{"id":"https://openalex.org/W2997898326","doi":"https://doi.org/10.1109/tmi.2020.2964499","title":"Explainable Anatomical Shape Analysis Through Deep Hierarchical Generative Models","display_name":"Explainable Anatomical Shape Analysis Through Deep Hierarchical Generative Models","publication_year":2020,"publication_date":"2020-01-06","ids":{"openalex":"https://openalex.org/W2997898326","doi":"https://doi.org/10.1109/tmi.2020.2964499","mag":"2997898326","pmid":"https://pubmed.ncbi.nlm.nih.gov/31944949"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2020.2964499","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2020.2964499","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"preprint","indexed_in":["arxiv","crossref","datacite","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1907.00058","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016254297","display_name":"Carlo Biffi","orcid":"https://orcid.org/0000-0002-4913-7441"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Carlo Biffi","raw_affiliation_strings":["Imperial College London, London, U.K","Imperial College London"],"raw_orcid":"https://orcid.org/0000-0002-4913-7441","affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Imperial College London","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051073355","display_name":"Juan J. Cerrolaza","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Juan J. Cerrolaza","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077334337","display_name":"Giacomo Tarroni","orcid":"https://orcid.org/0000-0002-0341-6138"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Giacomo Tarroni","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059823739","display_name":"Wenjia Bai","orcid":"https://orcid.org/0000-0003-2943-7698"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Wenjia Bai","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":"https://orcid.org/0000-0003-2943-7698","affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071762687","display_name":"Antonio de Marvao","orcid":"https://orcid.org/0000-0001-9095-5887"},"institutions":[{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Antonio de Marvao","raw_affiliation_strings":["Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K","[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]"],"raw_orcid":"https://orcid.org/0000-0001-9095-5887","affiliations":[{"raw_affiliation_string":"Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K","institution_ids":["https://openalex.org/I4210161592"]},{"raw_affiliation_string":"[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038400548","display_name":"Ozan Oktay","orcid":"https://orcid.org/0000-0003-2976-0874"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ozan Oktay","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":"https://orcid.org/0000-0003-2976-0874","affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016912926","display_name":"Christian Ledig","orcid":"https://orcid.org/0000-0003-4862-3138"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Christian Ledig","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063499796","display_name":"Lo\u00efc Le Folgoc","orcid":"https://orcid.org/0000-0002-5156-6616"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Loic Le Folgoc","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001104721","display_name":"Konstantinos Kamnitsas","orcid":"https://orcid.org/0000-0003-3281-6509"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Konstantinos Kamnitsas","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":"https://orcid.org/0000-0003-3281-6509","affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079405870","display_name":"Georgia Doumou","orcid":null},"institutions":[{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Georgia Doumou","raw_affiliation_strings":["Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K","[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K","institution_ids":["https://openalex.org/I4210161592"]},{"raw_affiliation_string":"[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078754523","display_name":"Jinming Duan","orcid":"https://orcid.org/0000-0002-5108-2128"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jinming Duan","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064634320","display_name":"Sanjay Prasad","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sanjay K. Prasad","raw_affiliation_strings":["Imperial College London, National Heart and Lung Institute, London, U.K","Imperial College London National Heart and Lung Institute London U.K"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Imperial College London, National Heart and Lung Institute, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Imperial College London National Heart and Lung Institute London U.K","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071216592","display_name":"Stuart A. Cook","orcid":"https://orcid.org/0000-0001-6628-194X"},"institutions":[{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stuart A. Cook","raw_affiliation_strings":["Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K","[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K","institution_ids":["https://openalex.org/I4210161592"]},{"raw_affiliation_string":"[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068696789","display_name":"Declan P. O\u2019Regan","orcid":"https://orcid.org/0000-0002-0691-0270"},"institutions":[{"id":"https://openalex.org/I4210161592","display_name":"MRC London Institute of Medical Sciences","ror":"https://ror.org/05p1n6x86","country_code":"GB","type":"facility","lineage":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]},{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Declan P. O'Regan","raw_affiliation_strings":["[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]"],"raw_orcid":"https://orcid.org/0000-0002-0691-0270","affiliations":[{"raw_affiliation_string":"[Faculty of Medicine, MRC London Institute of Medical Sciences, Imperial College London, London, U.K.]","institution_ids":["https://openalex.org/I4210161592","https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006461848","display_name":"Daniel Rueckert","orcid":"https://orcid.org/0000-0002-5683-5889"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Daniel Rueckert","raw_affiliation_strings":["Imperial College London, London, U.K","Department of Computing, Imperial College London, London, U.K.#TAB#"],"raw_orcid":"https://orcid.org/0000-0002-5683-5889","affiliations":[{"raw_affiliation_string":"Imperial College London, London, U.K","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Department of Computing, Imperial College London, London, U.K.#TAB#","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.4062,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.68029543,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"39","issue":"6","first_page":"2088","last_page":"2099"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9969000220298767,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9934999942779541,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9871000051498413,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.7865581512451172},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7383654117584229},{"id":"https://openalex.org/keywords/discriminative-model","display_name":"Discriminative model","score":0.7143179178237915},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6366705894470215},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.520539402961731},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.5113875269889832},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.5106499791145325},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.48790523409843445},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.48437365889549255},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.45830678939819336},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.44357287883758545},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.4197659492492676},{"id":"https://openalex.org/keywords/shape-analysis","display_name":"Shape analysis (program analysis)","score":0.41010597348213196}],"concepts":[{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.7865581512451172},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7383654117584229},{"id":"https://openalex.org/C97931131","wikidata":"https://www.wikidata.org/wiki/Q5282087","display_name":"Discriminative model","level":2,"score":0.7143179178237915},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6366705894470215},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.520539402961731},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.5113875269889832},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.5106499791145325},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.48790523409843445},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.48437365889549255},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.45830678939819336},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.44357287883758545},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.4197659492492676},{"id":"https://openalex.org/C112604564","wikidata":"https://www.wikidata.org/wiki/Q7489226","display_name":"Shape analysis (program analysis)","level":3,"score":0.41010597348213196},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0},{"id":"https://openalex.org/C97686452","wikidata":"https://www.wikidata.org/wiki/Q7604153","display_name":"Static analysis","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D000544","descriptor_name":"Alzheimer Disease","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006624","descriptor_name":"Hippocampus","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":10,"locations":[{"id":"doi:10.1109/tmi.2020.2964499","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2020.2964499","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:31944949","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31944949","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null},{"id":"pmh:oai:arXiv.org:1907.00058","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1907.00058","pdf_url":"https://arxiv.org/pdf/1907.00058","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:openaccess.city.ac.uk:23500","is_oa":true,"landing_page_url":"https://openaccess.city.ac.uk/view/creators_id/giacomo=2Etarroni.html>","pdf_url":"https://openaccess.city.ac.uk/id/eprint/23500/1/1907.00058v2.pdf","source":{"id":"https://openalex.org/S4306401940","display_name":"City Research Online (City University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I180825142","host_organization_name":"City, University of London","host_organization_lineage":["https://openalex.org/I180825142"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"PeerReviewed"},{"id":"pmh:oai:pubmedcentral.nih.gov:7269693","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7269693","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Med Imaging","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/2c154fea-1765-45fa-b5d1-da92a059874c","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/2c154fea-1765-45fa-b5d1-da92a059874c","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Biffi, C, Cerrolaza, J J, Tarroni, G, Bai, W, de Marvao, A, Oktay, O, Ledig, C, Le Folgoc, L, Kamnitsas, K, Doumou, G, Duan, J, Prasad, S K, Cook, S A, O'Regan, D P & Rueckert, D 2020, 'Explainable anatomical shape analysis through deep hierarchical generative models', IEEE Transactions on Medical Imaging, vol. 39, no. 6, pp. 2088-2099. https://doi.org/10.1109/TMI.2020.2964499","raw_type":"article"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/76573","is_oa":false,"landing_page_url":"http://hdl.handle.net/10044/1/76573","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"2099","raw_type":"Journal Article"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/77445","is_oa":false,"landing_page_url":"http://hdl.handle.net/10044/1/77445","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Working Paper"},{"id":"doi:10.48550/arxiv.1907.00058","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.1907.00058","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article"},{"id":"mag:2997898326","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1907.00058","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1907.00058","pdf_url":"https://arxiv.org/pdf/1907.00058","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","score":0.699999988079071,"display_name":"Reduced inequalities"}],"awards":[{"id":"https://openalex.org/G5972579360","display_name":null,"funder_award_id":"SGL015/1006","funder_id":"https://openalex.org/F4320320241","funder_display_name":"Academy of Medical Sciences"},{"id":"https://openalex.org/G6541509879","display_name":null,"funder_award_id":"NH/17/1/32725","funder_id":"https://openalex.org/F4320319992","funder_display_name":"British Heart Foundation"},{"id":"https://openalex.org/G6550315070","display_name":null,"funder_award_id":"RE/13/4/30184","funder_id":"https://openalex.org/F4320319992","funder_display_name":"British Heart Foundation"}],"funders":[{"id":"https://openalex.org/F4320315071","display_name":"NIHR Biomedical Research Centre, Royal Marsden NHS Foundation Trust/Institute of Cancer Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319990","display_name":"National Institute for Health and Care Research","ror":"https://ror.org/0187kwz08"},{"id":"https://openalex.org/F4320319992","display_name":"British Heart Foundation","ror":"https://ror.org/02wdwnk04"},{"id":"https://openalex.org/F4320320241","display_name":"Academy of Medical Sciences","ror":"https://ror.org/00c489v88"},{"id":"https://openalex.org/F4320320283","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10"},{"id":"https://openalex.org/F4320320284","display_name":"Imperial College Healthcare NHS Trust","ror":"https://ror.org/056ffv270"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":51,"referenced_works":["https://openalex.org/W1500072073","https://openalex.org/W1872336954","https://openalex.org/W1909320841","https://openalex.org/W1955462214","https://openalex.org/W1982874606","https://openalex.org/W2047658479","https://openalex.org/W2052780003","https://openalex.org/W2090537659","https://openalex.org/W2097618980","https://openalex.org/W2109907633","https://openalex.org/W2112643871","https://openalex.org/W2113576511","https://openalex.org/W2114855512","https://openalex.org/W2119340816","https://openalex.org/W2155513557","https://openalex.org/W2155883645","https://openalex.org/W2166406463","https://openalex.org/W2187089797","https://openalex.org/W2467604901","https://openalex.org/W2470928194","https://openalex.org/W2549857822","https://openalex.org/W2560108548","https://openalex.org/W2584136073","https://openalex.org/W2587977587","https://openalex.org/W2592929672","https://openalex.org/W2620296437","https://openalex.org/W2728326942","https://openalex.org/W2785239769","https://openalex.org/W2803176574","https://openalex.org/W2804047627","https://openalex.org/W2884156795","https://openalex.org/W2885878352","https://openalex.org/W2886612741","https://openalex.org/W2889648615","https://openalex.org/W2894845372","https://openalex.org/W2900351888","https://openalex.org/W2904555209","https://openalex.org/W2905035821","https://openalex.org/W2937704642","https://openalex.org/W2944730029","https://openalex.org/W2945390471","https://openalex.org/W2951004968","https://openalex.org/W2962928839","https://openalex.org/W2962947707","https://openalex.org/W2963135265","https://openalex.org/W3105445034","https://openalex.org/W4211082352","https://openalex.org/W6639732818","https://openalex.org/W6640963894","https://openalex.org/W6720208624","https://openalex.org/W6747900281"],"related_works":["https://openalex.org/W3000334815","https://openalex.org/W2886612741","https://openalex.org/W2949476443","https://openalex.org/W3103712661","https://openalex.org/W2803144007","https://openalex.org/W3090756528","https://openalex.org/W3029232773","https://openalex.org/W3100175091","https://openalex.org/W1513086313","https://openalex.org/W3213302606","https://openalex.org/W3084354541","https://openalex.org/W3155555028","https://openalex.org/W3164451689","https://openalex.org/W2953746418","https://openalex.org/W1968426488","https://openalex.org/W3092864056","https://openalex.org/W3004572460","https://openalex.org/W3111325699","https://openalex.org/W2765366332","https://openalex.org/W3196675316"],"abstract_inverted_index":{"Quantification":[0],"of":[1,22,35,49,88,94,102,121,147,163,211,237,245],"anatomical":[2,24,89,127,216],"shape":[3,75],"changes":[4],"currently":[5],"relies":[6],"on":[7,171,188,200],"scalar":[8],"global":[9,213],"indexes":[10],"which":[11,218],"are":[12],"largely":[13],"insensitive":[14],"to":[15,84,112,143,231],"regional":[16,215],"or":[17],"asymmetric":[18],"modifications.":[19],"Accurate":[20],"assessment":[21],"pathology-driven":[23],"remodeling":[25],"is":[26,109],"a":[27,68,86,92,105],"crucial":[28],"step":[29],"for":[30,74],"the":[31,47,57,99,118,122,126,139,144,148,151,161,207,222],"diagnosis":[32],"and":[33,60,165,187,193,214,240],"treatment":[34],"many":[36],"conditions.":[37],"Deep":[38],"learning":[39,72],"approaches":[40],"have":[41],"recently":[42],"achieved":[43],"wide":[44],"success":[45],"in":[46,56,138,160,182,209,242],"analysis":[48,236],"medical":[50],"images,":[51],"but":[52],"they":[53],"lack":[54],"interpretability":[55],"feature":[58],"extraction":[59],"decision":[61],"processes.":[62],"In":[63,77],"this":[64,103,131],"work,":[65],"we":[66,79],"propose":[67],"new":[69],"interpretable":[70],"deep":[71,81],"model":[73,85],"analysis.":[76],"particular,":[78],"exploit":[80],"generative":[82,145],"networks":[83],"population":[87],"segmentations":[90,173],"through":[91],"hierarchy":[93],"conditional":[95],"latent":[96,107,133],"variables.":[97],"At":[98],"highest":[100],"level":[101],"hierarchy,":[104],"two-dimensional":[106],"space":[108,134,141],"simultaneously":[110],"optimised":[111],"discriminate":[113,220],"distinct":[114],"clinical":[115],"conditions,":[116],"enabling":[117],"direct":[119],"visualisation":[120,208],"classification":[123,152],"space.":[124],"Moreover,":[125],"variability":[128],"encoded":[129],"by":[130],"discriminative":[132],"can":[135],"be":[136],"visualised":[137],"segmentation":[140],"thanks":[142],"properties":[146],"model,":[149],"making":[150],"task":[153],"transparent.":[154],"This":[155],"approach":[156,228],"yielded":[157],"high":[158],"accuracy":[159],"categorisation":[162],"healthy":[164,191],"remodelled":[166],"left":[167],"ventricles":[168],"when":[169,198],"tested":[170,199],"unseen":[172],"from":[174,190],"our":[175],"own":[176],"multi-centre":[177],"dataset":[178],"as":[179,181],"well":[180],"an":[183],"external":[184],"validation":[185],"set,":[186],"hippocampi":[189],"controls":[192],"patients":[194],"with":[195],"Alzheimer's":[196],"disease":[197],"ADNI":[201],"data.":[202],"More":[203],"importantly,":[204],"it":[205],"enabled":[206],"three-dimensions":[210],"both":[212],"features":[217],"better":[219],"between":[221],"conditions":[223],"under":[224],"exam.":[225],"The":[226],"proposed":[227],"scales":[229],"effectively":[230],"large":[232],"populations,":[233],"facilitating":[234],"high-throughput":[235],"normal":[238],"anatomy":[239],"pathology":[241],"large-scale":[243],"studies":[244],"volumetric":[246],"imaging.":[247]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2019,"cited_by_count":1}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
