{"id":"https://openalex.org/W2753862885","doi":"https://doi.org/10.1109/tvcg.2017.2744518","title":"Visualization Multi-Pipeline for Communicating Biology","display_name":"Visualization Multi-Pipeline for Communicating Biology","publication_year":2017,"publication_date":"2017-08-28","ids":{"openalex":"https://openalex.org/W2753862885","doi":"https://doi.org/10.1109/tvcg.2017.2744518","mag":"2753862885","pmid":"https://pubmed.ncbi.nlm.nih.gov/28866552"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2017.2744518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2017.2744518","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088614523","display_name":"Peter Mindek","orcid":"https://orcid.org/0000-0002-9434-5952"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Peter Mindek","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031138186","display_name":"David Kou\u0159il","orcid":"https://orcid.org/0000-0003-4043-3487"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"David Kouril","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087063362","display_name":"Johannes Sorger","orcid":"https://orcid.org/0000-0002-5212-8941"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Johannes Sorger","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051743997","display_name":"Daniel Toloudis","orcid":"https://orcid.org/0000-0003-2620-1233"},"institutions":[{"id":"https://openalex.org/I4210164942","display_name":"Allen Institute for Cell Science","ror":"https://ror.org/05kg6bp11","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210140341","https://openalex.org/I4210164942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Toloudis","raw_affiliation_strings":["Allen Institute for Cell Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute for Cell Science","institution_ids":["https://openalex.org/I4210164942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046803850","display_name":"Blair Lyons","orcid":"https://orcid.org/0000-0002-6038-6035"},"institutions":[{"id":"https://openalex.org/I4210164942","display_name":"Allen Institute for Cell Science","ror":"https://ror.org/05kg6bp11","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210140341","https://openalex.org/I4210164942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Blair Lyons","raw_affiliation_strings":["Allen Institute for Cell Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute for Cell Science","institution_ids":["https://openalex.org/I4210164942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102901072","display_name":"Graham T. Johnson","orcid":"https://orcid.org/0000-0002-1259-8762"},"institutions":[{"id":"https://openalex.org/I4210164942","display_name":"Allen Institute for Cell Science","ror":"https://ror.org/05kg6bp11","country_code":"US","type":"facility","lineage":["https://openalex.org/I4210140341","https://openalex.org/I4210164942"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Graham Johnson","raw_affiliation_strings":["Allen Institute for Cell Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Allen Institute for Cell Science","institution_ids":["https://openalex.org/I4210164942"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109928029","display_name":"M. Eduard Gr\u00f6ller","orcid":null},"institutions":[{"id":"https://openalex.org/I1343190059","display_name":"VRVis GmbH (Austria)","ror":"https://ror.org/02xyxvc90","country_code":"AT","type":"company","lineage":["https://openalex.org/I1343190059"]},{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"M. Eduard Groller","raw_affiliation_strings":["TU Wien","VRVis Research Center"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]},{"raw_affiliation_string":"VRVis Research Center","institution_ids":["https://openalex.org/I1343190059"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022294742","display_name":"Ivan Viola","orcid":"https://orcid.org/0000-0003-4248-6574"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Ivan Viola","raw_affiliation_strings":["TU Wien"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TU Wien","institution_ids":["https://openalex.org/I145847075"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":7.6537,"has_fulltext":false,"cited_by_count":23,"citation_normalized_percentile":{"value":0.97115557,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"24","issue":"1","first_page":"883","last_page":"892"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9860000014305115,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8595829606056213},{"id":"https://openalex.org/keywords/rendering","display_name":"Rendering (computer graphics)","score":0.7644658088684082},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7510004639625549},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6741910576820374},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.6115813255310059},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5358283519744873},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5326547026634216},{"id":"https://openalex.org/keywords/scientific-visualization","display_name":"Scientific visualization","score":0.5085629224777222},{"id":"https://openalex.org/keywords/human\u2013computer-interaction","display_name":"Human\u2013computer interaction","score":0.4076562225818634},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.32592523097991943},{"id":"https://openalex.org/keywords/multimedia","display_name":"Multimedia","score":0.3219967484474182},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.3213346004486084},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.20569899678230286},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14431172609329224},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.14164161682128906}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8595829606056213},{"id":"https://openalex.org/C205711294","wikidata":"https://www.wikidata.org/wiki/Q176953","display_name":"Rendering (computer graphics)","level":2,"score":0.7644658088684082},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7510004639625549},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6741910576820374},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.6115813255310059},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5358283519744873},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5326547026634216},{"id":"https://openalex.org/C59740354","wikidata":"https://www.wikidata.org/wiki/Q2737866","display_name":"Scientific visualization","level":3,"score":0.5085629224777222},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.4076562225818634},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32592523097991943},{"id":"https://openalex.org/C49774154","wikidata":"https://www.wikidata.org/wiki/Q131765","display_name":"Multimedia","level":1,"score":0.3219967484474182},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3213346004486084},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.20569899678230286},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14431172609329224},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.14164161682128906}],"mesh":[{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000078326","descriptor_name":"Data Visualization","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D035843","descriptor_name":"Biomedical Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D057026","descriptor_name":"Induced Pluripotent Stem Cells","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tvcg.2017.2744518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2017.2744518","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:28866552","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28866552","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7130531712","display_name":null,"funder_award_id":"P24597-N23","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"}],"funders":[{"id":"https://openalex.org/F4320321003","display_name":"Vienna Science and Technology Fund","ror":"https://ror.org/01f9mc681"},{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1486999524","https://openalex.org/W1498712972","https://openalex.org/W1524992328","https://openalex.org/W1603419702","https://openalex.org/W1974035453","https://openalex.org/W1976443465","https://openalex.org/W1993499707","https://openalex.org/W1994982193","https://openalex.org/W2000493547","https://openalex.org/W2002569088","https://openalex.org/W2042729995","https://openalex.org/W2061675310","https://openalex.org/W2065119389","https://openalex.org/W2093301923","https://openalex.org/W2095995627","https://openalex.org/W2100317923","https://openalex.org/W2120238752","https://openalex.org/W2132629607","https://openalex.org/W2139033131","https://openalex.org/W2152013121","https://openalex.org/W2161971256","https://openalex.org/W2166470747","https://openalex.org/W2167279371","https://openalex.org/W2244686166","https://openalex.org/W2266444877","https://openalex.org/W2291468715","https://openalex.org/W2293451457","https://openalex.org/W2295924703","https://openalex.org/W2399141186","https://openalex.org/W2724462909","https://openalex.org/W3140348931","https://openalex.org/W4242978891","https://openalex.org/W4244445143","https://openalex.org/W4249447532","https://openalex.org/W6629210384","https://openalex.org/W6739750428","https://openalex.org/W6824737996"],"related_works":["https://openalex.org/W2167838283","https://openalex.org/W2134678736","https://openalex.org/W2086422077","https://openalex.org/W2785421060","https://openalex.org/W2192626033","https://openalex.org/W2127983067","https://openalex.org/W2157445661","https://openalex.org/W2044105167","https://openalex.org/W1582534292","https://openalex.org/W1601538659"],"abstract_inverted_index":{"We":[0],"propose":[1],"a":[2,10,163,167],"system":[3,86,118,202],"to":[4,12,59,81,89,131,186,193],"facilitate":[5],"biology":[6,28],"communication":[7],"by":[8,126],"developing":[9],"pipeline":[11,173],"support":[13],"the":[14,37,60,83,96,102,115,117,148,172],"instructional":[15],"visualization":[16],"of":[17,41,46,98,208],"heterogeneous":[18,22,99],"biological":[19,209],"data":[20,62,109],"on":[21],"user-devices.":[23],"Discoveries":[24],"and":[25,39,72,166,182],"concepts":[26],"in":[27,111,139,153,170],"are":[29,66,69,137,143],"typically":[30,70],"summarized":[31],"with":[32,56],"illustrations":[33,48],"assembled":[34],"manually":[35],"from":[36,107],"interpretation":[38],"application":[40,165],"heterogenous":[42],"data.":[43],"The":[44,145,176],"creation":[45],"such":[47],"is":[49,76,87,105,174,184],"time":[50],"consuming,":[51],"which":[52,171],"makes":[53,200],"it":[54,78,183],"incompatible":[55],"frequent":[57],"updates":[58],"measured":[61],"as":[63,124],"new":[64],"discoveries":[65],"made.":[67],"Illustrations":[68],"non-interactive,":[71],"when":[73],"an":[74],"illustration":[75,134],"updated,":[77],"still":[79],"has":[80],"reach":[82],"user.":[84],"Our":[85],"designed":[88],"overcome":[90],"these":[91,135],"three":[92],"obstacles.":[93],"It":[94],"supports":[95,179],"integration":[97],"datasets,":[100,116],"reflecting":[101],"knowledge":[103],"that":[104],"gained":[106],"different":[108,194],"sources":[110],"biology.":[112],"After":[113],"pre-processing":[114],"transforms":[119],"them":[120],"into":[121],"visual":[122],"representations":[123,136],"inspired":[125],"scientific":[127,133],"illustrations.":[128],"As":[129],"opposed":[130],"traditional":[132],"generated":[138],"real-time":[140],"-":[141],"they":[142],"interactive.":[144],"code":[146],"generating":[147],"visualizations":[149],"can":[150],"be":[151],"embedded":[152],"various":[154],"software":[155],"environments.":[156],"To":[157],"demonstrate":[158],"this,":[159],"we":[160],"implemented":[161],"both":[162],"desktop":[164],"remote-rendering":[168,177],"server":[169,178],"embedded.":[175],"multi-threaded":[180],"rendering":[181],"able":[185],"handle":[187],"multiple":[188],"users":[189],"simultaneously.":[190],"This":[191],"scalability":[192],"hardware":[195],"environments,":[196],"including":[197],"multi-GPU":[198],"setups,":[199],"our":[201],"useful":[203],"for":[204],"efficient":[205],"public":[206],"dissemination":[207],"discoveries.":[210]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
