{"id":"https://openalex.org/W3015593438","doi":"https://doi.org/10.1109/tvcg.2020.2985689","title":"DPVis: Visual Analytics With Hidden Markov Models for Disease Progression Pathways","display_name":"DPVis: Visual Analytics With Hidden Markov Models for Disease Progression Pathways","publication_year":2020,"publication_date":"2020-04-07","ids":{"openalex":"https://openalex.org/W3015593438","doi":"https://doi.org/10.1109/tvcg.2020.2985689","mag":"3015593438","pmid":"https://pubmed.ncbi.nlm.nih.gov/32275600"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2020.2985689","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2020.2985689","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1904.11652","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064480048","display_name":"Bum Chul Kwon","orcid":"https://orcid.org/0000-0002-9391-6274"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Bum Chul Kwon","raw_affiliation_strings":["IBM Research, Cambridge, NY, USA","T1DI Study Group, USA"],"raw_orcid":"https://orcid.org/0000-0002-9391-6274","affiliations":[{"raw_affiliation_string":"IBM Research, Cambridge, NY, USA","institution_ids":[]},{"raw_affiliation_string":"T1DI Study Group, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007828642","display_name":"Vibha Anand","orcid":"https://orcid.org/0000-0001-8605-5712"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vibha Anand","raw_affiliation_strings":["IBM Research, Cambridge, NY, USA","T1DI Study Group, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Cambridge, NY, USA","institution_ids":[]},{"raw_affiliation_string":"T1DI Study Group, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087785636","display_name":"Kristen Severson","orcid":"https://orcid.org/0000-0002-0412-4217"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kristen A. Severson","raw_affiliation_strings":["IBM Research, Cambridge, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Cambridge, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077112143","display_name":"Soumya Ghosh","orcid":"https://orcid.org/0000-0001-8508-0641"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Soumya Ghosh","raw_affiliation_strings":["IBM Research, Cambridge, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Cambridge, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000182790","display_name":"Zhaonan Sun","orcid":"https://orcid.org/0000-0003-4471-3478"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Zhaonan Sun","raw_affiliation_strings":["IBM Research, Cambridge, NY, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM Research, Cambridge, NY, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042337966","display_name":"Brigitte I. Frohnert","orcid":"https://orcid.org/0000-0002-6636-4048"},"institutions":[{"id":"https://openalex.org/I921990950","display_name":"University of Colorado Denver","ror":"https://ror.org/02hh7en24","country_code":"US","type":"education","lineage":["https://openalex.org/I921990950"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Brigitte I. Frohnert","raw_affiliation_strings":["T1DI Study Group, USA","University of Colorado Denver, Denver, CO, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"T1DI Study Group, USA","institution_ids":[]},{"raw_affiliation_string":"University of Colorado Denver, Denver, CO, USA","institution_ids":["https://openalex.org/I921990950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076896987","display_name":"Markus Lundgren","orcid":"https://orcid.org/0000-0001-6394-7689"},"institutions":[{"id":"https://openalex.org/I187531555","display_name":"Lund University","ror":"https://ror.org/012a77v79","country_code":"SE","type":"education","lineage":["https://openalex.org/I187531555"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Markus Lundgren","raw_affiliation_strings":["Department of Clinical Sciences Malm\u00f6, Lund University, Lund, Sweden","T1DI Study Group, USA"],"raw_orcid":"https://orcid.org/0000-0001-6394-7689","affiliations":[{"raw_affiliation_string":"Department of Clinical Sciences Malm\u00f6, Lund University, Lund, Sweden","institution_ids":["https://openalex.org/I187531555"]},{"raw_affiliation_string":"T1DI Study Group, USA","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070430680","display_name":"Kenney Ng","orcid":"https://orcid.org/0000-0003-0792-070X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kenney Ng","raw_affiliation_strings":["IBM Research, Cambridge, NY, USA","T1DI Study Group, USA"],"raw_orcid":"https://orcid.org/0000-0003-0792-070X","affiliations":[{"raw_affiliation_string":"IBM Research, Cambridge, NY, USA","institution_ids":[]},{"raw_affiliation_string":"T1DI Study Group, USA","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5064480048"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.8079,"has_fulltext":false,"cited_by_count":66,"citation_normalized_percentile":{"value":0.96100537,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"27","issue":"9","first_page":"3685","last_page":"3700"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9926999807357788,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12205","display_name":"Time Series Analysis and Forecasting","score":0.9815000295639038,"subfield":{"id":"https://openalex.org/subfields/1711","display_name":"Signal Processing"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9474999904632568,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7077152729034424},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6398283839225769},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.6064037680625916},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.6029431819915771},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.526221752166748},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5080890655517578},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.48814019560813904},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.47511062026023865},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44512128829956055},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.43961459398269653},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.27714312076568604},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.12106931209564209}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7077152729034424},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6398283839225769},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.6064037680625916},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.6029431819915771},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.526221752166748},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5080890655517578},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.48814019560813904},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.47511062026023865},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44512128829956055},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.43961459398269653},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.27714312076568604},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.12106931209564209},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/tvcg.2020.2985689","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2020.2985689","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:32275600","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32275600","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:arXiv.org:1904.11652","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1904.11652","pdf_url":"https://arxiv.org/pdf/1904.11652","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:lup.lub.lu.se:b4778f5a-00e3-49b5-aa81-f54f9e89806c","is_oa":false,"landing_page_url":"https://lup.lub.lu.se/record/b4778f5a-00e3-49b5-aa81-f54f9e89806c","pdf_url":null,"source":{"id":"https://openalex.org/S4306400536","display_name":"Lund University Publications (Lund University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I187531555","host_organization_name":"Lund University","host_organization_lineage":["https://openalex.org/I187531555"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISSN: 1077-2626","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1904.11652","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1904.11652","pdf_url":"https://arxiv.org/pdf/1904.11652","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"score":0.6200000047683716,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":90,"referenced_works":["https://openalex.org/W604382572","https://openalex.org/W1006997171","https://openalex.org/W1663973292","https://openalex.org/W1799934227","https://openalex.org/W1894548183","https://openalex.org/W1901890693","https://openalex.org/W1914475855","https://openalex.org/W1931908328","https://openalex.org/W1942296996","https://openalex.org/W1953652583","https://openalex.org/W1971318070","https://openalex.org/W1980602368","https://openalex.org/W1988494453","https://openalex.org/W1988711344","https://openalex.org/W1989505216","https://openalex.org/W1999802986","https://openalex.org/W2001253920","https://openalex.org/W2014577670","https://openalex.org/W2031935267","https://openalex.org/W2042536531","https://openalex.org/W2044222306","https://openalex.org/W2045409569","https://openalex.org/W2053530354","https://openalex.org/W2060361010","https://openalex.org/W2068383400","https://openalex.org/W2071666782","https://openalex.org/W2084732601","https://openalex.org/W2091723114","https://openalex.org/W2102063906","https://openalex.org/W2102826428","https://openalex.org/W2107869122","https://openalex.org/W2110713453","https://openalex.org/W2113081107","https://openalex.org/W2117088188","https://openalex.org/W2119485335","https://openalex.org/W2122060742","https://openalex.org/W2122182354","https://openalex.org/W2141569821","https://openalex.org/W2141920797","https://openalex.org/W2142349824","https://openalex.org/W2147694185","https://openalex.org/W2157840043","https://openalex.org/W2157887077","https://openalex.org/W2171826173","https://openalex.org/W2183845744","https://openalex.org/W2186184898","https://openalex.org/W2187187251","https://openalex.org/W2334499091","https://openalex.org/W2418789291","https://openalex.org/W2500109981","https://openalex.org/W2503325364","https://openalex.org/W2507763988","https://openalex.org/W2510476599","https://openalex.org/W2527561266","https://openalex.org/W2577478840","https://openalex.org/W2610167300","https://openalex.org/W2626561790","https://openalex.org/W2740513845","https://openalex.org/W2750661846","https://openalex.org/W2751642492","https://openalex.org/W2752202880","https://openalex.org/W2752320387","https://openalex.org/W2752648449","https://openalex.org/W2790037687","https://openalex.org/W2793249730","https://openalex.org/W2804604520","https://openalex.org/W2888355804","https://openalex.org/W2889730816","https://openalex.org/W2900172775","https://openalex.org/W2903424128","https://openalex.org/W2903837810","https://openalex.org/W2910129831","https://openalex.org/W2912259983","https://openalex.org/W2922075972","https://openalex.org/W2941320055","https://openalex.org/W2963322140","https://openalex.org/W2968697710","https://openalex.org/W2970313859","https://openalex.org/W3147420708","https://openalex.org/W4250607653","https://openalex.org/W4255889613","https://openalex.org/W4285719527","https://openalex.org/W4289373362","https://openalex.org/W4293492985","https://openalex.org/W6618456822","https://openalex.org/W6682094280","https://openalex.org/W6685210674","https://openalex.org/W6686450415","https://openalex.org/W6686512395","https://openalex.org/W6756439890"],"related_works":["https://openalex.org/W2362367986","https://openalex.org/W348707231","https://openalex.org/W2064719069","https://openalex.org/W3041760129","https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W1574055964"],"abstract_inverted_index":{"Clinical":[0],"researchers":[1],"use":[2],"disease":[3,21,124,143,176,181,185],"progression":[4,12,22,125,177,186],"models":[5,47,56],"to":[6,25,88,122],"understand":[7,92],"patient":[8,27,195],"status":[9,28],"and":[10,49,62,96,116,139,156,162,188,191],"characterize":[11],"patterns":[13],"from":[14],"longitudinal":[15],"health":[16,66],"records.":[17],"One":[18],"approach":[19],"for":[20,68,77,85],"modeling":[23,94],"is":[24,172],"describe":[26],"using":[29,74],"a":[30,40,53,109,146],"small":[31],"number":[32],"of":[33,42,55,65,73,100,127,158],"states":[34,61,67],"that":[35,57,170],"represent":[36],"distinctive":[37],"distributions":[38],"over":[39],"set":[41],"observed":[43],"measures.":[44],"Hidden":[45],"Markov":[46],"(HMMs)":[48],"its":[50],"variants":[51],"are":[52],"class":[54],"both":[58],"discover":[59],"these":[60,105],"make":[63,98],"inferences":[64],"patients.":[69],"Despite":[70],"the":[71,75,101,120],"advantages":[72],"algorithms":[76],"discovering":[78],"interesting":[79],"patterns,":[80,187],"it":[81],"still":[82],"remains":[83],"challenging":[84],"medical":[86],"experts":[87],"interpret":[89],"model":[90,154],"outputs,":[91],"complex":[93],"parameters,":[95],"clinically":[97,193],"sense":[99],"patterns.":[102],"To":[103],"tackle":[104],"problems,":[106],"we":[107,148,168],"conducted":[108],"design":[110],"study":[111],"with":[112,119],"clinical":[113],"scientists,":[114],"statisticians,":[115],"visualization":[117],"experts,":[118],"goal":[121],"investigate":[123],"pathways":[126],"chronic":[128,140],"diseases,":[129],"namely":[130],"type":[131],"1":[132],"diabetes":[133],"(T1D),":[134],"Huntington's":[135],"disease,":[136,138],"Parkinson's":[137],"obstructive":[141],"pulmonary":[142],"(COPD).":[144],"As":[145],"result,":[147],"introduce":[149],"DPVis":[150,171],"which":[151],"seamlessly":[152],"integrates":[153],"parameters":[155],"outcomes":[157],"HMMs":[159],"into":[160],"interpretable":[161],"interactive":[163],"visualizations.":[164],"In":[165],"this":[166],"article,":[167],"demonstrate":[169],"successful":[173],"in":[174],"evaluating":[175],"models,":[178],"visually":[179],"summarizing":[180],"states,":[182],"interactively":[183],"exploring":[184],"building,":[189],"analyzing,":[190],"comparing":[192],"relevant":[194],"subgroups.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":7},{"year":2023,"cited_by_count":15},{"year":2022,"cited_by_count":12},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":8}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
