{"id":"https://openalex.org/W1979246995","doi":"https://doi.org/10.1109/tvcg.2014.2346753","title":"Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks","display_name":"Genotet: An Interactive Web-based Visual Exploration Framework to Support Validation of Gene Regulatory Networks","publication_year":2014,"publication_date":"2014-08-11","ids":{"openalex":"https://openalex.org/W1979246995","doi":"https://doi.org/10.1109/tvcg.2014.2346753","mag":"1979246995","pmid":"https://pubmed.ncbi.nlm.nih.gov/26356904"},"language":"en","primary_location":{"id":"doi:10.1109/tvcg.2014.2346753","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2014.2346753","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100604885","display_name":"Bowen Yu","orcid":"https://orcid.org/0000-0002-0852-6280"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Bowen Yu","raw_affiliation_strings":["NYU Polytechnic School of Engineering",", NYU Polytechnic School of Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Polytechnic School of Engineering","institution_ids":[]},{"raw_affiliation_string":", NYU Polytechnic School of Engineering","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033801646","display_name":"Harish Doraiswamy","orcid":"https://orcid.org/0000-0003-2995-250X"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Harish Doraiswamy","raw_affiliation_strings":["NYU Polytechnic School of Engineering",", NYU Polytechnic School of Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Polytechnic School of Engineering","institution_ids":[]},{"raw_affiliation_string":", NYU Polytechnic School of Engineering","institution_ids":["https://openalex.org/I57206974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100329909","display_name":"Xi Chen","orcid":"https://orcid.org/0000-0002-1342-9709"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Xi Chen","raw_affiliation_strings":["NYU Center for Genomics and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Center for Genomics and Systems Biology","institution_ids":["https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002268742","display_name":"Emily R. Miraldi","orcid":"https://orcid.org/0000-0002-0232-3116"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Emily Miraldi","raw_affiliation_strings":["NYU Center for Genomics and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Center for Genomics and Systems Biology","institution_ids":["https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072790987","display_name":"Mario L. Arrieta\u2010Ortiz","orcid":"https://orcid.org/0000-0002-7111-8087"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mario Luis Arrieta-Ortiz","raw_affiliation_strings":["NYU Center for Genomics and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Center for Genomics and Systems Biology","institution_ids":["https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072183933","display_name":"Christoph Hafemeister","orcid":"https://orcid.org/0000-0001-6365-8254"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christoph Hafemeister","raw_affiliation_strings":["NYU Center for Genomics and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Center for Genomics and Systems Biology","institution_ids":["https://openalex.org/I4210151791"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044776929","display_name":"Aviv Madar","orcid":"https://orcid.org/0000-0003-2282-8848"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aviv Madar","raw_affiliation_strings":["Cornell University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cornell University","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055203249","display_name":"Richard Bonneau","orcid":"https://orcid.org/0000-0003-4354-7906"},"institutions":[{"id":"https://openalex.org/I4210151791","display_name":"Genomics (United Kingdom)","ror":"https://ror.org/053a6xa29","country_code":"GB","type":"company","lineage":["https://openalex.org/I4210151791"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard Bonneau","raw_affiliation_strings":["NYU Center for Genomics and Systems Biology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Center for Genomics and Systems Biology","institution_ids":["https://openalex.org/I4210151791"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108718797","display_name":"Claudio T. Silva","orcid":"https://orcid.org/0000-0003-2452-2295"},"institutions":[{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Claudio T. Silva","raw_affiliation_strings":["NYU Polytechnic School of Engineering",", NYU Polytechnic School of Engineering"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NYU Polytechnic School of Engineering","institution_ids":[]},{"raw_affiliation_string":", NYU Polytechnic School of Engineering","institution_ids":["https://openalex.org/I57206974"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.17,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.76490505,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"20","issue":"12","first_page":"1903","last_page":"1912"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.996399998664856,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6512326598167419},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6439382433891296},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5473508834838867},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5408675074577332},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.5220308303833008},{"id":"https://openalex.org/keywords/interactive-visualization","display_name":"Interactive visualization","score":0.4332846701145172},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.43243131041526794},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.41098737716674805},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3593409061431885},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.33004534244537354},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3040400743484497},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2834107279777527},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.21317139267921448},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13141492009162903}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6512326598167419},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6439382433891296},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5473508834838867},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5408675074577332},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.5220308303833008},{"id":"https://openalex.org/C64073096","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Interactive visualization","level":3,"score":0.4332846701145172},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.43243131041526794},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.41098737716674805},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3593409061431885},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.33004534244537354},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3040400743484497},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2834107279777527},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.21317139267921448},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13141492009162903}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tvcg.2014.2346753","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tvcg.2014.2346753","pdf_url":null,"source":{"id":"https://openalex.org/S84775595","display_name":"IEEE Transactions on Visualization and Computer Graphics","issn_l":"1077-2626","issn":["1077-2626","1941-0506","2160-9306"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Visualization and Computer Graphics","raw_type":"journal-article"},{"id":"pmid:26356904","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26356904","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on visualization and computer graphics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.41999998688697815,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1676954270","display_name":null,"funder_award_id":"PN2 EY 016586","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"},{"id":"https://openalex.org/G2326637860","display_name":null,"funder_award_id":"IU54CA143907-01","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G5022477030","display_name":null,"funder_award_id":"EY016586-06","funder_id":"https://openalex.org/F4320337350","funder_display_name":"National Eye Institute"}],"funders":[{"id":"https://openalex.org/F4320337350","display_name":"National Eye Institute","ror":"https://ror.org/03wkg3b53"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W343233802","https://openalex.org/W1490553060","https://openalex.org/W1812401750","https://openalex.org/W1970156673","https://openalex.org/W1981509058","https://openalex.org/W2021340905","https://openalex.org/W2021341670","https://openalex.org/W2024290096","https://openalex.org/W2076382102","https://openalex.org/W2097546690","https://openalex.org/W2112118427","https://openalex.org/W2117131162","https://openalex.org/W2117757143","https://openalex.org/W2121607820","https://openalex.org/W2133405489","https://openalex.org/W2135415614","https://openalex.org/W2137531873","https://openalex.org/W2138891173","https://openalex.org/W2142322930","https://openalex.org/W2146734921","https://openalex.org/W2148803358","https://openalex.org/W2155405213","https://openalex.org/W2157348185","https://openalex.org/W2159675211","https://openalex.org/W2247766769","https://openalex.org/W2928505729","https://openalex.org/W4242246215"],"related_works":["https://openalex.org/W2158714033","https://openalex.org/W78967844","https://openalex.org/W2949927938","https://openalex.org/W3213185671","https://openalex.org/W4210989272","https://openalex.org/W4206945140","https://openalex.org/W4386628104","https://openalex.org/W2029387041","https://openalex.org/W2130939068","https://openalex.org/W3163717165"],"abstract_inverted_index":{"Elucidation":[0],"of":[1,14,19,67,97,124,136,160,179,208,216,233],"transcriptional":[2],"regulatory":[3,57,81,117,131],"networks":[4],"(TRNs)":[5],"is":[6],"a":[7,64,171,231,238],"fundamental":[8],"goal":[9],"in":[10,42,49,100,104,155],"biology,":[11],"and":[12,32,70,93,120,127,141,169,177,186,194,237],"one":[13],"the":[15,95,138,142,158,209,214,223],"most":[16],"important":[17],"components":[18],"TRNs":[20],"are":[21,73],"transcription":[22],"factors":[23],"(TFs),":[24],"proteins":[25],"that":[26],"specifically":[27],"bind":[28],"to":[29,35,54,102,204],"gene":[30,38,87,130],"promoter":[31],"enhancer":[33],"regions":[34],"alter":[36],"target":[37],"expression":[39,180],"patterns.":[40],"Advances":[41],"genomic":[43],"technologies":[44],"as":[45,47],"well":[46],"advances":[48],"computational":[50],"biology":[51],"have":[52],"led":[53],"multiple":[55,74,195],"large":[56,65,80,134],"network":[58,82,118,139,184],"models":[59,140,185],"(directed":[60],"networks)":[61],"each":[62],"with":[63,151,244],"corpus":[66],"supporting":[68],"data":[69,126,144,181,188,192],"gene-annotation.":[71],"There":[72],"possible":[75],"biological":[76],"motivations":[77],"for":[78,174,222],"exploring":[79,94],"models,":[83,119],"including:":[84],"validating":[85,116],"TF-target":[86],"relationships,":[88],"figuring":[89],"out":[90],"co-regulation":[91],"patterns,":[92],"coordination":[96],"cell":[98,105],"processes":[99],"response":[101],"changes":[103],"state":[106],"or":[107],"environment.":[108],"Here":[109],"we":[110,167,198,212],"focus":[111],"on":[112,121,230],"queries":[113,149],"aimed":[114],"at":[115],"coordinating":[122,175],"visualization":[123,176],"primary":[125,143],"directed":[128],"weighted":[129],"networks.":[132],"The":[133],"size":[135],"both":[137],"can":[145],"make":[146],"such":[147],"coordinated":[148,196],"cumbersome":[150],"existing":[152],"tools":[153],"and,":[154],"particular,":[156],"inhibits":[157],"sharing":[159],"results":[161],"between":[162],"collaborators.":[163],"In":[164],"this":[165],"work,":[166],"develop":[168],"demonstrate":[170],"web-based":[172],"framework":[173,218],"exploration":[178],"(RNA-seq,":[182],"microarray),":[183],"gene-binding":[187],"(ChIP-seq).":[189],"Using":[190],"specialized":[191],"structures":[193],"views,":[197],"design":[199],"an":[200],"efficient":[201],"querying":[202],"model":[203,239],"support":[205],"interactive":[206],"analysis":[207],"data.":[210],"Finally,":[211],"show":[213],"effectiveness":[215],"our":[217],"through":[219],"case":[220],"studies":[221],"mouse":[224],"immune":[225],"system":[226],"(a":[227,241],"dataset":[228],"focused":[229],"subset":[232],"key":[234],"cellular":[235],"functions)":[236],"bacteria":[240],"small":[242],"genome":[243],"high":[245],"data-completeness).":[246]},"counts_by_year":[{"year":2022,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":5},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
