{"id":"https://openalex.org/W4392405541","doi":"https://doi.org/10.1109/tmi.2024.3372828","title":"Surgical Tattoos in Infrared: A Dataset for Quantifying Tissue Tracking and Mapping","display_name":"Surgical Tattoos in Infrared: A Dataset for Quantifying Tissue Tracking and Mapping","publication_year":2024,"publication_date":"2024-03-04","ids":{"openalex":"https://openalex.org/W4392405541","doi":"https://doi.org/10.1109/tmi.2024.3372828","pmid":"https://pubmed.ncbi.nlm.nih.gov/38437151"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2024.3372828","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2024.3372828","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082436527","display_name":"Adam Schmidt","orcid":"https://orcid.org/0000-0003-4769-4313"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Adam Schmidt","raw_affiliation_strings":["Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada","The Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada"],"raw_orcid":"https://orcid.org/0000-0003-4769-4313","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"The Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067122011","display_name":"Omid Mohareri","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161447","display_name":"Intuitive Surgical (United States)","ror":"https://ror.org/05g2n4m79","country_code":"US","type":"company","lineage":["https://openalex.org/I4210161447"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Omid Mohareri","raw_affiliation_strings":["Advanced Research, Intuitive Surgical, Sunnyvale, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Research, Intuitive Surgical, Sunnyvale, CA, USA","institution_ids":["https://openalex.org/I4210161447"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111801149","display_name":"Simon DiMaio","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161447","display_name":"Intuitive Surgical (United States)","ror":"https://ror.org/05g2n4m79","country_code":"US","type":"company","lineage":["https://openalex.org/I4210161447"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Simon P. DiMaio","raw_affiliation_strings":["Advanced Research, Intuitive Surgical, Sunnyvale, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Advanced Research, Intuitive Surgical, Sunnyvale, CA, USA","institution_ids":["https://openalex.org/I4210161447"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028375560","display_name":"Septimiu E. Salcudean","orcid":"https://orcid.org/0000-0001-8826-8025"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Septimiu E. Salcudean","raw_affiliation_strings":["Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada","The Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada"],"raw_orcid":"https://orcid.org/0000-0001-8826-8025","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]},{"raw_affiliation_string":"The Department of Electrical Engineering, The University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.2756,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.91579792,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"43","issue":"7","first_page":"2634","last_page":"2645"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10916","display_name":"Surgical Simulation and Training","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10916","display_name":"Surgical Simulation and Training","score":0.9739999771118164,"subfield":{"id":"https://openalex.org/subfields/2746","display_name":"Surgery"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10481","display_name":"Computer Graphics and Visualization Techniques","score":0.9559999704360962,"subfield":{"id":"https://openalex.org/subfields/1704","display_name":"Computer Graphics and Computer-Aided Design"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10719","display_name":"3D Shape Modeling and Analysis","score":0.9448999762535095,"subfield":{"id":"https://openalex.org/subfields/2206","display_name":"Computational Mechanics"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8114286661148071},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.7338365316390991},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6905702948570251},{"id":"https://openalex.org/keywords/indocyanine-green","display_name":"Indocyanine green","score":0.5411666035652161},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.4878826141357422},{"id":"https://openalex.org/keywords/retargeting","display_name":"Retargeting","score":0.4389096796512604},{"id":"https://openalex.org/keywords/surgery","display_name":"Surgery","score":0.10702580213546753},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.09594818949699402}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8114286661148071},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.7338365316390991},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6905702948570251},{"id":"https://openalex.org/C2781065829","wikidata":"https://www.wikidata.org/wiki/Q905662","display_name":"Indocyanine green","level":2,"score":0.5411666035652161},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.4878826141357422},{"id":"https://openalex.org/C2780575108","wikidata":"https://www.wikidata.org/wiki/Q7316652","display_name":"Retargeting","level":2,"score":0.4389096796512604},{"id":"https://openalex.org/C141071460","wikidata":"https://www.wikidata.org/wiki/Q40821","display_name":"Surgery","level":1,"score":0.10702580213546753},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.09594818949699402},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007208","descriptor_name":"Indocyanine Green","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007208","descriptor_name":"Indocyanine Green","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007208","descriptor_name":"Indocyanine Green","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007208","descriptor_name":"Indocyanine Green","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007208","descriptor_name":"Indocyanine Green","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007259","descriptor_name":"Infrared Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007259","descriptor_name":"Infrared Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007259","descriptor_name":"Infrared Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007259","descriptor_name":"Infrared Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007259","descriptor_name":"Infrared Rays","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013653","descriptor_name":"Tattooing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D013653","descriptor_name":"Tattooing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D013653","descriptor_name":"Tattooing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D013653","descriptor_name":"Tattooing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D013653","descriptor_name":"Tattooing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014741","descriptor_name":"Video Recording","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025321","descriptor_name":"Surgery, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025321","descriptor_name":"Surgery, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025321","descriptor_name":"Surgery, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025321","descriptor_name":"Surgery, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025321","descriptor_name":"Surgery, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tmi.2024.3372828","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2024.3372828","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:38437151","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38437151","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/5","score":0.5600000023841858,"display_name":"Gender equality"}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W1513100184","https://openalex.org/W1970305890","https://openalex.org/W1989675217","https://openalex.org/W2006776449","https://openalex.org/W2038325351","https://openalex.org/W2044465660","https://openalex.org/W2047607378","https://openalex.org/W2052982630","https://openalex.org/W2080778070","https://openalex.org/W2336187651","https://openalex.org/W2413983136","https://openalex.org/W2558899534","https://openalex.org/W2582073395","https://openalex.org/W2972836290","https://openalex.org/W2979494097","https://openalex.org/W2981630388","https://openalex.org/W3013840624","https://openalex.org/W3101167135","https://openalex.org/W3101577715","https://openalex.org/W3109908659","https://openalex.org/W3117055079","https://openalex.org/W3135183190","https://openalex.org/W3152803807","https://openalex.org/W3159643628","https://openalex.org/W3174718076","https://openalex.org/W3179159099","https://openalex.org/W3198930071","https://openalex.org/W3214532513","https://openalex.org/W4210453703","https://openalex.org/W4210582445","https://openalex.org/W4293094958","https://openalex.org/W4295938548","https://openalex.org/W4296053300","https://openalex.org/W4298129340","https://openalex.org/W4312326540","https://openalex.org/W4316128849","https://openalex.org/W4383108447","https://openalex.org/W4386527936","https://openalex.org/W4387225568","https://openalex.org/W4387521217","https://openalex.org/W4390871746","https://openalex.org/W4391756091","https://openalex.org/W4392349077","https://openalex.org/W4394625515","https://openalex.org/W6787724516","https://openalex.org/W6846523392","https://openalex.org/W6853486634"],"related_works":["https://openalex.org/W2058170566","https://openalex.org/W2755342338","https://openalex.org/W2772917594","https://openalex.org/W2775347418","https://openalex.org/W2166024367","https://openalex.org/W3116076068","https://openalex.org/W2229312674","https://openalex.org/W2951359407","https://openalex.org/W2079911747","https://openalex.org/W1969923398"],"abstract_inverted_index":{"Quantifying":[0],"performance":[1],"of":[2,20,112,148],"methods":[3,162],"for":[4,14],"tracking":[5,149,161],"and":[6,18,23,56,102,120,126,144,150,168,172],"mapping":[7,151],"tissue":[8,94],"in":[9,42,74,116,118,130],"endoscopic":[10],"environments":[11],"is":[12,90,176],"essential":[13],"enabling":[15],"image":[16],"guidance":[17],"automation":[19],"medical":[21],"interventions":[22],"surgery.":[24],"Datasets":[25],"developed":[26],"so":[27],"far":[28],"either":[29],"use":[30],"rigid":[31],"environments,":[32],"visible":[33,51,86,105],"markers,":[34],"or":[35,54],"require":[36],"annotators":[37],"to":[38,52,85,142],"label":[39],"salient":[40],"points":[41,95,128],"videos":[43],"after":[44],"collection.":[45],"These":[46],"are":[47,81],"respectively:":[48],"not":[49],"general,":[50],"algorithms,":[53],"costly":[55],"error-prone.":[57],"We":[58],"introduce":[59],"a":[60,66],"novel":[61],"labeling":[62],"methodology":[63],"along":[64],"with":[65,96,124],"dataset":[67],"that":[68,80],"uses":[69],"said":[70],"methodology,":[71],"Surgical":[72],"Tattoos":[73],"Infrared":[75],"(STIR).":[76],"STIR":[77,109,139,164,175],"has":[78],"labels":[79],"persistent":[82],"but":[83],"invisible":[84],"spectrum":[87],"algorithms.":[88],"This":[89],"done":[91],"by":[92],"labelling":[93],"IR-fluorescent":[97],"dye,":[98],"indocyanine":[99],"green":[100],"(ICG),":[101],"then":[103],"collecting":[104],"light":[106],"video":[107,114],"clips.":[108],"comprises":[110],"hundreds":[111],"stereo":[113],"clips":[115],"both":[117,166],"vivo":[119,122],"ex":[121],"scenes":[123],"start":[125],"end":[127],"labelled":[129,137],"the":[131],"IR":[132],"spectrum.":[133],"With":[134],"over":[135],"3,000":[136],"points,":[138],"will":[140],"help":[141],"quantify":[143],"enable":[145],"better":[146],"analysis":[147],"methods.":[152],"After":[153],"introducing":[154],"STIR,":[155],"we":[156],"analyze":[157],"multiple":[158],"different":[159],"frame-based":[160],"on":[163],"using":[165],"3D":[167],"2D":[169],"endpoint":[170],"error":[171],"accuracy":[173],"metrics.":[174],"available":[177],"at":[178],"https://dx.doi.org/10.21227/w8g4-g548.":[179]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
