{"id":"https://openalex.org/W4392607741","doi":"https://doi.org/10.1109/tnse.2024.3373652","title":"Multi-Network Graph Contrastive Learning for Cancer Driver Gene Identification","display_name":"Multi-Network Graph Contrastive Learning for Cancer Driver Gene Identification","publication_year":2024,"publication_date":"2024-03-08","ids":{"openalex":"https://openalex.org/W4392607741","doi":"https://doi.org/10.1109/tnse.2024.3373652"},"language":"en","primary_location":{"id":"doi:10.1109/tnse.2024.3373652","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tnse.2024.3373652","pdf_url":null,"source":{"id":"https://openalex.org/S2484352698","display_name":"IEEE Transactions on Network Science and Engineering","issn_l":"2327-4697","issn":["2327-4697","2334-329X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Network Science and Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053073532","display_name":"Wei Peng","orcid":"https://orcid.org/0000-0002-9572-951X"},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wei Peng","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, ChinaChina","Computer Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China"],"affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, ChinaChina","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Computer Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082749546","display_name":"Zhengnan Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengnan Zhou","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, ChinaChina","Computer Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China"],"affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, ChinaChina","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Computer Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100752235","display_name":"Wei Dai","orcid":null},"institutions":[{"id":"https://openalex.org/I10660446","display_name":"Kunming University of Science and Technology","ror":"https://ror.org/00xyeez13","country_code":"CN","type":"education","lineage":["https://openalex.org/I10660446"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei Dai","raw_affiliation_strings":["Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","Computer Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China","Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, ChinaChina"],"affiliations":[{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Computer Technology Application Key Lab of Yunnan Province, Kunming University of Science and Technology, Kunming, China","institution_ids":["https://openalex.org/I10660446"]},{"raw_affiliation_string":"Faculty of Information Engineering and Automation, Kunming University of Science and Technology, Kunming, ChinaChina","institution_ids":["https://openalex.org/I10660446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086266742","display_name":"Ning Yu","orcid":"https://orcid.org/0000-0002-1385-6882"},"institutions":[{"id":"https://openalex.org/I4864440","display_name":"SUNY Brockport","ror":"https://ror.org/0306aeb62","country_code":"US","type":"education","lineage":["https://openalex.org/I4864440"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ning Yu","raw_affiliation_strings":["Department of Computing Sciences, College at Brockport, State University of New York, Brockport, NY, USA","The College at Brockport, Department of Computing Sciences, 350 New Campus Drive, Brockport, State University of New York, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computing Sciences, College at Brockport, State University of New York, Brockport, NY, USA","institution_ids":["https://openalex.org/I4864440"]},{"raw_affiliation_string":"The College at Brockport, Department of Computing Sciences, 350 New Campus Drive, Brockport, State University of New York, USA","institution_ids":["https://openalex.org/I4864440"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100438360","display_name":"Jianxin Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China","Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Hunan Provincial Key Lab on Bioinformatics, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5053073532"],"corresponding_institution_ids":["https://openalex.org/I10660446"],"apc_list":null,"apc_paid":null,"fwci":5.8482,"has_fulltext":false,"cited_by_count":25,"citation_normalized_percentile":{"value":0.96987128,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"11","issue":"4","first_page":"3430","last_page":"3440"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9832000136375427,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5829707980155945},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5773210525512695},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.452612966299057},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35894161462783813},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23467084765434265},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.10262537002563477}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5829707980155945},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5773210525512695},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.452612966299057},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35894161462783813},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23467084765434265},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.10262537002563477},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tnse.2024.3373652","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tnse.2024.3373652","pdf_url":null,"source":{"id":"https://openalex.org/S2484352698","display_name":"IEEE Transactions on Network Science and Engineering","issn_l":"2327-4697","issn":["2327-4697","2334-329X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Network Science and Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2601088333","display_name":null,"funder_award_id":"61972185","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W2017138237","https://openalex.org/W2044433401","https://openalex.org/W2088891952","https://openalex.org/W2100761975","https://openalex.org/W2107665951","https://openalex.org/W2114031931","https://openalex.org/W2148266291","https://openalex.org/W2152176732","https://openalex.org/W2158485828","https://openalex.org/W2159987716","https://openalex.org/W2273246571","https://openalex.org/W2442835468","https://openalex.org/W2566227895","https://openalex.org/W2614443510","https://openalex.org/W2789725201","https://openalex.org/W2801400022","https://openalex.org/W2898789672","https://openalex.org/W2900569176","https://openalex.org/W2912334138","https://openalex.org/W2913030342","https://openalex.org/W2921650138","https://openalex.org/W2949066452","https://openalex.org/W2964321699","https://openalex.org/W2998468179","https://openalex.org/W3017779111","https://openalex.org/W3033039844","https://openalex.org/W3043738080","https://openalex.org/W3047083370","https://openalex.org/W3087901980","https://openalex.org/W3156270925","https://openalex.org/W3172710079","https://openalex.org/W3206417123","https://openalex.org/W4205812412","https://openalex.org/W4210917993","https://openalex.org/W4283785215","https://openalex.org/W4295885518","https://openalex.org/W4300861664","https://openalex.org/W4315865919","https://openalex.org/W4362457921","https://openalex.org/W4365460342","https://openalex.org/W4382239148","https://openalex.org/W4385768196","https://openalex.org/W6726873649","https://openalex.org/W6779940601","https://openalex.org/W6784694379"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Identifying":[0],"driver":[1,66,96,203,237,277],"genes":[2,26,34,238],"contributing":[3],"to":[4,42,60,93,142,172,190,200,227],"the":[5,43,62,74,157,161,174,180,192,212,215,220,223,232,246,266,273],"occurrence":[6],"and":[7,18,114,129,219,242,255,271],"development":[8],"of":[9,64,71,125,275],"cancers":[10],"plays":[11],"a":[12,87,133,152,186,228,261],"critical":[13],"role":[14],"in":[15,38,45,117,148,179,197,235],"cancer":[16,65,95,202,270,276],"research":[17],"treatment.":[19],"Some":[20],"recent":[21],"computational":[22],"approaches":[23],"identify":[24,94],"cancer-driver":[25,33],"based":[27,107],"on":[28,52,108,265],"gene":[29,39,46,54,67,102,111,115,127,145,158,176,193,258],"networks,":[30,48],"assuming":[31],"that":[32,209,250],"perform":[35,122],"essential":[36],"functions":[37],"networks.":[40,182],"Due":[41],"noise":[44],"function":[47],"many":[49],"works":[50],"focus":[51],"integrating":[53],"networks":[55,103,128,150,171,259],"derived":[56],"from":[57,151,160,285],"multi-omics":[58,79],"datasets":[59],"improve":[61],"accuracy":[63,274],"detection.":[68],"However,":[69],"most":[70],"them":[72,131],"ignore":[73],"information":[75],"interactions":[76,256],"between":[77,257],"these":[78,126],"datasets.":[80],"In":[81],"this":[82],"work,":[83],"we":[84,121,184],"propose":[85],"MNGCL,":[86],"Multi-Network":[88],"Graph":[89],"Contrastive":[90],"Learning":[91],"method":[92],"genes.":[97,204],"It":[98],"first":[99],"constructs":[100],"three":[101,167,181],"as":[104],"different":[105,149,168],"views":[106],"protein":[109],"interactions,":[110],"semantic":[112],"similarities,":[113],"co-occurrence":[116],"signaling":[118],"pathways.":[119],"Then,":[120],"data":[123],"augmentation":[124],"input":[130],"into":[132],"graph":[134,169],"contrastive":[135],"learning":[136],"(GCL)":[137],"encoder":[138,163],"with":[139],"shared":[140],"parameters":[141],"learn":[143],"consistent":[144],"feature":[146,177,194],"representation":[147],"holistic":[153],"perspective.":[154],"After":[155],"that,":[156],"features":[159],"GCL":[162],"are":[164],"passed":[165],"through":[166],"convolutional":[170],"generate":[173],"unique":[175],"representations":[178,195],"Finally,":[183],"used":[185],"logistic":[187],"regression":[188],"model":[189,252],"fuse":[191],"generated":[196],"each":[198],"network":[199],"predict":[201],"The":[205,279],"experimental":[206],"results":[207],"show":[208,249],"MNGCL":[210],"improves":[211],"area":[213,221],"under":[214,222],"ROC":[216],"curve":[217,225],"(AUC)":[218],"precision-recall":[224],"(AUPRC)":[226],"greater":[229],"extent":[230],"than":[231],"existing":[233],"methods":[234],"identifying":[236],"for":[239],"both":[240],"pan-cancer":[241],"single-type":[243],"cancers.":[244],"Furthermore,":[245],"ablation":[247],"studies":[248],"our":[251],"capturing":[253],"dependencies":[254],"provided":[260],"more":[262],"comprehensive":[263],"perspective":[264],"molecular":[267],"mechanisms":[268],"underlying":[269],"improved":[272],"identification.":[278],"source":[280],"code":[281],"can":[282],"be":[283],"obtained":[284],"<uri":[286],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[287],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">https://github.com/weiba/MNGCL.</uri>":[288]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":8}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
