{"id":"https://openalex.org/W3150581040","doi":"https://doi.org/10.1109/tmi.2021.3069558","title":"Evaluation of Deep Learning Architectures for Complex Immunofluorescence Nuclear Image Segmentation","display_name":"Evaluation of Deep Learning Architectures for Complex Immunofluorescence Nuclear Image Segmentation","publication_year":2021,"publication_date":"2021-03-30","ids":{"openalex":"https://openalex.org/W3150581040","doi":"https://doi.org/10.1109/tmi.2021.3069558","mag":"3150581040","pmid":"https://pubmed.ncbi.nlm.nih.gov/33784615"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2021.3069558","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tmi.2021.3069558","pdf_url":"https://ieeexplore.ieee.org/ielx7/42/9469008/09389742.pdf","source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://ieeexplore.ieee.org/ielx7/42/9469008/09389742.pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018240910","display_name":"Florian Kromp","orcid":"https://orcid.org/0000-0003-4557-5652"},"institutions":[{"id":"https://openalex.org/I4210123554","display_name":"St Anna Children's Hospital","ror":"https://ror.org/02qb3f692","country_code":"AT","type":"healthcare","lineage":["https://openalex.org/I4210123554"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Florian Kromp","raw_affiliation_strings":["Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0003-4557-5652","affiliations":[{"raw_affiliation_string":"Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]},{"raw_affiliation_string":"Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009274955","display_name":"Lukas Fischer","orcid":"https://orcid.org/0000-0001-5303-6638"},"institutions":[{"id":"https://openalex.org/I4210126338","display_name":"Software Competence Center Hagenberg (Austria)","ror":"https://ror.org/02ks3nr96","country_code":"AT","type":"company","lineage":["https://openalex.org/I4210126338"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Lukas Fischer","raw_affiliation_strings":["Software Competence Center Hagenberg GmbH (SCCH), Hagenberg, Austria"],"raw_orcid":"https://orcid.org/0000-0001-5303-6638","affiliations":[{"raw_affiliation_string":"Software Competence Center Hagenberg GmbH (SCCH), Hagenberg, Austria","institution_ids":["https://openalex.org/I4210126338"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042265811","display_name":"Eva Bozsaky","orcid":"https://orcid.org/0000-0001-6208-368X"},"institutions":[{"id":"https://openalex.org/I4210123554","display_name":"St Anna Children's Hospital","ror":"https://ror.org/02qb3f692","country_code":"AT","type":"healthcare","lineage":["https://openalex.org/I4210123554"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Eva Bozsaky","raw_affiliation_strings":["Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]},{"raw_affiliation_string":"Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113548012","display_name":"Inge M. Ambros","orcid":null},"institutions":[{"id":"https://openalex.org/I4210123554","display_name":"St Anna Children's Hospital","ror":"https://ror.org/02qb3f692","country_code":"AT","type":"healthcare","lineage":["https://openalex.org/I4210123554"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Inge M. Ambros","raw_affiliation_strings":["Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]},{"raw_affiliation_string":"Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111465926","display_name":"Wolfgang D\u00f6rr","orcid":null},"institutions":[{"id":"https://openalex.org/I76134821","display_name":"Medical University of Vienna","ror":"https://ror.org/05n3x4p02","country_code":"AT","type":"education","lineage":["https://openalex.org/I76134821"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Wolfgang Dorr","raw_affiliation_strings":["ATRAB-Applied and Translational Radiobiology, Medical University of Vienna, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ATRAB-Applied and Translational Radiobiology, Medical University of Vienna, Vienna, Austria","institution_ids":["https://openalex.org/I76134821"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076275499","display_name":"Klaus Beiske","orcid":"https://orcid.org/0000-0002-7772-7748"},"institutions":[{"id":"https://openalex.org/I1281400175","display_name":"Oslo University Hospital","ror":"https://ror.org/00j9c2840","country_code":"NO","type":"healthcare","lineage":["https://openalex.org/I1281400175"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Klaus Beiske","raw_affiliation_strings":["Oslo University Hospital, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oslo University Hospital, Norway","institution_ids":["https://openalex.org/I1281400175"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072620565","display_name":"Peter F. Ambros","orcid":"https://orcid.org/0000-0002-5507-7211"},"institutions":[{"id":"https://openalex.org/I4210123554","display_name":"St Anna Children's Hospital","ror":"https://ror.org/02qb3f692","country_code":"AT","type":"healthcare","lineage":["https://openalex.org/I4210123554"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Peter F. Ambros","raw_affiliation_strings":["Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]},{"raw_affiliation_string":"Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020665735","display_name":"Allan Hanbury","orcid":"https://orcid.org/0000-0002-7149-5843"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]},{"id":"https://openalex.org/I4210112164","display_name":"Complexity Science Hub","ror":"https://ror.org/023dz9m50","country_code":"AT","type":"nonprofit","lineage":["https://openalex.org/I4210112164"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Allan Hanbury","raw_affiliation_strings":["Complexity Science Hub, Vienna, Austria","TU Wien Informatics, Institute of Information Systems Engineering, Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0002-7149-5843","affiliations":[{"raw_affiliation_string":"Complexity Science Hub, Vienna, Austria","institution_ids":["https://openalex.org/I4210112164"]},{"raw_affiliation_string":"TU Wien Informatics, Institute of Information Systems Engineering, Vienna, Austria","institution_ids":["https://openalex.org/I145847075"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070668757","display_name":"Sabine Taschner\u2010Mandl","orcid":"https://orcid.org/0000-0002-1439-5301"},"institutions":[{"id":"https://openalex.org/I4210123554","display_name":"St Anna Children's Hospital","ror":"https://ror.org/02qb3f692","country_code":"AT","type":"healthcare","lineage":["https://openalex.org/I4210123554"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Sabine Taschner-Mandl","raw_affiliation_strings":["Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria"],"raw_orcid":"https://orcid.org/0000-0002-1439-5301","affiliations":[{"raw_affiliation_string":"Tumor Biology Group, Children\u2019s Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]},{"raw_affiliation_string":"Tumor Biology Group, Children's Cancer Research Institute, Vienna, Austria","institution_ids":["https://openalex.org/I4210123554"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":14.4754,"has_fulltext":true,"cited_by_count":79,"citation_normalized_percentile":{"value":0.98977154,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"40","issue":"7","first_page":"1934","last_page":"1949"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9980000257492065,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10522","display_name":"Medical Imaging Techniques and Applications","score":0.9911999702453613,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6353759765625},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.5803928971290588},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5429750084877014},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5175085067749023},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.5025434494018555},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.49915623664855957},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.47133469581604004},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3995654284954071}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6353759765625},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.5803928971290588},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5429750084877014},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5175085067749023},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.5025434494018555},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.49915623664855957},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.47133469581604004},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3995654284954071}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005455","descriptor_name":"Fluorescent Antibody Technique","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005455","descriptor_name":"Fluorescent Antibody Technique","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005455","descriptor_name":"Fluorescent Antibody Technique","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005455","descriptor_name":"Fluorescent Antibody Technique","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tmi.2021.3069558","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tmi.2021.3069558","pdf_url":"https://ieeexplore.ieee.org/ielx7/42/9469008/09389742.pdf","source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:33784615","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33784615","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null}],"best_oa_location":{"id":"doi:10.1109/tmi.2021.3069558","is_oa":true,"landing_page_url":"https://doi.org/10.1109/tmi.2021.3069558","pdf_url":"https://ieeexplore.ieee.org/ielx7/42/9469008/09389742.pdf","source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4399999976158142,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G3049740244","display_name":null,"funder_award_id":"844198","funder_id":"https://openalex.org/F4320323031","funder_display_name":"\u00d6sterreichische Forschungsf\u00f6rderungsgesellschaft"},{"id":"https://openalex.org/G5871050094","display_name":"LIQUIDHOPE Advancing Liquid Biopsies for Neuroblastoma","funder_award_id":"I4162","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G6930293849","display_name":null,"funder_award_id":"861750","funder_id":"https://openalex.org/F4320323031","funder_display_name":"\u00d6sterreichische Forschungsf\u00f6rderungsgesellschaft"},{"id":"https://openalex.org/G8944057677","display_name":null,"funder_award_id":"14162","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"}],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"},{"id":"https://openalex.org/F4320323031","display_name":"\u00d6sterreichische Forschungsf\u00f6rderungsgesellschaft","ror":"https://ror.org/028jc0449"},{"id":"https://openalex.org/F4320327593","display_name":"Bundesministerium f\u00fcr Digitalisierung und Wirtschaftsstandort","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3150581040.pdf","grobid_xml":"https://content.openalex.org/works/W3150581040.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W639708223","https://openalex.org/W1686810756","https://openalex.org/W1901129140","https://openalex.org/W1993846072","https://openalex.org/W2063781919","https://openalex.org/W2082526668","https://openalex.org/W2103054900","https://openalex.org/W2103243046","https://openalex.org/W2103328396","https://openalex.org/W2117108042","https://openalex.org/W2137820961","https://openalex.org/W2151967815","https://openalex.org/W2155822542","https://openalex.org/W2163605009","https://openalex.org/W2194775991","https://openalex.org/W2289218532","https://openalex.org/W2344654247","https://openalex.org/W2428632126","https://openalex.org/W2548342201","https://openalex.org/W2592905743","https://openalex.org/W2711672883","https://openalex.org/W2744103196","https://openalex.org/W2775584822","https://openalex.org/W2782436336","https://openalex.org/W2790432037","https://openalex.org/W2885343725","https://openalex.org/W2895303488","https://openalex.org/W2900936384","https://openalex.org/W2905338897","https://openalex.org/W2914272101","https://openalex.org/W2914298543","https://openalex.org/W2922204263","https://openalex.org/W2952610664","https://openalex.org/W2956013636","https://openalex.org/W2961912654","https://openalex.org/W2962804068","https://openalex.org/W2962835968","https://openalex.org/W2963073614","https://openalex.org/W2963150697","https://openalex.org/W2964003427","https://openalex.org/W2964144363","https://openalex.org/W2980046504","https://openalex.org/W2980112230","https://openalex.org/W2980998394","https://openalex.org/W2991915699","https://openalex.org/W3012478585","https://openalex.org/W3022215132","https://openalex.org/W3046446892","https://openalex.org/W3048399453","https://openalex.org/W3084995528","https://openalex.org/W3098917838","https://openalex.org/W3111521801","https://openalex.org/W4292402161","https://openalex.org/W4308831279","https://openalex.org/W6637373629","https://openalex.org/W6639824700","https://openalex.org/W6684191040","https://openalex.org/W6729966448","https://openalex.org/W6747062647","https://openalex.org/W6756444276","https://openalex.org/W6781908259"],"related_works":["https://openalex.org/W4375867731","https://openalex.org/W2611989081","https://openalex.org/W2731899572","https://openalex.org/W4230611425","https://openalex.org/W4294635752","https://openalex.org/W4304166257","https://openalex.org/W4383066092","https://openalex.org/W3215138031","https://openalex.org/W4379231730","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Separating":[0],"and":[1,62,66,73,92,113,133,139,168],"labeling":[2],"each":[3],"nuclear":[4,13,25,57,106,248],"instance":[5,90],"(instance-aware":[6],"segmentation)":[7,91],"is":[8],"the":[9,75,124,136,151,195,207,214],"key":[10],"challenge":[11],"in":[12,145],"image":[14,26,58],"segmentation.":[15],"Deep":[16,45],"Convolutional":[17],"Neural":[18],"Networks":[19],"have":[20],"been":[21,43],"demonstrated":[22],"to":[23,118,122,176,206,243],"solve":[24],"segmentation":[27,48,76,131,241],"tasks":[28],"across":[29],"different":[30],"imaging":[31,224],"modalities,":[32],"but":[33,54],"a":[34,115],"systematic":[35],"comparison":[36],"on":[37,103,142,191,200,219],"complex":[38,104,143,172,201,220,246],"immunofluorescence":[39],"images":[40,107,121,144,165,193,202,210,221,232],"has":[41],"not":[42],"performed.":[44],"learning":[46,81],"based":[47,98],"requires":[49],"annotated":[50,55,233],"datasets":[51,59],"for":[52,171,180,238],"training,":[53],"fluorescence":[56,105,247],"are":[60,236],"rare":[61],"of":[63,78,108,147,183,203,222],"limited":[64],"size":[65],"complexity.":[67],"In":[68],"this":[69],"work,":[70],"we":[71],"evaluate":[72,114],"compare":[74],"effectiveness":[77],"multiple":[79],"deep":[80],"architectures":[82,132,138,153,242],"(U-Net,":[83],"U-Net":[84,137,152],"ResNet,":[85],"Cellpose,":[86],"Mask":[87,188],"R-CNN,":[88],"KG":[89],"two":[93],"conventional":[94,140],"algorithms":[95],"(Iterative":[96],"h-min":[97],"watershed,":[99],"Attributed":[100],"relational":[101],"graphs)":[102],"various":[109],"types.":[110,187],"We":[111,226],"propose":[112],"novel":[116],"strategy":[117],"create":[119],"artificial":[120,192],"extend":[123],"training":[125,208,239],"set.":[126],"Results":[127],"show":[128],"that":[129,231],"instance-aware":[130,240],"Cellpose":[134,212],"outperform":[135],"methods":[141],"terms":[146],"F1":[148,169,178,198,217],"scores,":[149],"while":[150,211],"achieve":[154],"overall":[155,196,215],"higher":[156],"mean":[157],"Dice":[158],"scores.":[159],"Training":[160],"with":[161],"additional":[162],"artificially":[163],"generated":[164],"improves":[166],"recall":[167],"scores":[170,179],"images,":[173],"thereby":[174],"leading":[175],"top":[177],"three":[181],"out":[182],"five":[184],"sample":[185],"preparation":[186],"R-CNN":[189],"trained":[190],"achieves":[194,213],"highest":[197,216],"score":[199,218],"similar":[204],"conditions":[205],"set":[209],"new":[223],"conditions.":[225],"provide":[227],"quantitative":[228],"results":[229],"demonstrating":[230],"by":[234],"under-graduates":[235],"sufficient":[237],"efficiently":[244],"segment":[245],"images.":[249]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":18},{"year":2023,"cited_by_count":19},{"year":2022,"cited_by_count":19},{"year":2021,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
