{"id":"https://openalex.org/W4400702846","doi":"https://doi.org/10.1109/tnnls.2025.3646122","title":"Graph Transformers: A Survey","display_name":"Graph Transformers: A Survey","publication_year":2026,"publication_date":"2026-01-12","ids":{"openalex":"https://openalex.org/W4400702846","doi":"https://doi.org/10.1109/tnnls.2025.3646122","pmid":"https://pubmed.ncbi.nlm.nih.gov/41525531"},"language":"en","primary_location":{"id":"doi:10.1109/tnnls.2025.3646122","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tnnls.2025.3646122","pdf_url":null,"source":{"id":"https://openalex.org/S4210175523","display_name":"IEEE Transactions on Neural Networks and Learning Systems","issn_l":"2162-237X","issn":["2162-237X","2162-2388"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Neural Networks and Learning Systems","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/2407.09777","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5045844946","display_name":"Ahsan Shehzad","orcid":"https://orcid.org/0000-0003-2116-2183"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ahsan Shehzad","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0003-2116-2183","affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Feng Xia","orcid":"https://orcid.org/0000-0002-8324-1859"},"institutions":[{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Feng Xia","raw_affiliation_strings":["School of Computing Technologies, RMIT University, Melbourne, VIC, Australia"],"raw_orcid":"https://orcid.org/0000-0002-8324-1859","affiliations":[{"raw_affiliation_string":"School of Computing Technologies, RMIT University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I82951845"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109778254","display_name":"Shagufta Abid","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shagufta Abid","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0009-0003-5024-8880","affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004286514","display_name":"Ciyuan Peng","orcid":"https://orcid.org/0000-0002-3580-5402"},"institutions":[{"id":"https://openalex.org/I149672521","display_name":"Federation University","ror":"https://ror.org/05qbzwv83","country_code":"AU","type":"education","lineage":["https://openalex.org/I149672521"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Ciyuan Peng","raw_affiliation_strings":["Institute of Innovation, Science and Sustainability, Federation University Australia, Ballarat, VIC, Australia"],"raw_orcid":"https://orcid.org/0000-0002-3580-5402","affiliations":[{"raw_affiliation_string":"Institute of Innovation, Science and Sustainability, Federation University Australia, Ballarat, VIC, Australia","institution_ids":["https://openalex.org/I149672521"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004781883","display_name":"Shuo Yu","orcid":"https://orcid.org/0000-0003-1124-9509"},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuo Yu","raw_affiliation_strings":["School of Computer Science and Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0003-1124-9509","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Dongyu Zhang","orcid":"https://orcid.org/0000-0002-7683-5560"},"institutions":[{"id":"https://openalex.org/I156292868","display_name":"Dalian University of Foreign Languages","ror":"https://ror.org/008a8z393","country_code":"CN","type":"education","lineage":["https://openalex.org/I156292868"]},{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dongyu Zhang","raw_affiliation_strings":["School of Foreign Languages and the School of Software Technology, Dalian University of Technology, Dalian, China"],"raw_orcid":"https://orcid.org/0000-0002-7683-5560","affiliations":[{"raw_affiliation_string":"School of Foreign Languages and the School of Software Technology, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I156292868","https://openalex.org/I27357992"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067214173","display_name":"Karin Verspoor","orcid":"https://orcid.org/0000-0002-8661-1544"},"institutions":[{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Karin Verspoor","raw_affiliation_strings":["School of Computing Technologies, RMIT University, Melbourne, VIC, Australia"],"raw_orcid":"https://orcid.org/0000-0002-8661-1544","affiliations":[{"raw_affiliation_string":"School of Computing Technologies, RMIT University, Melbourne, VIC, Australia","institution_ids":["https://openalex.org/I82951845"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":167.8069,"has_fulltext":true,"cited_by_count":34,"citation_normalized_percentile":{"value":0.99976509,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"37","issue":"7","first_page":"3052","last_page":"3071"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.9580000042915344,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.5225929021835327},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48250484466552734},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37588319182395935},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.3266342282295227},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.21239709854125977},{"id":"https://openalex.org/keywords/electrical-engineering","display_name":"Electrical engineering","score":0.18080323934555054},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.15313464403152466},{"id":"https://openalex.org/keywords/voltage","display_name":"Voltage","score":0.09013709425926208}],"concepts":[{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.5225929021835327},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48250484466552734},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37588319182395935},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.3266342282295227},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.21239709854125977},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.18080323934555054},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.15313464403152466},{"id":"https://openalex.org/C165801399","wikidata":"https://www.wikidata.org/wiki/Q25428","display_name":"Voltage","level":2,"score":0.09013709425926208}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1109/tnnls.2025.3646122","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tnnls.2025.3646122","pdf_url":null,"source":{"id":"https://openalex.org/S4210175523","display_name":"IEEE Transactions on Neural Networks and Learning Systems","issn_l":"2162-237X","issn":["2162-237X","2162-2388"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Neural Networks and Learning Systems","raw_type":"journal-article"},{"id":"pmid:41525531","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41525531","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on neural networks and learning systems","raw_type":null},{"id":"pmh:oai:arXiv.org:2407.09777","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.09777","pdf_url":"https://arxiv.org/pdf/2407.09777","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"doi:10.48550/arxiv.2407.09777","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.2407.09777","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:2407.09777","is_oa":true,"landing_page_url":"http://arxiv.org/abs/2407.09777","pdf_url":"https://arxiv.org/pdf/2407.09777","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3339201494","display_name":null,"funder_award_id":"62576075","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4400702846.pdf","grobid_xml":"https://content.openalex.org/works/W4400702846.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W4391375266","https://openalex.org/W1979597421","https://openalex.org/W2007980826","https://openalex.org/W2061531152","https://openalex.org/W3002753104","https://openalex.org/W2077600819","https://openalex.org/W2142036596","https://openalex.org/W2072657027","https://openalex.org/W2600246793"],"abstract_inverted_index":{"Graph":[0],"transformers":[1,23,91],"are":[2],"a":[3,10,87],"recent":[4,43],"advancement":[5],"in":[6,47,129,140],"machine":[7],"learning,":[8],"offering":[9],"new":[11],"class":[12],"of":[13,42,56,65,105,116],"neural":[14],"network":[15],"models":[16,119],"for":[17,102,120,168],"graph-structured":[18],"data.":[19],"The":[20],"synergy":[21],"between":[22],"and":[24,30,45,58,76,96,123,146,149,152,155,163],"graph":[25,48,66,73,77,90,106,117,169],"learning":[26],"demonstrates":[27],"strong":[28],"performance":[29],"versatility":[31],"across":[32],"various":[33],"graph-related":[34],"tasks.":[35],"This":[36],"survey":[37],"provides":[38],"an":[39],"in-depth":[40],"review":[41],"progress":[44],"challenges":[46,139],"transformer":[49,82,107,118,170],"research.":[50,171],"We":[51,60],"begin":[52],"with":[53],"foundational":[54],"concepts":[55],"graphs":[57],"transformers.":[59],"then":[61],"explore":[62],"design":[63],"perspectives":[64],"transformers,":[67],"focusing":[68],"on":[69,93],"how":[70],"they":[71],"integrate":[72],"inductive":[74],"biases":[75],"attention":[78],"mechanisms":[79],"into":[80],"the":[81,114,141],"architecture.":[83],"Furthermore,":[84],"we":[85,112,136],"propose":[86],"taxonomy":[88],"classifying":[89],"based":[92],"depth,":[94],"scalability,":[95],"pretraining":[97],"strategies,":[98],"summarizing":[99],"key":[100],"principles":[101],"effective":[103],"development":[104],"models.":[108],"Beyond":[109],"technical":[110],"analysis,":[111],"discuss":[113],"applications":[115],"node-level,":[121],"edge-level,":[122],"graph-level":[124],"tasks,":[125],"exploring":[126],"their":[127],"potential":[128],"other":[130],"application":[131],"scenarios":[132],"as":[133,144,158,160],"well.":[134],"Finally,":[135],"identify":[137],"remaining":[138],"field,":[142],"such":[143],"scalability":[145],"efficiency,":[147],"generalization":[148],"robustness,":[150],"interpretability":[151],"explainability,":[153],"dynamic":[154],"complex":[156],"graphs,":[157],"well":[159],"data":[161],"quality":[162],"diversity,":[164],"charting":[165],"future":[166],"directions":[167]},"counts_by_year":[{"year":2026,"cited_by_count":23},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":1}],"updated_date":"2026-08-18T07:49:30.821534","created_date":"2024-07-17T00:00:00"}
