{"id":"https://openalex.org/W2005228904","doi":"https://doi.org/10.1109/tpds.2014.2368568","title":"Hadoop Recognition of Biomedical Named Entity Using Conditional Random Fields","display_name":"Hadoop Recognition of Biomedical Named Entity Using Conditional Random Fields","publication_year":2014,"publication_date":"2014-11-07","ids":{"openalex":"https://openalex.org/W2005228904","doi":"https://doi.org/10.1109/tpds.2014.2368568","mag":"2005228904"},"language":"en","primary_location":{"id":"doi:10.1109/tpds.2014.2368568","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tpds.2014.2368568","pdf_url":null,"source":{"id":"https://openalex.org/S97130795","display_name":"IEEE Transactions on Parallel and Distributed Systems","issn_l":"1045-9219","issn":["1045-9219","1558-2183","2161-9883"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Parallel and Distributed Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078793726","display_name":"Kenli Li","orcid":"https://orcid.org/0000-0002-2635-7716"},"institutions":[{"id":"https://openalex.org/I157455823","display_name":"SUNY New Paltz","ror":"https://ror.org/03j3dv688","country_code":"US","type":"education","lineage":["https://openalex.org/I157455823"]},{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Kenli Li","raw_affiliation_strings":["College of Information Science and Engineering, Hunan University, Changsha, Hunan, China","Department of Computer Science, State University of New York, New Paltz, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Department of Computer Science, State University of New York, New Paltz, New York","institution_ids":["https://openalex.org/I157455823"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Wei Ai","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Ai","raw_affiliation_strings":["College of Information Science and Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008574161","display_name":"Zhuo Tang","orcid":"https://orcid.org/0000-0001-9081-8153"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhuo Tang","raw_affiliation_strings":["College of Information Science and Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100403562","display_name":"Fan Zhang","orcid":"https://orcid.org/0000-0003-2629-2104"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":["Kavli Institute for Astrophysics and Space Research, Massachusetts Institute of Technology, Cambridge, MA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kavli Institute for Astrophysics and Space Research, Massachusetts Institute of Technology, Cambridge, MA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048350491","display_name":"Lingang Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lingang Jiang","raw_affiliation_strings":["College of Information Science and Engineering, Hunan University, Changsha, Hunan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087894632","display_name":"Keqin Li","orcid":"https://orcid.org/0000-0001-5224-4048"},"institutions":[{"id":"https://openalex.org/I157455823","display_name":"SUNY New Paltz","ror":"https://ror.org/03j3dv688","country_code":"US","type":"education","lineage":["https://openalex.org/I157455823"]},{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Keqin Li","raw_affiliation_strings":["College of Information Science and Engineering, Hunan University, Changsha, Hunan, China","Department of Computer Science, State University of New York, New Paltz, New York"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Hunan University, Changsha, Hunan, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Department of Computer Science, State University of New York, New Paltz, New York","institution_ids":["https://openalex.org/I157455823"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5103001853","display_name":"Kai Hwang","orcid":"https://orcid.org/0000-0003-2673-4953"},"institutions":[{"id":"https://openalex.org/I1174212","display_name":"University of Southern California","ror":"https://ror.org/03taz7m60","country_code":"US","type":"education","lineage":["https://openalex.org/I1174212"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kai Hwang","raw_affiliation_strings":["Department of Electrical Engineering, University of Southern California, Los Angeles, CA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, University of Southern California, Los Angeles, CA","institution_ids":["https://openalex.org/I1174212"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":11.1829,"has_fulltext":false,"cited_by_count":71,"citation_normalized_percentile":{"value":0.98409285,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"26","issue":"11","first_page":"3040","last_page":"3051"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11719","display_name":"Data Quality and Management","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/1803","display_name":"Management Science and Operations Research"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9886999726295471,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.9064148664474487},{"id":"https://openalex.org/keywords/viterbi-algorithm","display_name":"Viterbi algorithm","score":0.7975131273269653},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.6830704212188721},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6794635057449341},{"id":"https://openalex.org/keywords/broyden\u2013fletcher\u2013goldfarb\u2013shanno-algorithm","display_name":"Broyden\u2013Fletcher\u2013Goldfarb\u2013Shanno algorithm","score":0.5816932320594788},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.47727981209754944},{"id":"https://openalex.org/keywords/sequence-labeling","display_name":"Sequence labeling","score":0.44807153940200806},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.4179888963699341},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4057106375694275},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3720962405204773},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.28607845306396484},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.10674601793289185}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.9064148664474487},{"id":"https://openalex.org/C60582962","wikidata":"https://www.wikidata.org/wiki/Q83886","display_name":"Viterbi algorithm","level":3,"score":0.7975131273269653},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.6830704212188721},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6794635057449341},{"id":"https://openalex.org/C132721684","wikidata":"https://www.wikidata.org/wiki/Q2877013","display_name":"Broyden\u2013Fletcher\u2013Goldfarb\u2013Shanno algorithm","level":3,"score":0.5816932320594788},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.47727981209754944},{"id":"https://openalex.org/C35639132","wikidata":"https://www.wikidata.org/wiki/Q7452468","display_name":"Sequence labeling","level":3,"score":0.44807153940200806},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.4179888963699341},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4057106375694275},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3720962405204773},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.28607845306396484},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.10674601793289185},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C151319957","wikidata":"https://www.wikidata.org/wiki/Q752739","display_name":"Asynchronous communication","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tpds.2014.2368568","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tpds.2014.2368568","pdf_url":null,"source":{"id":"https://openalex.org/S97130795","display_name":"IEEE Transactions on Parallel and Distributed Systems","issn_l":"1045-9219","issn":["1045-9219","1558-2183","2161-9883"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Parallel and Distributed Systems","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2243909624","display_name":null,"funder_award_id":"61133005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2707076737","display_name":null,"funder_award_id":"61432005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G662528876","display_name":null,"funder_award_id":"61472124","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6925281636","display_name":"\u5f02\u6784\u5e76\u884c\u73af\u5883\u4e0b\u7684MapReduce\u8d44\u6e90\u8c03\u5ea6\u6a21\u578b\u4e0e\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61370095","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W588342568","https://openalex.org/W1523830076","https://openalex.org/W1775188621","https://openalex.org/W1971774955","https://openalex.org/W1977785545","https://openalex.org/W1983916667","https://openalex.org/W1987439595","https://openalex.org/W1991133427","https://openalex.org/W1997187731","https://openalex.org/W1999377398","https://openalex.org/W2014743842","https://openalex.org/W2020255380","https://openalex.org/W2021331223","https://openalex.org/W2024159593","https://openalex.org/W2034797903","https://openalex.org/W2036343664","https://openalex.org/W2047782770","https://openalex.org/W2051669046","https://openalex.org/W2061834489","https://openalex.org/W2062294426","https://openalex.org/W2072167633","https://openalex.org/W2078589894","https://openalex.org/W2096765155","https://openalex.org/W2099960657","https://openalex.org/W2103028001","https://openalex.org/W2107294465","https://openalex.org/W2109377779","https://openalex.org/W2114361266","https://openalex.org/W2117151385","https://openalex.org/W2122377078","https://openalex.org/W2126399065","https://openalex.org/W2142384583","https://openalex.org/W2147880316","https://openalex.org/W2151296343","https://openalex.org/W2156515921","https://openalex.org/W2156615793","https://openalex.org/W2159640576","https://openalex.org/W2160842254","https://openalex.org/W2160986985","https://openalex.org/W2757163186","https://openalex.org/W3151025115","https://openalex.org/W4211012425","https://openalex.org/W4236796448","https://openalex.org/W6617408755","https://openalex.org/W6631354626","https://openalex.org/W6637720683","https://openalex.org/W6646491544","https://openalex.org/W6682082992","https://openalex.org/W6683422774","https://openalex.org/W6683744218","https://openalex.org/W6744617434"],"related_works":["https://openalex.org/W2798423868","https://openalex.org/W2962906565","https://openalex.org/W3027026357","https://openalex.org/W3015678144","https://openalex.org/W2061027419","https://openalex.org/W2076440176","https://openalex.org/W3126392069","https://openalex.org/W2109665237","https://openalex.org/W2944198262","https://openalex.org/W3136048405"],"abstract_inverted_index":{"Processing":[0],"large":[1],"volumes":[2],"of":[3,16,45,90,107,149,159],"data":[4],"has":[5,27],"presented":[6],"a":[7,69,156],"challenging":[8],"issue,":[9],"particularly":[10],"in":[11,31,77,147],"data-redundant":[12],"systems.":[13],"As":[14],"one":[15],"the":[17,21,39,46,60,91,100,105,111,117,124,135],"most":[18,118],"recognized":[19],"models,":[20],"conditional":[22],"random":[23],"fields":[24],"(CRF)":[25],"model":[26,48],"been":[28],"widely":[29],"applied":[30],"biomedical":[32],"named":[33],"entity":[34],"recognition":[35],"(Bio-NER).":[36],"Due":[37],"to":[38,85,103],"internally":[40],"sequential":[41],"feature,":[42],"performance":[43,145],"improvement":[44,146],"CRF":[47,71,75,92],"is":[49],"nontrivial,":[50],"which":[51,80],"requires":[52],"new":[53],"parallelized":[54],"solutions.":[55],"By":[56],"combining":[57],"and":[58,64],"parallelizing":[59],"limited-memory":[61],"Broyden-Fletcher-Goldfarb-Shanno":[62],"(L-BFGS)":[63],"Viterbi":[65,113,125],"algorithms,":[66],"we":[67],"propose":[68],"parallel":[70,83],"algorithm":[72,98,115,126,137],"called":[73],"MapReduce":[74,95,101,112,129],"(MRCRF)":[76],"this":[78],"paper,":[79],"contains":[81],"two":[82,87],"sub-algorithms":[84],"handle":[86],"time-consuming":[88],"steps":[89],"model.":[93],"The":[94],"L-BFGS":[96],"(MRLB)":[97],"leverages":[99],"framework":[102],"enhance":[104],"capability":[106],"estimating":[108],"parameters.":[109],"Furthermore,":[110],"(MRVtb)":[114],"infers":[116],"likely":[119],"state":[120],"sequence":[121],"by":[122,142],"extending":[123],"with":[127],"another":[128],"job.":[130],"Experimental":[131],"results":[132],"show":[133],"that":[134],"MRCRF":[136],"outperforms":[138],"other":[139],"competing":[140],"methods":[141],"exhibiting":[143],"significant":[144],"terms":[148],"time":[150],"efficiency":[151],"as":[152,154],"well":[153],"preserving":[155],"guaranteed":[157],"level":[158],"correctness.":[160]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":15},{"year":2016,"cited_by_count":9},{"year":2015,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
