{"id":"https://openalex.org/W2890117963","doi":"https://doi.org/10.1109/tvcg.2018.2864851","title":"Visualization of Large Molecular Trajectories","display_name":"Visualization of Large Molecular Trajectories","publication_year":2018,"publication_date":"2018-09-06","ids":{"openalex":"https://openalex.org/W2890117963","doi":"https://doi.org/10.1109/tvcg.2018.2864851","mag":"2890117963","pmid":"https://pubmed.ncbi.nlm.nih.gov/30207955"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2018.2864851","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2018.2864851","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2117/123129","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091297067","display_name":"David Duran","orcid":null},"institutions":[{"id":"https://openalex.org/I4210093282","display_name":"Institut de Rob\u00f2tica i Inform\u00e0tica Industrial","ror":"https://ror.org/00mcdyn90","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210093282","https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"David Duran","raw_affiliation_strings":["Institut de Robotica i Informatica Industrial, Barcelona, Catalunya, ES"],"affiliations":[{"raw_affiliation_string":"Institut de Robotica i Informatica Industrial, Barcelona, Catalunya, ES","institution_ids":["https://openalex.org/I4210093282"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088394147","display_name":"Pedro Hermosilla","orcid":"https://orcid.org/0000-0003-3586-4741"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pedro Hermosilla","raw_affiliation_strings":["Visual Computing Group, U. Ulm"],"affiliations":[{"raw_affiliation_string":"Visual Computing Group, U. Ulm","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061059879","display_name":"Timo Ropinski","orcid":"https://orcid.org/0000-0002-7857-5512"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Timo Ropinski","raw_affiliation_strings":["Visual Computing Group, U. Ulm"],"affiliations":[{"raw_affiliation_string":"Visual Computing Group, U. Ulm","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022022242","display_name":"Barbora Kozl\u00edkov\u00e1","orcid":"https://orcid.org/0000-0003-0045-0872"},"institutions":[{"id":"https://openalex.org/I21449261","display_name":"Masaryk University","ror":"https://ror.org/02j46qs45","country_code":"CZ","type":"education","lineage":["https://openalex.org/I21449261"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"Barbora Kozlikova","raw_affiliation_strings":["Masarykova univerzita, Brno, Jihomoravsk\u00c3\u00bd, CZ","Masarykova univerzita, Brno, Jihomoravsk\u00fd, CZ"],"affiliations":[{"raw_affiliation_string":"Masarykova univerzita, Brno, Jihomoravsk\u00c3\u00bd, CZ","institution_ids":["https://openalex.org/I21449261"]},{"raw_affiliation_string":"Masarykova univerzita, Brno, Jihomoravsk\u00fd, CZ","institution_ids":["https://openalex.org/I21449261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013055435","display_name":"\u00c0lvar Vinacua","orcid":"https://orcid.org/0000-0001-8984-4311"},"institutions":[{"id":"https://openalex.org/I4210093282","display_name":"Institut de Rob\u00f2tica i Inform\u00e0tica Industrial","ror":"https://ror.org/00mcdyn90","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210093282","https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Alvar Vinacua","raw_affiliation_strings":["Institut de Robotica i Informatica Industrial, Barcelona, Catalunya, ES"],"affiliations":[{"raw_affiliation_string":"Institut de Robotica i Informatica Industrial, Barcelona, Catalunya, ES","institution_ids":["https://openalex.org/I4210093282"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002141920","display_name":"Pere\u2010Pau V\u00e1zquez","orcid":"https://orcid.org/0000-0003-4638-4065"},"institutions":[{"id":"https://openalex.org/I4210093282","display_name":"Institut de Rob\u00f2tica i Inform\u00e0tica Industrial","ror":"https://ror.org/00mcdyn90","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I4210093282","https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Pere-Pau Vazquez","raw_affiliation_strings":["Institut de Robotica i Informatica Industrial, Barcelona, Catalunya, ES"],"affiliations":[{"raw_affiliation_string":"Institut de Robotica i Informatica Industrial, Barcelona, Catalunya, ES","institution_ids":["https://openalex.org/I4210093282"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5091297067"],"corresponding_institution_ids":["https://openalex.org/I4210093282"],"apc_list":null,"apc_paid":null,"fwci":1.0623,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.82752935,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"25","issue":"1","first_page":"987","last_page":"996"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9272000193595886,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8471621870994568},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.83182692527771},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5495376586914062},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.5397205948829651},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5053556561470032},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.49580082297325134},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45061153173446655},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32926705479621887},{"id":"https://openalex.org/keywords/systems-engineering","display_name":"Systems engineering","score":0.11510708928108215},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08487877249717712}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8471621870994568},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.83182692527771},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5495376586914062},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.5397205948829651},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5053556561470032},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.49580082297325134},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45061153173446655},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32926705479621887},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.11510708928108215},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08487877249717712},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tvcg.2018.2864851","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2018.2864851","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:30207955","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30207955","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null},{"id":"pmh:oai:upcommons.upc.edu:2117/123129","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/123129","pdf_url":null,"source":{"id":"https://openalex.org/S4210207057","display_name":"QRU Quaderns de Recerca en Urbanisme","issn_l":"2014-9689","issn":["2014-9689","2385-6777"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310322448","host_organization_name":"Q71272178","host_organization_lineage":["https://openalex.org/P4310322448"],"host_organization_lineage_names":["Q71272178"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":{"id":"pmh:oai:upcommons.upc.edu:2117/123129","is_oa":true,"landing_page_url":"http://hdl.handle.net/2117/123129","pdf_url":null,"source":{"id":"https://openalex.org/S4210207057","display_name":"QRU Quaderns de Recerca en Urbanisme","issn_l":"2014-9689","issn":["2014-9689","2385-6777"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/P4310322448","host_organization_name":"Q71272178","host_organization_lineage":["https://openalex.org/P4310322448"],"host_organization_lineage_names":["Q71272178"],"type":"journal"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1037833253","display_name":null,"funder_award_id":"RO 3408/2-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G1497218953","display_name":null,"funder_award_id":"Spanish","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G3972045382","display_name":null,"funder_award_id":"GC18-186471","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"},{"id":"https://openalex.org/G5106512922","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6024419964","display_name":null,"funder_award_id":"Deutsche Forschungsgemeinschaft (DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6052429835","display_name":null,"funder_award_id":"(DFG)","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7389758510","display_name":null,"funder_award_id":"GC18-18647J","funder_id":"https://openalex.org/F4320321006","funder_display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321006","display_name":"Grantov\u00e1 Agentura \u010cesk\u00e9 Republiky","ror":"https://ror.org/01pv73b02"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1879416943","https://openalex.org/W1968334774","https://openalex.org/W1989505216","https://openalex.org/W1994982193","https://openalex.org/W2005263403","https://openalex.org/W2015554878","https://openalex.org/W2025816743","https://openalex.org/W2028263411","https://openalex.org/W2029667189","https://openalex.org/W2032779105","https://openalex.org/W2039369142","https://openalex.org/W2043359500","https://openalex.org/W2045321064","https://openalex.org/W2065281489","https://openalex.org/W2074473216","https://openalex.org/W2081498635","https://openalex.org/W2093381148","https://openalex.org/W2103734924","https://openalex.org/W2107946060","https://openalex.org/W2108690571","https://openalex.org/W2113081107","https://openalex.org/W2122060742","https://openalex.org/W2129520735","https://openalex.org/W2160310346","https://openalex.org/W2160715766","https://openalex.org/W2176149189","https://openalex.org/W2217157781","https://openalex.org/W2221354200","https://openalex.org/W2291468715","https://openalex.org/W2297119606","https://openalex.org/W2297826358","https://openalex.org/W2332712348","https://openalex.org/W2335772274","https://openalex.org/W2338188909","https://openalex.org/W2467187082","https://openalex.org/W2510476599","https://openalex.org/W2515351726","https://openalex.org/W2549327495","https://openalex.org/W2588940733","https://openalex.org/W2624762677","https://openalex.org/W2626561790","https://openalex.org/W2789701916","https://openalex.org/W6739199594"],"related_works":["https://openalex.org/W3196817267","https://openalex.org/W2013728941","https://openalex.org/W4225274103","https://openalex.org/W2579659702","https://openalex.org/W2154046714","https://openalex.org/W1965329638","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W2189613078","https://openalex.org/W2586219255"],"abstract_inverted_index":{"The":[0,159],"analysis":[1],"of":[2,16,48,67,69,92,109,156,176,182],"protein-ligand":[3,29],"interactions":[4,135],"is":[5,161],"a":[6,45,103,180],"time-intensive":[7],"task.":[8],"Researchers":[9],"have":[10,172],"to":[11,24,43,65,78,128,145,153],"analyze":[12],"multiple":[13,167],"physico-chemical":[14],"properties":[15],"the":[17,28,49,52,84,126,130,132,157,174,191],"protein":[18,137,186],"at":[19],"once":[20],"and":[21,36,58,116,138,147,151,188],"combine":[22],"them":[23],"derive":[25],"conclusions":[26],"about":[27,134],"interplay.":[30],"Typically,":[31],"several":[32],"charts":[33],"are":[34,61,75,122,169],"inspected,":[35],"3D":[37],"animations":[38],"can":[39],"be":[40],"played":[41],"side-by-side":[42],"obtain":[44],"deeper":[46],"understanding":[47],"data.":[50],"With":[51],"advances":[53],"in":[54,113],"simulation":[55],"techniques,":[56],"larger":[57,59],"datasets":[60,183],"available,":[62],"with":[63,80],"up":[64],"hundreds":[66],"thousands":[68],"steps.":[70],"Unfortunately,":[71],"such":[72],"large":[73,94,111],"trajectories":[74,95,112],"very":[76,110],"difficult":[77],"investigate":[79],"traditional":[81],"approaches.":[82],"Therefore,":[83],"need":[85],"for":[86,106,164],"special":[87],"tools":[88],"that":[89],"facilitate":[90],"inspection":[91,150],"these":[93],"becomes":[96],"substantial.":[97],"In":[98],"this":[99],"paper,":[100],"we":[101,189],"present":[102],"novel":[104],"system":[105,141,160],"visual":[107],"exploration":[108],"an":[114],"interactive":[115],"user-friendly":[117],"way.":[118],"Several":[119],"visualization":[120],"motifs":[121],"automatically":[123],"derived":[124],"from":[125,185],"data":[127,149],"give":[129],"user":[131],"information":[133],"between":[136],"ligand.":[139],"Our":[140],"offers":[142],"specialized":[143],"widgets":[144],"ease":[146],"accelerate":[148],"navigation":[152],"interesting":[154],"parts":[155],"simulation.":[158],"suitable":[162],"also":[163],"simulations":[165],"where":[166],"ligands":[168],"involved.":[170],"We":[171],"tested":[173],"usefulness":[175],"our":[177],"tool":[178],"on":[179],"set":[181],"obtained":[184],"engineers,":[187],"describe":[190],"expert":[192],"feedback.":[193]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":7}],"updated_date":"2026-03-13T16:22:10.518609","created_date":"2025-10-10T00:00:00"}
