{"id":"https://openalex.org/W4285121953","doi":"https://doi.org/10.1109/tnse.2022.3185717","title":"Temporal-Spatial Analysis of the Essentiality of Hub Proteins in Protein-Protein Interaction Networks","display_name":"Temporal-Spatial Analysis of the Essentiality of Hub Proteins in Protein-Protein Interaction Networks","publication_year":2022,"publication_date":"2022-06-23","ids":{"openalex":"https://openalex.org/W4285121953","doi":"https://doi.org/10.1109/tnse.2022.3185717"},"language":"en","primary_location":{"id":"doi:10.1109/tnse.2022.3185717","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tnse.2022.3185717","pdf_url":null,"source":{"id":"https://openalex.org/S2484352698","display_name":"IEEE Transactions on Network Science and Engineering","issn_l":"2327-4697","issn":["2327-4697","2334-329X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Network Science and Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077069371","display_name":"Xiangmao Meng","orcid":"https://orcid.org/0000-0002-7966-551X"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xiangmao Meng","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100719770","display_name":"Wen-Kai Li","orcid":"https://orcid.org/0009-0008-7423-0446"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenkai Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046328933","display_name":"Ju Xiang","orcid":"https://orcid.org/0000-0002-3045-5706"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]},{"id":"https://openalex.org/I165911609","display_name":"Changsha Medical University","ror":"https://ror.org/05dt7z971","country_code":"CN","type":"education","lineage":["https://openalex.org/I165911609"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ju Xiang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China","Department of Basic Medical Sciences, Changsha Medical University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]},{"raw_affiliation_string":"Department of Basic Medical Sciences, Changsha Medical University, Changsha, China","institution_ids":["https://openalex.org/I165911609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016134532","display_name":"Hayat Dino Bedru","orcid":"https://orcid.org/0000-0002-3878-2197"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hayat Dino Bedru","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101589261","display_name":"Wenkang Wang","orcid":"https://orcid.org/0009-0001-9930-5853"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenkang Wang","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091157395","display_name":"Fang\u2010Xiang Wu","orcid":"https://orcid.org/0000-0002-4593-9332"},"institutions":[{"id":"https://openalex.org/I32625721","display_name":"University of Saskatchewan","ror":"https://ror.org/010x8gc63","country_code":"CA","type":"education","lineage":["https://openalex.org/I32625721"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Fang-Xiang Wu","raw_affiliation_strings":["Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mechanical Engineering, University of Saskatchewan, Saskatoon, SK, Canada","institution_ids":["https://openalex.org/I32625721"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100719013","display_name":"Min Li","orcid":"https://orcid.org/0000-0002-0188-1394"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Min Li","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5077069371"],"corresponding_institution_ids":["https://openalex.org/I139660479"],"apc_list":null,"apc_paid":null,"fwci":1.5597,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.82833804,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"9","issue":"5","first_page":"3504","last_page":"3514"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9926000237464905,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/centrality","display_name":"Centrality","score":0.884615957736969},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.6390321850776672},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6206777095794678},{"id":"https://openalex.org/keywords/construct","display_name":"Construct (python library)","score":0.5351309180259705},{"id":"https://openalex.org/keywords/network-analysis","display_name":"Network analysis","score":0.5027120113372803},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.4771120846271515},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4227464199066162},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4202914535999298},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37078237533569336},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23167362809181213},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17561399936676025},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.14392179250717163},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.08850735425949097}],"concepts":[{"id":"https://openalex.org/C53811970","wikidata":"https://www.wikidata.org/wiki/Q5062194","display_name":"Centrality","level":2,"score":0.884615957736969},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.6390321850776672},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6206777095794678},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.5351309180259705},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.5027120113372803},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.4771120846271515},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4227464199066162},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4202914535999298},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37078237533569336},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23167362809181213},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17561399936676025},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.14392179250717163},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.08850735425949097},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tnse.2022.3185717","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tnse.2022.3185717","pdf_url":null,"source":{"id":"https://openalex.org/S2484352698","display_name":"IEEE Transactions on Network Science and Engineering","issn_l":"2327-4697","issn":["2327-4697","2334-329X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Network Science and Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4043378463","display_name":null,"funder_award_id":"61832019","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5788922392","display_name":null,"funder_award_id":"kq2106075","funder_id":"https://openalex.org/F4320336634","funder_display_name":"Training Program for Excellent Young Innovators of Changsha"},{"id":"https://openalex.org/G7291385876","display_name":null,"funder_award_id":"2021M703633","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320336634","display_name":"Training Program for Excellent Young Innovators of Changsha","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W1980800453","https://openalex.org/W2005740247","https://openalex.org/W2006683252","https://openalex.org/W2007245700","https://openalex.org/W2007781735","https://openalex.org/W2012643478","https://openalex.org/W2012852001","https://openalex.org/W2024839376","https://openalex.org/W2026353653","https://openalex.org/W2036799174","https://openalex.org/W2043004358","https://openalex.org/W2043764521","https://openalex.org/W2056196348","https://openalex.org/W2057065397","https://openalex.org/W2063961010","https://openalex.org/W2077386490","https://openalex.org/W2080486423","https://openalex.org/W2097520363","https://openalex.org/W2102221598","https://openalex.org/W2102701612","https://openalex.org/W2109248504","https://openalex.org/W2115746733","https://openalex.org/W2130790725","https://openalex.org/W2140948740","https://openalex.org/W2148678328","https://openalex.org/W2149119575","https://openalex.org/W2152285853","https://openalex.org/W2152933096","https://openalex.org/W2155019453","https://openalex.org/W2168264491","https://openalex.org/W2201354711","https://openalex.org/W2415262931","https://openalex.org/W2476805513","https://openalex.org/W2512143001","https://openalex.org/W2613629789","https://openalex.org/W2750770743","https://openalex.org/W2765203444","https://openalex.org/W2799669072","https://openalex.org/W2890631273","https://openalex.org/W2909924790","https://openalex.org/W2912802963","https://openalex.org/W2915554882","https://openalex.org/W2917858269","https://openalex.org/W2945677156","https://openalex.org/W2991321419","https://openalex.org/W3008847215","https://openalex.org/W3037436972","https://openalex.org/W3094213757","https://openalex.org/W3121027314","https://openalex.org/W3141892660","https://openalex.org/W3154646048","https://openalex.org/W3161652179","https://openalex.org/W3175752499","https://openalex.org/W3198527636","https://openalex.org/W4200540728","https://openalex.org/W4220788456"],"related_works":["https://openalex.org/W2322248538","https://openalex.org/W2769306272","https://openalex.org/W3007305076","https://openalex.org/W2356638222","https://openalex.org/W2626653991","https://openalex.org/W2161532087","https://openalex.org/W1663961612","https://openalex.org/W1990435776","https://openalex.org/W118100147","https://openalex.org/W2135602072"],"abstract_inverted_index":{"Hubs":[0],"are":[1,13,61,213],"generally":[2],"defined":[3],"as":[4],"nodes":[5],"with":[6,40,117,185],"a":[7,41],"high":[8],"degree":[9,143],"centrality,":[10],"and":[11,64,66,70,89,104,121,173,195,203],"they":[12],"important":[14],"for":[15,93],"maintaining":[16],"the":[17,46,53,68,78,98,101,133,141,149,158,175,182],"stability":[18],"of":[19,48,52,73,80,151,160,178,188],"complex":[20],"networks.":[21,75,130,190],"Previous":[22],"studies":[23,55],"have":[24,86],"shown":[25],"that":[26,60,157,209],"hub":[27,152,211],"proteins":[28,180,212],"tend":[29],"to":[30,44,125,147,216],"be":[31,91,217],"essential":[32,179],"in":[33,107,110],"protein-protein":[34],"interaction":[35],"(PPI)":[36],"networks,":[37,109,138],"providing":[38],"us":[39],"new":[42],"way":[43],"analyze":[45],"essentiality":[47,106,150],"proteins.":[49,153],"Unfortunately,":[50],"most":[51],"existing":[54],"leverage":[56],"static":[57,204],"PPI":[58,74,108,115,129,137,189],"networks":[59,116],"both":[62],"incomplete":[63],"noisy":[65],"ignore":[67],"temporal":[69],"spatial":[71],"characteristics":[72],"Benefiting":[76],"from":[77],"development":[79],"high-throughput":[81],"technologies,":[82],"abundant":[83],"multi-biological":[84],"datasets":[85],"been":[87],"accumulated":[88],"can":[90,168],"used":[92],"network":[94,102],"analysis.":[95],"To":[96],"reexamine":[97],"relationship":[99],"between":[100],"centrality":[103,144],"protein":[105],"this":[111],"study,":[112],"we":[113,139,192],"integrated":[114],"gene":[118,161],"expression":[119,162],"data":[120,163],"subcellular":[122,165],"localization":[123,166],"information":[124,167],"construct":[126],"temporal-spatial":[127,135,183],"dynamic":[128,136],"Based":[131],"on":[132],"constructed":[134],"introduced":[140],"maximum":[142],"(MDC)":[145],"method":[146],"evaluate":[148],"Our":[154],"results":[155,207],"illustrate":[156],"integration":[159],"or":[164],"significantly":[169],"reduce":[170],"noise":[171],"effects":[172],"improve":[174],"identification":[176],"accuracy":[177],"through":[181],"analysis":[184],"disparate":[186],"sources":[187],"Moreover,":[191],"redefined":[193],"hubs":[194,202],"classified":[196],"them":[197],"into":[198],"two":[199],"types:":[200],"temporospatial":[201,210],"hubs.":[205],"The":[206],"show":[208],"more":[214],"likely":[215],"essential.":[218]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":4}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
