{"id":"https://openalex.org/W3092216788","doi":"https://doi.org/10.1109/tvcg.2020.3028956","title":"A Visual Analytics Approach for Ecosystem Dynamics based on Empirical Dynamic Modeling","display_name":"A Visual Analytics Approach for Ecosystem Dynamics based on Empirical Dynamic Modeling","publication_year":2020,"publication_date":"2020-10-07","ids":{"openalex":"https://openalex.org/W3092216788","doi":"https://doi.org/10.1109/tvcg.2020.3028956","mag":"3092216788","pmid":"https://pubmed.ncbi.nlm.nih.gov/33026998"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2020.3028956","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2020.3028956","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/261263/1/TVCG.2020.3028956.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090268064","display_name":"Hiroaki Natsukawa","orcid":null},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroaki Natsukawa","raw_affiliation_strings":["Kyoto University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kyoto University","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015877702","display_name":"Ethan R. Deyle","orcid":"https://orcid.org/0000-0001-8704-8434"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ethan R. Deyle","raw_affiliation_strings":["Boston University","Scripps Institution of Oceanography, University of California, San Diego","Boston University; Scripps Institution of Oceanography, University of California, San Diego"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Boston University","institution_ids":[]},{"raw_affiliation_string":"Scripps Institution of Oceanography, University of California, San Diego","institution_ids":["https://openalex.org/I150209017","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Boston University; Scripps Institution of Oceanography, University of California, San Diego","institution_ids":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071602354","display_name":"Gerald M. Pao","orcid":"https://orcid.org/0000-0001-8719-2540"},"institutions":[{"id":"https://openalex.org/I1307098950","display_name":"Salk Institute for Biological Studies","ror":"https://ror.org/03xez1567","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I1307098950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gerald M. Pao","raw_affiliation_strings":["Salk Institution for Biological Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Salk Institution for Biological Sciences","institution_ids":["https://openalex.org/I1307098950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069861564","display_name":"Koji Koyamada","orcid":"https://orcid.org/0000-0002-4283-3954"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Koji Koyamada","raw_affiliation_strings":["Kyoto University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kyoto University","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005438899","display_name":"George Sugihara","orcid":"https://orcid.org/0000-0002-2863-6946"},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George Sugihara","raw_affiliation_strings":["Scripps Institution of Oceanography, University of California, San Diego","Scripps Institution of Oceanography University of California  San Diego"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Scripps Institution of Oceanography, University of California, San Diego","institution_ids":["https://openalex.org/I150209017","https://openalex.org/I36258959"]},{"raw_affiliation_string":"Scripps Institution of Oceanography University of California  San Diego","institution_ids":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.5744,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.69070474,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":93,"max":98},"biblio":{"volume":"27","issue":"2","first_page":"506","last_page":"516"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9879000186920166,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9745000004768372,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7810623049736023},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.6138608455657959},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5908765196800232},{"id":"https://openalex.org/keywords/dynamical-systems-theory","display_name":"Dynamical systems theory","score":0.5093968510627747},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.4971354305744171},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.4761386215686798},{"id":"https://openalex.org/keywords/state-variable","display_name":"State variable","score":0.4638524055480957},{"id":"https://openalex.org/keywords/analytics","display_name":"Analytics","score":0.4520367383956909},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4345686435699463},{"id":"https://openalex.org/keywords/system-dynamics","display_name":"System dynamics","score":0.4272940456867218},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4205368459224701},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.39511731266975403},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3332986831665039},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.28541845083236694},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.18090671300888062}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7810623049736023},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.6138608455657959},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5908765196800232},{"id":"https://openalex.org/C79379906","wikidata":"https://www.wikidata.org/wiki/Q3174497","display_name":"Dynamical systems theory","level":2,"score":0.5093968510627747},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4971354305744171},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.4761386215686798},{"id":"https://openalex.org/C129537906","wikidata":"https://www.wikidata.org/wiki/Q7603913","display_name":"State variable","level":2,"score":0.4638524055480957},{"id":"https://openalex.org/C79158427","wikidata":"https://www.wikidata.org/wiki/Q485396","display_name":"Analytics","level":2,"score":0.4520367383956909},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4345686435699463},{"id":"https://openalex.org/C77405623","wikidata":"https://www.wikidata.org/wiki/Q598451","display_name":"System dynamics","level":2,"score":0.4272940456867218},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4205368459224701},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.39511731266975403},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3332986831665039},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28541845083236694},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.18090671300888062},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C97355855","wikidata":"https://www.wikidata.org/wiki/Q11473","display_name":"Thermodynamics","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tvcg.2020.3028956","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2020.3028956","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:33026998","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33026998","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:repository.kulib.kyoto-u.ac.jp:2433/261263","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/261263","pdf_url":"https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/261263/1/TVCG.2020.3028956.pdf","source":{"id":"https://openalex.org/S4306401454","display_name":"Kyoto University Research Information Repository (Kyoto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I22299242","host_organization_name":"Kyoto University","host_organization_lineage":["https://openalex.org/I22299242"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"}],"best_oa_location":{"id":"pmh:oai:repository.kulib.kyoto-u.ac.jp:2433/261263","is_oa":true,"landing_page_url":"http://hdl.handle.net/2433/261263","pdf_url":"https://repository.kulib.kyoto-u.ac.jp/dspace/bitstream/2433/261263/1/TVCG.2020.3028956.pdf","source":{"id":"https://openalex.org/S4306401454","display_name":"Kyoto University Research Information Repository (Kyoto University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I22299242","host_organization_name":"Kyoto University","host_organization_lineage":["https://openalex.org/I22299242"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal article"},"sustainable_development_goals":[{"score":0.8600000143051147,"display_name":"Life below water","id":"https://metadata.un.org/sdg/14"}],"awards":[{"id":"https://openalex.org/G1793267521","display_name":null,"funder_award_id":"NPS-P20AC00527","funder_id":"https://openalex.org/F4320306116","funder_display_name":"U.S. Department of the Interior"}],"funders":[{"id":"https://openalex.org/F4320306116","display_name":"U.S. Department of the Interior","ror":"https://ror.org/03v0pmy70"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3092216788.pdf","grobid_xml":"https://content.openalex.org/works/W3092216788.grobid-xml"},"referenced_works_count":57,"referenced_works":["https://openalex.org/W1518156650","https://openalex.org/W1588957466","https://openalex.org/W1752598806","https://openalex.org/W1939177925","https://openalex.org/W1972833765","https://openalex.org/W1981571906","https://openalex.org/W1998367480","https://openalex.org/W1998653339","https://openalex.org/W2001141328","https://openalex.org/W2005515608","https://openalex.org/W2020248080","https://openalex.org/W2022666585","https://openalex.org/W2026662997","https://openalex.org/W2028184537","https://openalex.org/W2029032412","https://openalex.org/W2038096128","https://openalex.org/W2053059880","https://openalex.org/W2053186076","https://openalex.org/W2055717422","https://openalex.org/W2071128523","https://openalex.org/W2071601050","https://openalex.org/W2083278075","https://openalex.org/W2096739311","https://openalex.org/W2099320718","https://openalex.org/W2106814120","https://openalex.org/W2108438390","https://openalex.org/W2109503531","https://openalex.org/W2109807592","https://openalex.org/W2117161218","https://openalex.org/W2118136026","https://openalex.org/W2125981337","https://openalex.org/W2137570937","https://openalex.org/W2138199375","https://openalex.org/W2151530263","https://openalex.org/W2152825437","https://openalex.org/W2155843307","https://openalex.org/W2157125360","https://openalex.org/W2161381700","https://openalex.org/W2166953159","https://openalex.org/W2167144079","https://openalex.org/W2187089797","https://openalex.org/W2255903209","https://openalex.org/W2258834670","https://openalex.org/W2294798173","https://openalex.org/W2412247133","https://openalex.org/W2593472651","https://openalex.org/W2620275924","https://openalex.org/W2753396776","https://openalex.org/W2769829698","https://openalex.org/W2787154907","https://openalex.org/W2807795618","https://openalex.org/W2922024535","https://openalex.org/W2943864384","https://openalex.org/W2960741261","https://openalex.org/W2982800447","https://openalex.org/W3016222273","https://openalex.org/W6691804791"],"related_works":["https://openalex.org/W3149127250","https://openalex.org/W2158984754","https://openalex.org/W2080934634","https://openalex.org/W4246764483","https://openalex.org/W2126824079","https://openalex.org/W2143428259","https://openalex.org/W2112083262","https://openalex.org/W4378086562","https://openalex.org/W2013467770","https://openalex.org/W4389880955"],"abstract_inverted_index":{"An":[0],"important":[1],"approach":[2,143],"for":[3],"scientific":[4],"inquiry":[5],"across":[6],"many":[7],"disciplines":[8],"involves":[9],"using":[10,133,168],"observational":[11],"time":[12,47,128],"series":[13,48,129],"data":[14,217,220],"to":[15,22,158,202,214,255],"understand":[16,69],"the":[17,27,32,44,100,103,160,241,246,250,280],"relationships":[18,45,56,126],"between":[19,46,127],"key":[20,228],"variables":[21,49,121],"gain":[23],"mechanistic":[24,163],"insights":[25],"into":[26],"underlying":[28],"rules":[29],"that":[30,76,83,96,117,144,235,268],"govern":[31],"given":[33],"system.":[34,104],"In":[35],"real":[36,219],"systems,":[37,71],"such":[38,70,195],"as":[39,86,113,175,196,226],"those":[40],"found":[41],"in":[42,61,177,262],"ecology,":[43],"are":[50,57],"generally":[51],"not":[52],"static;":[53],"instead,":[54],"these":[55,79],"dynamical":[58],"and":[59,122,162,181,192,199,218,243,252,259],"change":[60,88],"a":[62,114,154,184,187,222],"nonlinear":[63],"or":[64],"state-dependent":[65,125],"manner.":[66],"To":[67],"further":[68],"we":[72,106,266],"investigate":[73],"integrating":[74],"methods":[75,82],"appropriately":[77],"characterize":[78],"dynamics":[80],"(i.e.,":[81],"measure":[84],"interactions":[85],"they":[87],"with":[89,93,183],"time-varying":[90],"system":[91,157,166,213,247,270],"states)":[92],"visualization":[94,193,198],"techniques":[95,194],"can":[97,271],"help":[98],"analyze":[99],"behavior":[101],"of":[102,132,165,190,245,275,283],"Here,":[105],"focus":[107],"on":[108,136,148,287],"empirical":[109],"dynamic":[110,150,171,204],"modeling":[111],"(EDM)":[112],"state-of-the-art":[115],"method":[116],"specifically":[118],"identifies":[119],"causal":[120],"measures":[123],"changing":[124],"variables.":[130],"Instead":[131],"approaches":[134],"centered":[135],"parametric":[137],"equations,":[138],"EDM":[139,191],"is":[140],"an":[141,169,273],"equation-free":[142],"studies":[145,233],"systems":[146,277],"based":[147,286],"their":[149],"attractors.":[151],"We":[152,209],"propose":[153],"visual":[155,200,237],"analytics":[156,238],"support":[159,240],"identification":[161,242],"interpretation":[164,244],"states":[167],"EDM-constructed":[170],"graph.":[172],"This":[173],"work,":[174],"detailed":[176],"four":[178],"analysis":[179,282],"tasks":[180],"demonstrated":[182,267],"GUI,":[185],"provides":[186],"novel":[188],"synthesis":[189],"brush-link":[197],"summarization":[201],"interpret":[203],"graphs":[205],"representing":[206],"ecosystem":[207,263],"dynamics.":[208,264],"applied":[210],"our":[211,236,269],"proposed":[212],"ecological":[215],"simulation":[216],"from":[221],"marine":[223],"mesocosm":[224],"study":[225],"two":[227],"use":[229],"cases.":[230],"Our":[231],"case":[232],"show":[234],"tools":[239],"state":[248],"by":[249],"user,":[251],"enable":[253],"us":[254],"discover":[256],"both":[257],"confirmatory":[258],"new":[260],"findings":[261],"Overall,":[265],"facilitate":[272],"understanding":[274],"how":[276],"function":[278],"beyond":[279],"intuitive":[281],"high-dimensional":[284],"information":[285],"specific":[288],"domain":[289],"knowledge.":[290]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
