{"id":"https://openalex.org/W2158083345","doi":"https://doi.org/10.1109/tsp.2011.2157915","title":"Waveform Mapping and Time-Frequency Processing of DNA and Protein Sequences","display_name":"Waveform Mapping and Time-Frequency Processing of DNA and Protein Sequences","publication_year":2011,"publication_date":"2011-05-27","ids":{"openalex":"https://openalex.org/W2158083345","doi":"https://doi.org/10.1109/tsp.2011.2157915","mag":"2158083345"},"language":"en","primary_location":{"id":"doi:10.1109/tsp.2011.2157915","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tsp.2011.2157915","pdf_url":null,"source":{"id":"https://openalex.org/S168680287","display_name":"IEEE Transactions on Signal Processing","issn_l":"1053-587X","issn":["1053-587X","1941-0476"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Signal Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069716320","display_name":"Lakshminarayan Ravichandran","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Lakshminarayan Ravichandran","raw_affiliation_strings":["Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069246416","display_name":"Antonia Papandreou\u2010Suppappola","orcid":"https://orcid.org/0000-0002-5223-6256"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Antonia Papandreou-Suppappola","raw_affiliation_strings":["Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074371899","display_name":"Andreas Spanias","orcid":"https://orcid.org/0000-0003-0306-9348"},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andreas Spanias","raw_affiliation_strings":["Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038915978","display_name":"Zo\u00e9 Lacroix","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zo\u00e9 Lacroix","raw_affiliation_strings":["Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Sensor Signal and Information Processing Center, School of Electrical, Computer and Energy Engineering, Arizona State University, Tempe, AZ, USA","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110218857","display_name":"Christophe Legendre","orcid":null},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christophe Legendre","raw_affiliation_strings":["Pharmaceutical Genomics Division, Translational Genomics Research Institute Phoenix, Phoenix, AZ, USA"],"affiliations":[{"raw_affiliation_string":"Pharmaceutical Genomics Division, Translational Genomics Research Institute Phoenix, Phoenix, AZ, USA","institution_ids":["https://openalex.org/I1284308235"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5069716320"],"corresponding_institution_ids":["https://openalex.org/I55732556"],"apc_list":null,"apc_paid":null,"fwci":0.7817,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.7151472,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"59","issue":"9","first_page":"4210","last_page":"4224"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12946","display_name":"Fractal and DNA sequence analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.96670001745224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9542999863624573,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/waveform","display_name":"Waveform","score":0.6108781099319458},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5635372400283813},{"id":"https://openalex.org/keywords/time\u2013frequency-analysis","display_name":"Time\u2013frequency analysis","score":0.5429520010948181},{"id":"https://openalex.org/keywords/signal-processing","display_name":"Signal processing","score":0.5424453020095825},{"id":"https://openalex.org/keywords/speech-recognition","display_name":"Speech recognition","score":0.42444926500320435},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.32978135347366333},{"id":"https://openalex.org/keywords/telecommunications","display_name":"Telecommunications","score":0.26471924781799316},{"id":"https://openalex.org/keywords/radar","display_name":"Radar","score":0.171808660030365}],"concepts":[{"id":"https://openalex.org/C197424946","wikidata":"https://www.wikidata.org/wiki/Q1165717","display_name":"Waveform","level":3,"score":0.6108781099319458},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5635372400283813},{"id":"https://openalex.org/C142433447","wikidata":"https://www.wikidata.org/wiki/Q7806653","display_name":"Time\u2013frequency analysis","level":3,"score":0.5429520010948181},{"id":"https://openalex.org/C104267543","wikidata":"https://www.wikidata.org/wiki/Q208163","display_name":"Signal processing","level":3,"score":0.5424453020095825},{"id":"https://openalex.org/C28490314","wikidata":"https://www.wikidata.org/wiki/Q189436","display_name":"Speech recognition","level":1,"score":0.42444926500320435},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.32978135347366333},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.26471924781799316},{"id":"https://openalex.org/C554190296","wikidata":"https://www.wikidata.org/wiki/Q47528","display_name":"Radar","level":2,"score":0.171808660030365}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tsp.2011.2157915","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tsp.2011.2157915","pdf_url":null,"source":{"id":"https://openalex.org/S168680287","display_name":"IEEE Transactions on Signal Processing","issn_l":"1053-587X","issn":["1053-587X","1941-0476"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Signal Processing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W113857832","https://openalex.org/W297918892","https://openalex.org/W641284212","https://openalex.org/W1489692150","https://openalex.org/W1557390898","https://openalex.org/W1590304139","https://openalex.org/W1768071746","https://openalex.org/W1771595819","https://openalex.org/W1851721354","https://openalex.org/W1997730991","https://openalex.org/W1998845048","https://openalex.org/W2002995246","https://openalex.org/W2011259212","https://openalex.org/W2018862527","https://openalex.org/W2024213282","https://openalex.org/W2028445324","https://openalex.org/W2037848640","https://openalex.org/W2049349724","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2079571677","https://openalex.org/W2084175832","https://openalex.org/W2087064593","https://openalex.org/W2108235229","https://openalex.org/W2109090520","https://openalex.org/W2119057313","https://openalex.org/W2120195427","https://openalex.org/W2123497271","https://openalex.org/W2124934062","https://openalex.org/W2127774996","https://openalex.org/W2129713651","https://openalex.org/W2130289275","https://openalex.org/W2136145671","https://openalex.org/W2137255850","https://openalex.org/W2139824921","https://openalex.org/W2143210482","https://openalex.org/W2151693816","https://openalex.org/W2158714788","https://openalex.org/W2170170066","https://openalex.org/W2188563164","https://openalex.org/W3151807103","https://openalex.org/W4236236547","https://openalex.org/W4248512698","https://openalex.org/W6629401753","https://openalex.org/W6633180349","https://openalex.org/W6677631532","https://openalex.org/W6678416256"],"related_works":["https://openalex.org/W1974895211","https://openalex.org/W2176409448","https://openalex.org/W2129841057","https://openalex.org/W3040712279","https://openalex.org/W2364769705","https://openalex.org/W2056136368","https://openalex.org/W2374664672","https://openalex.org/W4367555392","https://openalex.org/W2883092465","https://openalex.org/W2367940508"],"abstract_inverted_index":{"Current":[0],"state-of-the-art":[1],"approaches":[2,22],"for":[3,28,37,48,62,118,170,175,192],"biological":[4,49,165],"sequence":[5,78,166,194],"querying":[6,30,91],"and":[7,11,123,148],"alignment":[8,46,63,86,140,167],"require":[9],"preprocessing":[10],"lack":[12],"robustness":[13],"to":[14,55,104],"repetitions":[15],"in":[16,64,80,108,153],"the":[17,60,65,81,105,109,127,132,139,164,182,186],"sequence.":[18],"In":[19],"addition,":[20],"these":[21],"do":[23],"not":[24],"provide":[25],"much":[26],"support":[27],"efficiently":[29],"subsequences,":[31],"a":[32,44,89,95],"process":[33],"that":[34,51,93,160],"is":[35,102,189],"essential":[36],"tracking":[38],"localized":[39],"database":[40,146],"matches.":[41],"We":[42,136,157],"propose":[43],"query-based":[45],"method":[47,87,168],"sequences":[50,54,125],"first":[52],"maps":[53],"time-domain":[56],"waveforms":[57,61],"before":[58],"processing":[59],"time-frequency":[66,82,96],"plane.":[67,83],"The":[68,84,112],"mapping":[69],"uses":[70],"waveforms,":[71],"such":[72],"as":[73,131],"Gaussian":[74],"functions,":[75],"with":[76,172,185],"unique":[77],"representations":[79],"proposed":[85],"employs":[88],"robust":[90],"algorithm":[92],"utilizes":[94],"signal":[97,133],"expansion":[98],"whose":[99],"basis":[100,134],"function":[101],"matched":[103],"basic":[106],"waveform":[107],"mapped":[110],"sequences.":[111,177],"resulting":[113],"WAVEQuery":[114,143,161,183],"approach":[115,184],"was":[116],"demonstrated":[117,150,159],"both":[119],"deoxyribonucleic":[120],"acid":[121],"(DNA)":[122],"protein":[124,193],"using":[126],"matching":[128],"pursuit":[129],"decomposition":[130],"expansion.":[135],"specifically":[137],"evaluated":[138],"localization":[141],"of":[142,181],"over":[144],"repetitive":[145,173],"segments,":[147],"we":[149],"its":[151],"operation":[152],"real-time":[154],"without":[155],"preprocessing.":[156],"also":[158,190],"significantly":[162],"outperformed":[163],"BLAST":[169],"queries":[171],"segments":[174],"DNA":[176],"A":[178],"generalized":[179],"version":[180],"metaplectic":[187],"transform":[188],"described":[191],"structure":[195],"prediction.":[196]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
