{"id":"https://openalex.org/W2969302812","doi":"https://doi.org/10.1109/tvcg.2019.2934802","title":"Persistent Homology Guided Force-Directed Graph Layouts","display_name":"Persistent Homology Guided Force-Directed Graph Layouts","publication_year":2019,"publication_date":"2019-01-01","ids":{"openalex":"https://openalex.org/W2969302812","doi":"https://doi.org/10.1109/tvcg.2019.2934802","mag":"2969302812","pmid":"https://pubmed.ncbi.nlm.nih.gov/31443023"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2019.2934802","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2019.2934802","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1712.05548","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084507075","display_name":"Ashley Suh","orcid":"https://orcid.org/0000-0001-6513-8447"},"institutions":[{"id":"https://openalex.org/I121934306","display_name":"Tufts University","ror":"https://ror.org/05wvpxv85","country_code":"US","type":"education","lineage":["https://openalex.org/I121934306"]},{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ashley Suh","raw_affiliation_strings":["University of South Florida, Tufts University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of South Florida, Tufts University","institution_ids":["https://openalex.org/I2613432","https://openalex.org/I121934306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001225767","display_name":"Mustafa Hajij","orcid":"https://orcid.org/0000-0002-2625-9286"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mustafa Hajij","raw_affiliation_strings":["Ohio State University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ohio State University","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100349956","display_name":"Bei Wang","orcid":"https://orcid.org/0000-0002-9240-0700"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bei Wang","raw_affiliation_strings":["University of Utah"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Utah","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035997603","display_name":"Carlos Scheidegger","orcid":"https://orcid.org/0009-0006-9163-6136"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carlos Scheidegger","raw_affiliation_strings":["University of Arizona"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Arizona","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036159118","display_name":"Paul Rosen","orcid":"https://orcid.org/0000-0002-0873-9518"},"institutions":[{"id":"https://openalex.org/I2613432","display_name":"University of South Florida","ror":"https://ror.org/032db5x82","country_code":"US","type":"education","lineage":["https://openalex.org/I2613432"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul Rosen","raw_affiliation_strings":["University of South Florida"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of South Florida","institution_ids":["https://openalex.org/I2613432"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.085,"has_fulltext":false,"cited_by_count":38,"citation_normalized_percentile":{"value":0.92425202,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"26","issue":"1","first_page":"1","last_page":"1"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12536","display_name":"Topological and Geometric Data Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10064","display_name":"Complex Network Analysis Techniques","score":0.9449999928474426,"subfield":{"id":"https://openalex.org/subfields/3109","display_name":"Statistical and Nonlinear Physics"},"field":{"id":"https://openalex.org/fields/31","display_name":"Physics and Astronomy"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7324802875518799},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.6070215702056885},{"id":"https://openalex.org/keywords/encode","display_name":"ENCODE","score":0.5515180826187134},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.5261411666870117},{"id":"https://openalex.org/keywords/directed-graph","display_name":"Directed graph","score":0.48849785327911377},{"id":"https://openalex.org/keywords/persistent-homology","display_name":"Persistent homology","score":0.47611507773399353},{"id":"https://openalex.org/keywords/graph-layout","display_name":"Graph Layout","score":0.46505412459373474},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.43888384103775024},{"id":"https://openalex.org/keywords/homology","display_name":"Homology (biology)","score":0.41542771458625793},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2060217559337616}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7324802875518799},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.6070215702056885},{"id":"https://openalex.org/C66746571","wikidata":"https://www.wikidata.org/wiki/Q1134833","display_name":"ENCODE","level":3,"score":0.5515180826187134},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.5261411666870117},{"id":"https://openalex.org/C146380142","wikidata":"https://www.wikidata.org/wiki/Q1137726","display_name":"Directed graph","level":2,"score":0.48849785327911377},{"id":"https://openalex.org/C2874115","wikidata":"https://www.wikidata.org/wiki/Q17099562","display_name":"Persistent homology","level":2,"score":0.47611507773399353},{"id":"https://openalex.org/C2911174283","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph Layout","level":4,"score":0.46505412459373474},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.43888384103775024},{"id":"https://openalex.org/C165525559","wikidata":"https://www.wikidata.org/wiki/Q224180","display_name":"Homology (biology)","level":3,"score":0.41542771458625793},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2060217559337616},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tvcg.2019.2934802","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2019.2934802","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:31443023","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31443023","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:arXiv.org:1712.05548","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1712.05548","pdf_url":"https://arxiv.org/pdf/1712.05548","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1712.05548","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1712.05548","pdf_url":"https://arxiv.org/pdf/1712.05548","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2330167591","display_name":null,"funder_award_id":"DBI-1661375","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"},{"id":"https://openalex.org/G5851593732","display_name":null,"funder_award_id":"IIS-1513616","funder_id":"https://openalex.org/F4320335353","funder_display_name":"National Science Foundation of Sri Lanka"}],"funders":[{"id":"https://openalex.org/F4320335353","display_name":"National Science Foundation of Sri Lanka","ror":"https://ror.org/010xaa060"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":100,"referenced_works":["https://openalex.org/W38619841","https://openalex.org/W143174683","https://openalex.org/W159761463","https://openalex.org/W837061932","https://openalex.org/W1479963486","https://openalex.org/W1504716054","https://openalex.org/W1507236237","https://openalex.org/W1518071186","https://openalex.org/W1528597731","https://openalex.org/W1530948733","https://openalex.org/W1555430809","https://openalex.org/W1564330171","https://openalex.org/W1597646636","https://openalex.org/W1760379987","https://openalex.org/W1830833952","https://openalex.org/W1831254230","https://openalex.org/W1842847600","https://openalex.org/W1850979810","https://openalex.org/W1965680834","https://openalex.org/W1966218348","https://openalex.org/W1967140769","https://openalex.org/W1967760180","https://openalex.org/W1971421925","https://openalex.org/W1971458834","https://openalex.org/W1980680329","https://openalex.org/W1982799219","https://openalex.org/W1984244946","https://openalex.org/W1984811500","https://openalex.org/W1989524890","https://openalex.org/W1991600978","https://openalex.org/W2019965116","https://openalex.org/W2026729066","https://openalex.org/W2026940923","https://openalex.org/W2034612719","https://openalex.org/W2035080386","https://openalex.org/W2036137014","https://openalex.org/W2041783407","https://openalex.org/W2046665435","https://openalex.org/W2049335983","https://openalex.org/W2059018062","https://openalex.org/W2065153599","https://openalex.org/W2068306188","https://openalex.org/W2071391326","https://openalex.org/W2071584957","https://openalex.org/W2081350726","https://openalex.org/W2082388593","https://openalex.org/W2097835496","https://openalex.org/W2111781385","https://openalex.org/W2112837953","https://openalex.org/W2115482647","https://openalex.org/W2117088188","https://openalex.org/W2118580158","https://openalex.org/W2122814890","https://openalex.org/W2125910575","https://openalex.org/W2126415191","https://openalex.org/W2126424784","https://openalex.org/W2126536832","https://openalex.org/W2131387736","https://openalex.org/W2131898753","https://openalex.org/W2132022337","https://openalex.org/W2132907133","https://openalex.org/W2137556660","https://openalex.org/W2142244001","https://openalex.org/W2147468287","https://openalex.org/W2148606196","https://openalex.org/W2152621157","https://openalex.org/W2156358318","https://openalex.org/W2156473689","https://openalex.org/W2158453355","https://openalex.org/W2163217369","https://openalex.org/W2163449287","https://openalex.org/W2167252678","https://openalex.org/W2167482691","https://openalex.org/W2169528473","https://openalex.org/W2293423216","https://openalex.org/W2507878054","https://openalex.org/W2745750801","https://openalex.org/W2753142777","https://openalex.org/W2753739056","https://openalex.org/W2773695849","https://openalex.org/W2888705264","https://openalex.org/W3103772912","https://openalex.org/W3124682511","https://openalex.org/W3140579943","https://openalex.org/W3145128584","https://openalex.org/W4233690291","https://openalex.org/W4246219036","https://openalex.org/W4253665446","https://openalex.org/W4255306344","https://openalex.org/W4255383393","https://openalex.org/W4297661892","https://openalex.org/W6601609194","https://openalex.org/W6606528457","https://openalex.org/W6623336695","https://openalex.org/W6647993130","https://openalex.org/W6675006076","https://openalex.org/W6677754099","https://openalex.org/W6679070811","https://openalex.org/W6681130738","https://openalex.org/W6744546661"],"related_works":["https://openalex.org/W2031908202","https://openalex.org/W2766563406","https://openalex.org/W3160329999","https://openalex.org/W2026729066","https://openalex.org/W2895526338","https://openalex.org/W2003783600","https://openalex.org/W4297904617","https://openalex.org/W2367461170","https://openalex.org/W2119031886","https://openalex.org/W4256036414"],"abstract_inverted_index":{"Graphs":[0],"are":[1,19],"commonly":[2],"used":[3,107],"to":[4,15,41,58,86,108],"encode":[5],"relationships":[6,37],"among":[7],"entities,":[8],"yet":[9],"their":[10],"abstractness":[11],"makes":[12],"them":[13],"difficult":[14],"analyze.":[16],"Node-link":[17],"diagrams":[18],"popular":[20],"for":[21,31,76],"drawing":[22],"graphs,":[23],"and":[24,51,96,119,122,157],"force-directed":[25,80,111],"layouts":[26],"provide":[27],"a":[28,153],"flexible":[29],"method":[30],"node":[32],"arrangements":[33],"that":[34,139],"use":[35],"local":[36],"in":[38],"an":[39,70],"attempt":[40],"reveal":[42],"the":[43,47,65,103,110,116,127,133,142,147],"global":[44],"shape":[45],"of":[46,53,69,79,135,149,155],"graph.":[48],"However,":[49],"clutter":[50],"overlap":[52],"unrelated":[54],"structures":[55],"can":[56],"lead":[57],"confusing":[59],"graph":[60,72,112],"visualizations.":[61],"This":[62],"paper":[63],"leverages":[64],"persistent":[66,90,128,136],"homology":[67,91,129,137],"features":[68,92,138],"undirected":[71,98],"as":[73],"derived":[74],"information":[75],"interactive":[77,104],"manipulation":[78],"layouts.":[81],"We":[82,100],"first":[83],"discuss":[84],"how":[85],"efficiently":[87],"extract":[88],"0-dimensional":[89],"from":[93],"both":[94],"weighted":[95],"unweighted":[97],"graphs.":[99],"then":[101],"introduce":[102],"persistence":[105],"barcode":[106],"manipulate":[109],"layout.":[113,143],"In":[114],"particular,":[115],"user":[117],"adds":[118],"removes":[120],"contracting":[121],"repulsing":[123],"forces":[124],"generated":[125],"by":[126],"features,":[130],"eventually":[131],"selecting":[132],"set":[134],"most":[140],"improve":[141],"Finally,":[144],"we":[145],"demonstrate":[146],"utility":[148],"our":[150],"approach":[151],"across":[152],"variety":[154],"synthetic":[156],"real":[158],"datasets.":[159]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
