalex.org/W2093301923","https://openalex.org/W2106306206","https://openalex.org/W2115167726","https://openalex.org/W2117088012","https://openalex.org/W2117741646","https://openalex.org/W2124026197","https://openalex.org/W2126364917","https://openalex.org/W2141959911","https://openalex.org/W2152013121","https://openalex.org/W2154069299","https://openalex.org/W2169113748","https://openalex.org/W2177731497","https://openalex.org/W2244686166","https://openalex.org/W2291468715","https://openalex.org/W2303100661","https://openalex.org/W2471222198","https://openalex.org/W2484603661","https://openalex.org/W2512790134","https://openalex.org/W2565253567","https://openalex.org/W2591786348","https://openalex.org/W2605158478","https://openalex.org/W2612725110","https://openalex.org/W2615147949","https://openalex.org/W2751463909","https://openalex.org/W2751857862","https://openalex.org/W2753862885","https://openalex.org/W2790185928","https://openalex.org/W2804822363","https://openalex.org/W2807744179","https://openalex.org/W2898326065","https://openalex.org/W2908647676","https://openalex.org/W2943206967","https://openalex.org/W2962927829","https://openalex.org/W2965779895","https://openalex.org/W2969277937","https://openalex.org/W2976481502","https://openalex.org/W2987259367","https://openalex.org/W2987451562","https://openalex.org/W3003217347","https://openalex.org/W3007643904","https://openalex.org/W3009335299","https://openalex.org/W3010201685","https://openalex.org/W3012820174","https://openalex.org/W3013186573","https://openalex.org/W3013533831","https://openalex.org/W3013753700","https://openalex.org/W3015034780","https://openalex.org/W3016038607","https://openalex.org/W3021183041","https://openalex.org/W3023376619","https://openalex.org/W3024517232","https://openalex.org/W3024602798","https://openalex.org/W3035950190","https://openalex.org/W3036529319","https://openalex.org/W3037157441","https://openalex.org/W3037454598","https://openalex.org/W3040801746","https://openalex.org/W3041175406","https://openalex.org/W3042332408","https://openalex.org/W3045149055","https://openalex.org/W3049142173","https://openalex.org/W3058836816","https://openalex.org/W3083130172","https://openalex.org/W3088579397","https://openalex.org/W3093470641","https://openalex.org/W3103456202","https://openalex.org/W3104701888","https://openalex.org/W3173635501","https://openalex.org/W4205191326","https://openalex.org/W4205503054","https://openalex.org/W4231394154","https://openalex.org/W4253519912","https://openalex.org/W4293003482","https://openalex.org/W6907489935"],"related_works":["https://openalex.org/W3139950680","https://openalex.org/W2980864800","https://openalex.org/W2366107444","https://openalex.org/W1577772939","https://openalex.org/W2747716046","https://openalex.org/W2085182832","https://openalex.org/W2488244771","https://openalex.org/W2019354284","https://openalex.org/W857662152","https://openalex.org/W266333045"],"abstract_inverted_index":{"We":[0,174],"present":[1,199],"a":[2,24,40,70,170,182],"new":[3,46,206],"technique":[4,48],"for":[5],"the":[6,30,35,77,86,90,94,98,102,109,112,117,123,133,138,141,176,186,190,214,217],"rapid":[7,59],"modeling":[8,55,187],"and":[9,29,53,65,93,150,153],"construction":[10,110],"of":[11,42,80,97,111,140,178,185,189,216],"scientifically":[12],"accurate":[13],"mesoscale":[14],"biological":[15,36,142,203],"models.":[16],"The":[17],"resulting":[18],"3D":[19,113,166],"models":[20],"are":[21,58,161],"based":[22,50],"on":[23,51,101,181],"few":[25,71],"2D":[26,72],"microscopy":[27,73],"scans":[28],"latest":[31],"knowledge":[32],"available":[33],"about":[34],"entity,":[37,143],"represented":[38],"as":[39,85,145,169],"set":[41],"geometric":[43],"relationships.":[44],"Our":[45],"visual-programming":[47,171],"is":[49,106,120],"statistical":[52,78],"rule-based":[54],"approaches":[56],"that":[57,135],"to":[60,63,67,156,205,212],"author,":[61],"fast":[62],"construct,":[64],"easy":[66],"revise.":[68],"From":[69],"scans,":[74],"we":[75,198],"determine":[76],"properties":[79],"various":[81],"structural":[82],"aspects,":[83],"such":[84,144],"outer":[87],"membrane":[88],"shape,":[89],"spatial":[91],"properties,":[92],"distribution":[95],"characteristics":[96],"macromolecular":[99],"elements":[100],"membrane.":[103],"This":[104,194],"information":[105,126],"utilized":[107],"in":[108,209],"model.":[114],"Once":[115],"all":[116],"imaging":[118],"evidence":[119],"incorporated":[121,129],"into":[122],"model,":[124,196],"additional":[125],"can":[127,201],"be":[128],"by":[130],"interactively":[131],"defining":[132],"rules":[134,160],"spatially":[136],"characterize":[137],"rest":[139],"mutual":[146],"interactions":[147],"among":[148],"macromolecules,":[149],"their":[151],"distances":[152],"orientations":[154],"relative":[155],"other":[157],"structures.":[158],"These":[159],"defined":[162],"through":[163],"an":[164],"intuitive":[165],"interactive":[167],"visualization":[168],"feedback":[172],"loop.":[173],"demonstrate":[175],"applicability":[177],"our":[179,210],"approach":[180],"use":[183],"case":[184],"procedure":[188],"SARS-CoV-2":[191],"virion":[192],"ultrastructure.":[193],"atomistic":[195],"which":[197],"here,":[200],"steer":[202],"research":[204],"promising":[207],"directions":[208],"efforts":[211],"fight":[213],"spread":[215],"virus.":[218]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":8},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2020-05-13T00:00:00"}
