{"id":"https://openalex.org/W2474201146","doi":"https://doi.org/10.1109/tpds.2015.2460247","title":"Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures","display_name":"Parallel Pairwise Epistasis Detection on Heterogeneous Computing Architectures","publication_year":2015,"publication_date":"2015-07-23","ids":{"openalex":"https://openalex.org/W2474201146","doi":"https://doi.org/10.1109/tpds.2015.2460247","mag":"2474201146"},"language":"en","primary_location":{"id":"doi:10.1109/tpds.2015.2460247","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tpds.2015.2460247","pdf_url":null,"source":{"id":"https://openalex.org/S97130795","display_name":"IEEE Transactions on Parallel and Distributed Systems","issn_l":"1045-9219","issn":["1045-9219","1558-2183","2161-9883"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Parallel and Distributed Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2183/21755","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008112601","display_name":"Jorge Gonz\u00e1lez\u2010Dom\u00ednguez","orcid":"https://orcid.org/0000-0002-2602-4874"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jorge Gonzalez-Dominguez","raw_affiliation_strings":["Parallel and Distributed Architectures Group, Institute of Computer Science, Johannes Gutenberg University Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parallel and Distributed Architectures Group, Institute of Computer Science, Johannes Gutenberg University Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035211063","display_name":"Sabela Ramos","orcid":"https://orcid.org/0000-0001-6656-9732"},"institutions":[{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Sabela Ramos","raw_affiliation_strings":["Computer Architecture Group, Department of Electronics and Systems, University of A Coru\u00f1a, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Group, Department of Electronics and Systems, University of A Coru\u00f1a, Spain","institution_ids":["https://openalex.org/I11019714"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061208587","display_name":"Juan Touri\u00f1o","orcid":"https://orcid.org/0000-0001-9670-1933"},"institutions":[{"id":"https://openalex.org/I11019714","display_name":"Universidade da Coru\u00f1a","ror":"https://ror.org/01qckj285","country_code":"ES","type":"education","lineage":["https://openalex.org/I11019714"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Juan Tourino","raw_affiliation_strings":["Computer Architecture Group, Department of Electronics and Systems, University of A Coru\u00f1a, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Architecture Group, Department of Electronics and Systems, University of A Coru\u00f1a, Spain","institution_ids":["https://openalex.org/I11019714"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5020388832","display_name":"Bertil Schmidt","orcid":"https://orcid.org/0000-0003-2597-8331"},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bertil Schmidt","raw_affiliation_strings":["Parallel and Distributed Architectures Group, Institute of Computer Science, Johannes Gutenberg University Mainz, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Parallel and Distributed Architectures Group, Institute of Computer Science, Johannes Gutenberg University Mainz, Germany","institution_ids":["https://openalex.org/I197323543"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.666,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.8608499,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"27","issue":"8","first_page":"2329","last_page":"2340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10261","display_name":"Genetic Associations and Epidemiology","score":0.9955000281333923,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.991100013256073,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.987500011920929,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xeon-phi","display_name":"Xeon Phi","score":0.8887189626693726},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8266503214836121},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.74965500831604},{"id":"https://openalex.org/keywords/coprocessor","display_name":"Coprocessor","score":0.7358264923095703},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.6268607974052429},{"id":"https://openalex.org/keywords/xeon","display_name":"Xeon","score":0.5646710395812988},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5266744494438171},{"id":"https://openalex.org/keywords/epistasis","display_name":"Epistasis","score":0.44581204652786255},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1961459517478943},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.07983231544494629}],"concepts":[{"id":"https://openalex.org/C96972482","wikidata":"https://www.wikidata.org/wiki/Q1049168","display_name":"Xeon Phi","level":2,"score":0.8887189626693726},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8266503214836121},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.74965500831604},{"id":"https://openalex.org/C86111242","wikidata":"https://www.wikidata.org/wiki/Q859595","display_name":"Coprocessor","level":2,"score":0.7358264923095703},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.6268607974052429},{"id":"https://openalex.org/C145108525","wikidata":"https://www.wikidata.org/wiki/Q656154","display_name":"Xeon","level":2,"score":0.5646710395812988},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5266744494438171},{"id":"https://openalex.org/C61727976","wikidata":"https://www.wikidata.org/wiki/Q751748","display_name":"Epistasis","level":3,"score":0.44581204652786255},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1961459517478943},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.07983231544494629},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tpds.2015.2460247","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tpds.2015.2460247","pdf_url":null,"source":{"id":"https://openalex.org/S97130795","display_name":"IEEE Transactions on Parallel and Distributed Systems","issn_l":"1045-9219","issn":["1045-9219","1558-2183","2161-9883"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Parallel and Distributed Systems","raw_type":"journal-article"},{"id":"pmh:oai:dnet:ruc_________::3e207be392d754c28084d7dba91d083b","is_oa":true,"landing_page_url":"http://hdl.handle.net/2183/21755","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:dnet:ruc_________::3e207be392d754c28084d7dba91d083b","is_oa":true,"landing_page_url":"http://hdl.handle.net/2183/21755","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G494760652","display_name":null,"funder_award_id":"TIN2013-42148-P","funder_id":"https://openalex.org/F4320321595","funder_display_name":"Federaci\u00f3n Espa\u00f1ola de Enfermedades Raras"}],"funders":[{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320321595","display_name":"Federaci\u00f3n Espa\u00f1ola de Enfermedades Raras","ror":"https://ror.org/0348bpk17"},{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W116308793","https://openalex.org/W1571891226","https://openalex.org/W1657324220","https://openalex.org/W1822695366","https://openalex.org/W1990144378","https://openalex.org/W1990587696","https://openalex.org/W1996754389","https://openalex.org/W2002585960","https://openalex.org/W2010154192","https://openalex.org/W2018948898","https://openalex.org/W2024016913","https://openalex.org/W2045418416","https://openalex.org/W2058322567","https://openalex.org/W2063575312","https://openalex.org/W2068966425","https://openalex.org/W2070082005","https://openalex.org/W2070644791","https://openalex.org/W2088143111","https://openalex.org/W2094189284","https://openalex.org/W2108352360","https://openalex.org/W2111462305","https://openalex.org/W2112966225","https://openalex.org/W2117138514","https://openalex.org/W2122814645","https://openalex.org/W2124613228","https://openalex.org/W2129133658","https://openalex.org/W2129961269","https://openalex.org/W2133695315","https://openalex.org/W2134783591","https://openalex.org/W2149723686","https://openalex.org/W2152905639","https://openalex.org/W2154337852","https://openalex.org/W2156429378","https://openalex.org/W2168391147","https://openalex.org/W2171677905","https://openalex.org/W2295760680","https://openalex.org/W2467043670","https://openalex.org/W2952937494","https://openalex.org/W3144534400","https://openalex.org/W4242286475","https://openalex.org/W6676778485","https://openalex.org/W6765130925"],"related_works":["https://openalex.org/W2085105049","https://openalex.org/W2682544458","https://openalex.org/W2772158082","https://openalex.org/W2466690044","https://openalex.org/W1974923383","https://openalex.org/W3011641660","https://openalex.org/W2111946172","https://openalex.org/W2117500226","https://openalex.org/W2474201146","https://openalex.org/W2170268965"],"abstract_inverted_index":{"Development":[0],"of":[1,44,73,101,112,136],"new":[2],"methods":[3],"to":[4,26,55,66,90,105,133],"detect":[5],"pairwise":[6,92],"epistasis,":[7],"such":[8],"as":[9,22,49],"SNP-SNP":[10],"interactions,":[11],"in":[12,20],"Genome-Wide":[13],"Association":[14],"Studies":[15],"is":[16],"an":[17],"important":[18],"task":[19],"bioinformatics":[21],"they":[23],"can":[24],"help":[25],"explain":[27],"genetic":[28],"influences":[29],"on":[30,95,121],"diseases.":[31],"As":[32],"these":[33,61],"studies":[34],"are":[35,63,127],"time":[36],"consuming":[37],"operations,":[38],"some":[39],"tools":[40],"exploit":[41,68],"the":[42,57,69,107,134],"characteristics":[43],"different":[45],"hardware":[46],"accelerators":[47],"(such":[48],"GPUs":[50,79],"and":[51,80,117,123],"Xeon":[52,81,144],"Phi":[53,82,145],"coprocessors)":[54],"reduce":[56],"runtime.":[58],"Nevertheless,":[59],"all":[60],"approaches":[62,89],"not":[64],"able":[65],"efficiently":[67],"whole":[70],"computational":[71],"capacity":[72],"modern":[74],"clusters":[75,97],"that":[76],"contain":[77],"both":[78,99],"coprocessors.":[83],"In":[84],"this":[85],"paper":[86],"we":[87],"investigate":[88],"map":[91],"epistasic":[93],"detection":[94],"heterogeneous":[96],"using":[98],"types":[100],"accelerators.":[102],"The":[103],"runtimes":[104],"analyze":[106],"well-known":[108],"WTCCC":[109],"dataset":[110],"consisting":[111],"about":[113],"500":[114],"K":[115,119],"SNPs":[116],"5":[118],"samples":[120],"one":[122,141],"two":[124],"NVIDIA":[125],"K20m":[126],"reduced":[128],"by":[129],"27":[130],"percent":[131],"thanks":[132],"use":[135],"a":[137],"hybrid":[138],"approach":[139],"with":[140],"additional":[142],"single":[143],"coprocessor.":[146]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
