{"id":"https://openalex.org/W4412404234","doi":"https://doi.org/10.1109/tmi.2025.3588836","title":"Clinical Stage Prompt Induced Multi-Modal Prognosis","display_name":"Clinical Stage Prompt Induced Multi-Modal Prognosis","publication_year":2025,"publication_date":"2025-07-14","ids":{"openalex":"https://openalex.org/W4412404234","doi":"https://doi.org/10.1109/tmi.2025.3588836","pmid":"https://pubmed.ncbi.nlm.nih.gov/40658575"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2025.3588836","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2025.3588836","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101726115","display_name":"Ting Jin","orcid":"https://orcid.org/0009-0008-7546-2759"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ting Jin","raw_affiliation_strings":["Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003171599","display_name":"Xingran Xie","orcid":"https://orcid.org/0009-0009-1449-1852"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingran Xie","raw_affiliation_strings":["Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090964683","display_name":"Qingli Li","orcid":"https://orcid.org/0000-0001-5063-8801"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qingli Li","raw_affiliation_strings":["Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0001-5063-8801","affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071361935","display_name":"Xinxing Li","orcid":"https://orcid.org/0000-0002-9905-1910"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I4210160344","display_name":"Tongji Hospital","ror":"https://ror.org/04xy45965","country_code":"CN","type":"healthcare","lineage":["https://openalex.org/I4210160344"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinxing Li","raw_affiliation_strings":["Department of General Surgery, Tongji Hospital, Tongji University School of Medicine, Shanghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of General Surgery, Tongji Hospital, Tongji University School of Medicine, Shanghai, China","institution_ids":["https://openalex.org/I116953780","https://openalex.org/I4210160344"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101596247","display_name":"Yan Wang","orcid":"https://orcid.org/0000-0002-1592-9627"},"institutions":[{"id":"https://openalex.org/I66867065","display_name":"East China Normal University","ror":"https://ror.org/02n96ep67","country_code":"CN","type":"education","lineage":["https://openalex.org/I66867065"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yan Wang","raw_affiliation_strings":["Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China"],"raw_orcid":"https://orcid.org/0000-0002-1592-9627","affiliations":[{"raw_affiliation_string":"Shanghai Key Laboratory of Multidimensional Information Processing, East China Normal University, Shanghai, China","institution_ids":["https://openalex.org/I66867065"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5101726115"],"corresponding_institution_ids":["https://openalex.org/I66867065"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.23119222,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"44","issue":"12","first_page":"5065","last_page":"5076"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.3589000105857849,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.3589000105857849,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12574","display_name":"Clinical Reasoning and Diagnostic Skills","score":0.328000009059906,"subfield":{"id":"https://openalex.org/subfields/2714","display_name":"Family Practice"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10206","display_name":"Meta-analysis and systematic reviews","score":0.3100000023841858,"subfield":{"id":"https://openalex.org/subfields/1804","display_name":"Statistics, Probability and Uncertainty"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/stage","display_name":"Stage (stratigraphy)","score":0.7181811332702637},{"id":"https://openalex.org/keywords/modal","display_name":"Modal","score":0.5252918004989624},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4142433702945709},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.14431080222129822},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.13016149401664734}],"concepts":[{"id":"https://openalex.org/C146357865","wikidata":"https://www.wikidata.org/wiki/Q1123245","display_name":"Stage (stratigraphy)","level":2,"score":0.7181811332702637},{"id":"https://openalex.org/C71139939","wikidata":"https://www.wikidata.org/wiki/Q910194","display_name":"Modal","level":2,"score":0.5252918004989624},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4142433702945709},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.14431080222129822},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.13016149401664734},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C188027245","wikidata":"https://www.wikidata.org/wiki/Q750446","display_name":"Polymer chemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D009367","descriptor_name":"Neoplasm Staging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009367","descriptor_name":"Neoplasm Staging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009367","descriptor_name":"Neoplasm Staging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011379","descriptor_name":"Prognosis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064847","descriptor_name":"Multimodal Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064847","descriptor_name":"Multimodal Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D064847","descriptor_name":"Multimodal Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/tmi.2025.3588836","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2025.3588836","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:40658575","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40658575","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1361916995","display_name":null,"funder_award_id":"62101191","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1495272267","display_name":null,"funder_award_id":"62471182","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2368560517","display_name":null,"funder_award_id":"24QA2702100","funder_id":"https://openalex.org/F4320327803","funder_display_name":"Shanghai Rising-Star Program"},{"id":"https://openalex.org/G2973223028","display_name":null,"funder_award_id":"22DZ2229004","funder_id":"https://openalex.org/F4320321885","funder_display_name":"Science and Technology Commission of Shanghai Municipality"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321885","display_name":"Science and Technology Commission of Shanghai Municipality","ror":"https://ror.org/03kt66j61"},{"id":"https://openalex.org/F4320327803","display_name":"Shanghai Rising-Star Program","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W2214074259","https://openalex.org/W2888571505","https://openalex.org/W2948475969","https://openalex.org/W2954499361","https://openalex.org/W2971290066","https://openalex.org/W2996092187","https://openalex.org/W3011132328","https://openalex.org/W3041047318","https://openalex.org/W3134324269","https://openalex.org/W3135547872","https://openalex.org/W3137675974","https://openalex.org/W3173365702","https://openalex.org/W3176016422","https://openalex.org/W3192812059","https://openalex.org/W3198377975","https://openalex.org/W3203898052","https://openalex.org/W3204958849","https://openalex.org/W3215159356","https://openalex.org/W3216448540","https://openalex.org/W4200111739","https://openalex.org/W4223446508","https://openalex.org/W4225986494","https://openalex.org/W4226058394","https://openalex.org/W4280523186","https://openalex.org/W4283652726","https://openalex.org/W4284695981","https://openalex.org/W4288809219","https://openalex.org/W4291021272","https://openalex.org/W4296121254","https://openalex.org/W4296693015","https://openalex.org/W4312310776","https://openalex.org/W4313024246","https://openalex.org/W4313478927","https://openalex.org/W4319336599","https://openalex.org/W4323338544","https://openalex.org/W4360995290","https://openalex.org/W4376121873","https://openalex.org/W4379193912","https://openalex.org/W4385948838","https://openalex.org/W4386065569","https://openalex.org/W4387211734","https://openalex.org/W4390872175","https://openalex.org/W4390872859","https://openalex.org/W4390873714","https://openalex.org/W4390889814","https://openalex.org/W4392947521","https://openalex.org/W4392947532","https://openalex.org/W4401397240","https://openalex.org/W4402716294"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Histology":[0],"analysis":[1,18],"of":[2,60,62,69,78,86,102,134,178,190],"the":[3,14,36,45,67,76,84,87,100,132,135,148,188,204,211],"tumor":[4],"micro-environment":[5],"integrated":[6],"with":[7],"genomic":[8,179],"assays":[9],"is":[10,48],"widely":[11],"regarded":[12],"as":[13],"cornerstone":[15],"for":[16,214],"cancer":[17],"and":[19,27,32,58,65,72,92,146,207],"survival":[20,103],"prediction.":[21],"This":[22],"paper":[23],"jointly":[24],"incorporates":[25],"genomics":[26],"Whole":[28],"Slide":[29],"Images":[30],"(WSIs),":[31],"focuses":[33],"on":[34,183],"addressing":[35],"primary":[37],"challenges":[38],"involved":[39],"in":[40],"multi-modality":[41],"prognosis":[42,88],"analysis:":[43],"1)":[44],"high-order":[46],"relevance":[47],"difficult":[49],"to":[50,83,98,138,153,171,198],"be":[51,221],"modeled":[52],"from":[53,142,158],"dimensional":[54],"imbalanced":[55],"gigapixel":[56],"WSIs":[57],"tens":[59],"thousands":[61],"genetic":[63],"sequences,":[64],"2)":[66],"lack":[68],"medical":[70,216],"expertise":[71],"clinical":[73,93,144,150,205],"knowledge":[74,94],"hampers":[75],"effectiveness":[77],"prognosis-oriented":[79,117],"multi-modal":[80,200],"fusion.":[81],"Due":[82],"nature":[85],"task,":[89],"statistical":[90],"priors":[91],"are":[95],"essential":[96],"factors":[97],"provide":[99],"likelihood":[101],"over":[104],"time,":[105],"which,":[106],"however,":[107],"has":[108],"been":[109],"under-studied.":[110],"To":[111],"this":[112],"end,":[113],"we":[114,130,164],"propose":[115,165],"a":[116,166],"image-omics":[118],"fusion":[119],"framework,":[120],"dubbed":[121],"Clinical":[122],"Stage":[123],"Prompt":[124],"induced":[125],"Multimodal":[126],"Prognosis":[127],"(CiMP).":[128],"Concretely,":[129],"leverage":[131],"capabilities":[133],"advanced":[136],"LLM":[137],"generate":[139],"descriptions":[140],"derived":[141],"structured":[143,173],"records":[145],"utilize":[147],"generated":[149],"staging":[151],"prompts":[152],"inquire":[154],"critical":[155],"prognosis-related":[156],"information":[157],"each":[159],"modality":[160],"intentionally.":[161],"In":[162],"addition,":[163],"Group":[167],"Multi-Head":[168],"Self-Attention":[169],"module":[170],"capture":[172],"group-specific":[174],"features":[175],"within":[176],"cohorts":[177],"data.":[180],"Experimental":[181],"results":[182],"five":[184],"TCGA":[185],"datasets":[186],"show":[187],"superiority":[189],"our":[191],"proposed":[192],"method,":[193],"achieving":[194],"state-of-the-art":[195],"performance":[196],"compared":[197],"previous":[199],"prognostic":[201],"models.":[202],"Furthermore,":[203],"interpretability":[206],"discussion":[208],"also":[209],"highlight":[210],"immense":[212],"potential":[213],"further":[215],"applications.":[217],"Our":[218],"code":[219],"will":[220],"released":[222],"at":[223],"https://github.com/DeepMed-Lab-ECNU/CiMP/.":[224]},"counts_by_year":[],"updated_date":"2025-12-06T23:10:59.065948","created_date":"2025-10-10T00:00:00"}
