{"id":"https://openalex.org/W4407361829","doi":"https://doi.org/10.1109/tpami.2025.3540644","title":"Homeomorphism Prior for False Positive and Negative Problem in Medical Image Dense Contrastive Representation Learning","display_name":"Homeomorphism Prior for False Positive and Negative Problem in Medical Image Dense Contrastive Representation Learning","publication_year":2025,"publication_date":"2025-02-11","ids":{"openalex":"https://openalex.org/W4407361829","doi":"https://doi.org/10.1109/tpami.2025.3540644","pmid":"https://pubmed.ncbi.nlm.nih.gov/40031596"},"language":"en","primary_location":{"id":"doi:10.1109/tpami.2025.3540644","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tpami.2025.3540644","pdf_url":null,"source":{"id":"https://openalex.org/S199944782","display_name":"IEEE Transactions on Pattern Analysis and Machine Intelligence","issn_l":"0162-8828","issn":["0162-8828","1939-3539","2160-9292"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Pattern Analysis and Machine Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101476695","display_name":"Yuting He","orcid":"https://orcid.org/0000-0003-0878-8915"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuting He","raw_affiliation_strings":["Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications (Southeast University), Ministry of Education, Nanjing, China","Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications, Southeast University, Ministry of Education, Nanjing, China"],"raw_orcid":"https://orcid.org/0000-0003-0878-8915","affiliations":[{"raw_affiliation_string":"Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications (Southeast University), Ministry of Education, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications, Southeast University, Ministry of Education, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Boyu Wang","orcid":"https://orcid.org/0000-0002-6108-3589"},"institutions":[{"id":"https://openalex.org/I125749732","display_name":"Western University","ror":"https://ror.org/02grkyz14","country_code":"CA","type":"education","lineage":["https://openalex.org/I125749732"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Boyu Wang","raw_affiliation_strings":["Department of Computer Science, Western University, London, ON, Canada"],"raw_orcid":"https://orcid.org/0000-0002-6108-3589","affiliations":[{"raw_affiliation_string":"Department of Computer Science, Western University, London, ON, Canada","institution_ids":["https://openalex.org/I125749732"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064571884","display_name":"Rongjun Ge","orcid":"https://orcid.org/0000-0002-7084-1126"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongjun Ge","raw_affiliation_strings":["School of Instrument Science and Engineering, Southeast University, Nanjing, China"],"raw_orcid":"https://orcid.org/0000-0002-7084-1126","affiliations":[{"raw_affiliation_string":"School of Instrument Science and Engineering, Southeast University, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Yang Chen","orcid":"https://orcid.org/0000-0002-5660-6349"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yang Chen","raw_affiliation_strings":["Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications (Southeast University), Ministry of Education, Nanjing, China","Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications, Southeast University, Ministry of Education, Nanjing, China"],"raw_orcid":"https://orcid.org/0000-0002-5660-6349","affiliations":[{"raw_affiliation_string":"Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications (Southeast University), Ministry of Education, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications, Southeast University, Ministry of Education, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Guanyu Yang","orcid":"https://orcid.org/0000-0003-3704-1722"},"institutions":[{"id":"https://openalex.org/I76569877","display_name":"Southeast University","ror":"https://ror.org/04ct4d772","country_code":"CN","type":"education","lineage":["https://openalex.org/I76569877"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guanyu Yang","raw_affiliation_strings":["Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications (Southeast University), Ministry of Education, Nanjing, China","Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications, Southeast University, Ministry of Education, Nanjing, China"],"raw_orcid":"https://orcid.org/0000-0003-3704-1722","affiliations":[{"raw_affiliation_string":"Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications (Southeast University), Ministry of Education, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]},{"raw_affiliation_string":"Key Laboratory of New Generation Artificial Intelligence Technology and Its Interdisciplinary Applications, Southeast University, Ministry of Education, Nanjing, China","institution_ids":["https://openalex.org/I76569877"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100386630","display_name":"Shuo Li","orcid":"https://orcid.org/0000-0002-5184-3230"},"institutions":[{"id":"https://openalex.org/I58956616","display_name":"Case Western Reserve University","ror":"https://ror.org/051fd9666","country_code":"US","type":"education","lineage":["https://openalex.org/I58956616"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shuo Li","raw_affiliation_strings":["Department of Biomedical Engineering, Department of Computer and Data Science, Case Western Reserve University, Cleveland, OH, USA","Department of Biomedical Engineering and the Department of Computer and Data Science, Case Western Reserve University, Cleveland, OH, USA"],"raw_orcid":"https://orcid.org/0000-0002-5184-3230","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Department of Computer and Data Science, Case Western Reserve University, Cleveland, OH, USA","institution_ids":["https://openalex.org/I58956616"]},{"raw_affiliation_string":"Department of Biomedical Engineering and the Department of Computer and Data Science, Case Western Reserve University, Cleveland, OH, USA","institution_ids":["https://openalex.org/I58956616"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6891,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.81593296,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"47","issue":"5","first_page":"4122","last_page":"4139"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12702","display_name":"Brain Tumor Detection and Classification","score":0.9735999703407288,"subfield":{"id":"https://openalex.org/subfields/2808","display_name":"Neurology"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.96670001745224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7199454307556152},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5397326350212097},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.5280899405479431},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5280835628509521},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5159681439399719},{"id":"https://openalex.org/keywords/medical-imaging","display_name":"Medical imaging","score":0.5076576471328735},{"id":"https://openalex.org/keywords/contextual-image-classification","display_name":"Contextual image classification","score":0.4197671115398407},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.37814754247665405},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3501797914505005},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.34984657168388367}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7199454307556152},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5397326350212097},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.5280899405479431},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5280835628509521},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5159681439399719},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.5076576471328735},{"id":"https://openalex.org/C75294576","wikidata":"https://www.wikidata.org/wiki/Q5165192","display_name":"Contextual image classification","level":3,"score":0.4197671115398407},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.37814754247665405},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3501797914505005},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.34984657168388367},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tpami.2025.3540644","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tpami.2025.3540644","pdf_url":null,"source":{"id":"https://openalex.org/S199944782","display_name":"IEEE Transactions on Pattern Analysis and Machine Intelligence","issn_l":"0162-8828","issn":["0162-8828","1939-3539","2160-9292"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Pattern Analysis and Machine Intelligence","raw_type":"journal-article"},{"id":"pmid:40031596","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40031596","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on pattern analysis and machine intelligence","raw_type":null},{"id":"pmh:oai:HAL:hal-05096863v1","is_oa":false,"landing_page_url":"https://hal.science/hal-05096863","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Pattern Analysis and Machine Intelligence, 2025, 47 (5), pp.4122-4139. &#x27E8;10.1109/TPAMI.2025.3540644&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Gender equality","id":"https://metadata.un.org/sdg/5"}],"awards":[{"id":"https://openalex.org/G4682584523","display_name":null,"funder_award_id":"BK20210291","funder_id":"https://openalex.org/F4320322769","funder_display_name":"Natural Science Foundation of Jiangsu Province"},{"id":"https://openalex.org/G5125574147","display_name":null,"funder_award_id":"62101249","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6592847144","display_name":null,"funder_award_id":"T2225025","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7677918943","display_name":null,"funder_award_id":"82441021","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322769","display_name":"Natural Science Foundation of Jiangsu Province","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":87,"referenced_works":["https://openalex.org/W114517082","https://openalex.org/W1494041778","https://openalex.org/W1901129140","https://openalex.org/W1909740415","https://openalex.org/W1969094805","https://openalex.org/W1977056427","https://openalex.org/W1995215698","https://openalex.org/W1996118086","https://openalex.org/W2000439270","https://openalex.org/W2024798729","https://openalex.org/W2104276184","https://openalex.org/W2108598243","https://openalex.org/W2109705661","https://openalex.org/W2115728676","https://openalex.org/W2120282994","https://openalex.org/W2142431032","https://openalex.org/W2142514727","https://openalex.org/W2148157540","https://openalex.org/W2163922914","https://openalex.org/W2165023525","https://openalex.org/W2171425630","https://openalex.org/W2194321275","https://openalex.org/W2286261512","https://openalex.org/W2592929672","https://openalex.org/W2611650229","https://openalex.org/W2738871625","https://openalex.org/W2787740020","https://openalex.org/W2883725317","https://openalex.org/W2891631795","https://openalex.org/W2918257301","https://openalex.org/W2919115771","https://openalex.org/W2922479016","https://openalex.org/W2952222533","https://openalex.org/W2963420272","https://openalex.org/W2964106616","https://openalex.org/W2964250774","https://openalex.org/W2964317695","https://openalex.org/W2966333895","https://openalex.org/W2979378912","https://openalex.org/W2979651795","https://openalex.org/W2979907638","https://openalex.org/W3016836174","https://openalex.org/W3025299467","https://openalex.org/W3034199407","https://openalex.org/W3035241330","https://openalex.org/W3035295689","https://openalex.org/W3035524453","https://openalex.org/W3083087624","https://openalex.org/W3087507349","https://openalex.org/W3106743555","https://openalex.org/W3136424010","https://openalex.org/W3149170955","https://openalex.org/W3171007011","https://openalex.org/W3171581326","https://openalex.org/W3172615411","https://openalex.org/W3175697334","https://openalex.org/W3177029726","https://openalex.org/W3177828909","https://openalex.org/W3180275357","https://openalex.org/W3194662286","https://openalex.org/W3207322291","https://openalex.org/W4213131680","https://openalex.org/W4250482878","https://openalex.org/W4285505938","https://openalex.org/W4287073192","https://openalex.org/W4287181769","https://openalex.org/W4288064428","https://openalex.org/W4296935086","https://openalex.org/W4312382935","https://openalex.org/W4312977257","https://openalex.org/W4386076598","https://openalex.org/W4402509827","https://openalex.org/W4404294187","https://openalex.org/W6631190155","https://openalex.org/W6681096077","https://openalex.org/W6727690538","https://openalex.org/W6766978945","https://openalex.org/W6774670964","https://openalex.org/W6779992872","https://openalex.org/W6780191644","https://openalex.org/W6786093290","https://openalex.org/W6802387851","https://openalex.org/W6849378482","https://openalex.org/W6849541326","https://openalex.org/W6873849708","https://openalex.org/W6903466639","https://openalex.org/W7015890786"],"related_works":["https://openalex.org/W2062195135","https://openalex.org/W2795079307","https://openalex.org/W2793058541","https://openalex.org/W1983629434","https://openalex.org/W2055929693","https://openalex.org/W4324271173","https://openalex.org/W1967645776","https://openalex.org/W2352227742","https://openalex.org/W4390679071","https://openalex.org/W3006966347"],"abstract_inverted_index":{"Dense":[0],"contrastive":[1],"representation":[2,181],"learning":[3,9,66,89,130,163,182],"(DCRL)":[4],"has":[5],"greatly":[6],"improved":[7],"the":[8,22,33,69,93,107,111,119,152,156,162,195],"efficiency":[10,164],"for":[11,80,155],"image":[12,27],"dense":[13,30,82],"prediction":[14],"tasks,":[15],"showing":[16],"its":[17],"great":[18,200],"potential":[19],"to":[20,72,100,105,150],"reduce":[21],"large":[23],"costs":[24],"of":[25,35,46,95,113,122,131,167],"medical":[26,36,96],"collection":[28],"and":[29,50,74,98,124,128,165],"annotation.":[31],"However,":[32],"properties":[34],"images":[37,97],"make":[38],"unreliable":[39],"correspondence":[40,78,109,157],"discovery,":[41],"bringing":[42],"an":[43,126],"open":[44],"problem":[45],"large-scale":[47],"false":[48],"positive":[49,170],"negative":[51,132],"(FP&N)":[52],"pairs":[53,133,171],"in":[54,148,184],"DCRL.":[55],"In":[56],"this":[57],"paper,":[58],"we":[59],"propose":[60],"GEoMetric":[61],"vIsual":[62],"deNse":[63],"sImilarity":[64],"(GEMINI)":[65],"which":[67,91,144,193],"embeds":[68],"homeomorphism":[70,88,94],"prior":[71],"DCRL":[73],"enables":[75],"a":[76,86,102,139,208],"reliable":[77],"discovery":[79],"effective":[81],"contrast.":[83],"We":[84,136,173,202],"proposes":[85,138],"deformable":[87,103],"(DHL)":[90],"models":[92],"learns":[99],"estimate":[101],"mapping":[104],"predict":[106],"pixels'":[108],"under":[110],"condition":[112],"topological":[114],"preservation.":[115],"It":[116,159],"effectively":[117],"reduces":[118],"searching":[120],"space":[121],"pairing":[123],"drives":[125],"implicit":[127],"soft":[129],"via":[134],"gradient.":[135],"also":[137],"geometric":[140],"semantic":[141,146],"similarity":[142],"(GSS)":[143],"extracts":[145],"information":[147],"features":[149],"measure":[151],"alignment":[153],"degree":[154],"learning.":[158],"will":[160,203],"promote":[161],"performance":[166],"deformation,":[168],"constructing":[169],"reliably.":[172],"implement":[174],"two":[175,179],"practical":[176],"variants":[177],"on":[178,190],"typical":[180],"tasks":[183],"our":[185,199,205],"experiments.":[186],"Our":[187],"promising":[188],"results":[189],"seven":[191],"datasets":[192],"outperform":[194],"existing":[196],"methods":[197],"show":[198],"superiority.":[201],"release":[204],"code":[206],"at":[207],"companion":[209],"website.":[210]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":2}],"updated_date":"2025-12-21T01:58:51.020947","created_date":"2025-10-10T00:00:00"}
