{"id":"https://openalex.org/W2883092763","doi":"https://doi.org/10.1109/tmi.2018.2855736","title":"PAT\u2014Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3-D Micrographs","display_name":"PAT\u2014Probabilistic Axon Tracking for Densely Labeled Neurons in Large 3-D Micrographs","publication_year":2018,"publication_date":"2018-07-13","ids":{"openalex":"https://openalex.org/W2883092763","doi":"https://doi.org/10.1109/tmi.2018.2855736","mag":"2883092763","pmid":"https://pubmed.ncbi.nlm.nih.gov/30010551"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2018.2855736","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2018.2855736","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015657326","display_name":"Henrik Skibbe","orcid":"https://orcid.org/0000-0002-2857-6023"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Henrik Skibbe","raw_affiliation_strings":["Kyoto University, Kyoto, Japan","Kyoto University,Kyoto,Japan"],"raw_orcid":"https://orcid.org/0000-0002-2857-6023","affiliations":[{"raw_affiliation_string":"Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Kyoto University,Kyoto,Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064325044","display_name":"Marco Reisert","orcid":"https://orcid.org/0000-0003-2742-1940"},"institutions":[{"id":"https://openalex.org/I2801240073","display_name":"University Medical Center Freiburg","ror":"https://ror.org/03vzbgh69","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2801240073"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marco Reisert","raw_affiliation_strings":["University Medical Center of Freiburg, Freiburg im Breisgau, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University Medical Center of Freiburg, Freiburg im Breisgau, Germany","institution_ids":["https://openalex.org/I2801240073"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083725267","display_name":"Ken Nakae","orcid":"https://orcid.org/0000-0003-4183-1532"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Ken Nakae","raw_affiliation_strings":["Kyoto University, Kyoto, Japan","Kyoto University,Kyoto,Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Kyoto University,Kyoto,Japan","institution_ids":["https://openalex.org/I22299242"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040964586","display_name":"Akiya Watakabe","orcid":"https://orcid.org/0000-0002-8382-3840"},"institutions":[{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akiya Watakabe","raw_affiliation_strings":["RIKEN Brain Science Institute, Wako, Japan","RIKEN Brain Science Institute (Wako, Japan)"],"raw_orcid":"https://orcid.org/0000-0002-8382-3840","affiliations":[{"raw_affiliation_string":"RIKEN Brain Science Institute, Wako, Japan","institution_ids":["https://openalex.org/I2800939219"]},{"raw_affiliation_string":"RIKEN Brain Science Institute (Wako, Japan)","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072022442","display_name":"Junichi Hata","orcid":"https://orcid.org/0000-0001-5833-444X"},"institutions":[{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Junichi Hata","raw_affiliation_strings":["RIKEN Brain Science Institute, Wako, Japan","RIKEN Brain Science Institute (Wako, Japan)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Brain Science Institute, Wako, Japan","institution_ids":["https://openalex.org/I2800939219"]},{"raw_affiliation_string":"RIKEN Brain Science Institute (Wako, Japan)","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017834677","display_name":"Hiroaki Mizukami","orcid":"https://orcid.org/0000-0001-8954-874X"},"institutions":[{"id":"https://openalex.org/I146500386","display_name":"Jichi Medical University","ror":"https://ror.org/010hz0g26","country_code":"JP","type":"education","lineage":["https://openalex.org/I146500386"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroaki Mizukami","raw_affiliation_strings":["Jichi Medical University, Shimotsuke, Japan","Jichi Medical University, Shimotsuke, Japan,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Jichi Medical University, Shimotsuke, Japan","institution_ids":["https://openalex.org/I146500386"]},{"raw_affiliation_string":"Jichi Medical University, Shimotsuke, Japan,","institution_ids":["https://openalex.org/I146500386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035479034","display_name":"Hideyuki Okano","orcid":"https://orcid.org/0000-0001-7482-5935"},"institutions":[{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hideyuki Okano","raw_affiliation_strings":["RIKEN Brain Science Institute, Wako, Japan","RIKEN Brain Science Institute (Wako, Japan)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Brain Science Institute, Wako, Japan","institution_ids":["https://openalex.org/I2800939219"]},{"raw_affiliation_string":"RIKEN Brain Science Institute (Wako, Japan)","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086200068","display_name":"Tetsuo Yamamori","orcid":"https://orcid.org/0000-0001-5016-0078"},"institutions":[{"id":"https://openalex.org/I2800939219","display_name":"RIKEN Center for Brain Science","ror":"https://ror.org/04j1n1c04","country_code":"JP","type":"facility","lineage":["https://openalex.org/I2800939219","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Tetsuo Yamamori","raw_affiliation_strings":["RIKEN Brain Science Institute, Wako, Japan","RIKEN Brain Science Institute (Wako, Japan)"],"raw_orcid":"https://orcid.org/0000-0001-5016-0078","affiliations":[{"raw_affiliation_string":"RIKEN Brain Science Institute, Wako, Japan","institution_ids":["https://openalex.org/I2800939219"]},{"raw_affiliation_string":"RIKEN Brain Science Institute (Wako, Japan)","institution_ids":["https://openalex.org/I2800939219"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072540019","display_name":"Shin Ishii","orcid":"https://orcid.org/0000-0001-9385-8230"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Shin Ishii","raw_affiliation_strings":["Kyoto University, Kyoto, Japan","Kyoto University,Kyoto,Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kyoto University, Kyoto, Japan","institution_ids":["https://openalex.org/I22299242"]},{"raw_affiliation_string":"Kyoto University,Kyoto,Japan","institution_ids":["https://openalex.org/I22299242"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5015657326"],"corresponding_institution_ids":["https://openalex.org/I22299242"],"apc_list":null,"apc_paid":null,"fwci":2.3221,"has_fulltext":false,"cited_by_count":18,"citation_normalized_percentile":{"value":0.89578991,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":98},"biblio":{"volume":"38","issue":"1","first_page":"69","last_page":"78"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9972000122070312,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6604341864585876},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6407265067100525},{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.576624870300293},{"id":"https://openalex.org/keywords/connectomics","display_name":"Connectomics","score":0.5759120583534241},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.534641444683075},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5178268551826477},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5171772837638855},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.4574810862541199},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3987720012664795},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.1324266791343689},{"id":"https://openalex.org/keywords/connectome","display_name":"Connectome","score":0.10763755440711975},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.09432661533355713}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6604341864585876},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6407265067100525},{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.576624870300293},{"id":"https://openalex.org/C2779097318","wikidata":"https://www.wikidata.org/wiki/Q2993446","display_name":"Connectomics","level":4,"score":0.5759120583534241},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.534641444683075},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5178268551826477},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5171772837638855},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.4574810862541199},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3987720012664795},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.1324266791343689},{"id":"https://openalex.org/C45715564","wikidata":"https://www.wikidata.org/wiki/Q1292103","display_name":"Connectome","level":3,"score":0.10763755440711975},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.09432661533355713},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C3018011982","wikidata":"https://www.wikidata.org/wiki/Q7316120","display_name":"Functional connectivity","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001369","descriptor_name":"Axons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001369","descriptor_name":"Axons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001369","descriptor_name":"Axons","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D002144","descriptor_name":"Callithrix","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002144","descriptor_name":"Callithrix","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002144","descriptor_name":"Callithrix","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056324","descriptor_name":"Diffusion Tensor Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056324","descriptor_name":"Diffusion Tensor Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056324","descriptor_name":"Diffusion Tensor Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tmi.2018.2855736","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2018.2855736","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:30010551","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30010551","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311405","display_name":"Japan Agency for Medical Research and Development","ror":"https://ror.org/004rtk039"},{"id":"https://openalex.org/F4320320912","display_name":"Ministry of Education, Culture, Sports, Science and Technology","ror":"https://ror.org/048rj2z13"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W142171117","https://openalex.org/W1133283280","https://openalex.org/W1519833946","https://openalex.org/W1587637157","https://openalex.org/W1969963182","https://openalex.org/W1975389666","https://openalex.org/W1989396876","https://openalex.org/W1998874218","https://openalex.org/W2003493421","https://openalex.org/W2014252132","https://openalex.org/W2018227909","https://openalex.org/W2019064108","https://openalex.org/W2035257365","https://openalex.org/W2036901575","https://openalex.org/W2054870083","https://openalex.org/W2064886678","https://openalex.org/W2084454712","https://openalex.org/W2096361178","https://openalex.org/W2106706098","https://openalex.org/W2116018917","https://openalex.org/W2140854449","https://openalex.org/W2156012604","https://openalex.org/W2159024536","https://openalex.org/W2202170526","https://openalex.org/W2345173121","https://openalex.org/W2403547050","https://openalex.org/W2509170652","https://openalex.org/W2547794763","https://openalex.org/W2560171554","https://openalex.org/W2566436470","https://openalex.org/W2571219130","https://openalex.org/W2584131486","https://openalex.org/W2587001086","https://openalex.org/W2592871976","https://openalex.org/W2594660495","https://openalex.org/W2596475943","https://openalex.org/W2600862990","https://openalex.org/W2783547169","https://openalex.org/W2794495549","https://openalex.org/W2950062384","https://openalex.org/W2951175011","https://openalex.org/W2952846208","https://openalex.org/W6631362055","https://openalex.org/W6735046711"],"related_works":["https://openalex.org/W2212379672","https://openalex.org/W2424680827","https://openalex.org/W2807503652","https://openalex.org/W2079675757","https://openalex.org/W2912524409","https://openalex.org/W2532575085","https://openalex.org/W4251316676","https://openalex.org/W4287673583","https://openalex.org/W3083399682","https://openalex.org/W3093145634"],"abstract_inverted_index":{"A":[0],"major":[1],"goal":[2],"of":[3,13,25,48,62,69,96,125,132,138,158,180,211,225,244],"contemporary":[4],"neuroscience":[5],"research":[6],"is":[7,33,169],"to":[8,55,112,118,122,128,207,257],"map":[9],"the":[10,23,49,60,99,103,123,129,156,202,216,241],"structural":[11],"connectivity":[12],"mammalian":[14],"brain":[15,92],"using":[16,85,234],"microscopy":[17,31,87],"imaging":[18],"data.":[19,251],"In":[20],"this":[21],"context,":[22],"reconstruction":[24],"densely":[26,66,181,258],"labeled":[27,67,182,259],"axons":[28,50,64,159,203,260],"from":[29,77,265],"two-photon":[30,86],"images":[32,47,82,179,263],"a":[34,148,170,186,208,221,230,235],"challenging":[35],"and":[36,43,88,102,165],"important":[37],"task.":[38],"The":[39],"visually":[40],"overlapping,":[41],"crossing,":[42],"often":[44],"strongly":[45],"distorted":[46],"allow":[51],"many":[52],"ambiguous":[53],"interpretations":[54],"be":[56],"made.":[57],"We":[58,146,239],"address":[59],"problem":[61],"tracking":[63,142,151,157,172],"in":[65,71,160,204,261],"samples":[68],"neurons":[70],"large":[72,104,187,262],"image":[73,100,191,197,206],"data":[74,105,120],"sets":[75,137],"acquired":[76,84,264],"marmoset":[78,266],"brains.":[79,267],"Our":[80],"high-resolution":[81],"were":[83],"they":[89],"provided":[90],"whole":[91],"coverage,":[93],"occupying":[94],"terabytes":[95],"memory.":[97],"Both":[98],"distortions":[101],"set":[106],"size":[107],"frequently":[108],"make":[109],"it":[110],"impractical":[111],"apply":[113,255],"present-day":[114],"neuron":[115],"tracing":[116,131],"algorithms":[117,127],"such":[119,126],"due":[121],"optimization":[124,237],"precise":[130],"either":[133],"single":[134,222],"or":[135],"sparse":[136,209,217],"neurons.":[139],"Thus,":[140],"new":[141],"techniques":[143],"are":[144],"needed.":[145],"propose":[147],"probabilistic":[149,171,236],"axon":[150,212,226],"algorithm":[152,173],"(PAT).":[153],"PAT":[154,245,256],"tackles":[155],"two":[161],"steps:":[162],"locally":[163],"(L-PAT)":[164],"globally":[166],"(G-PAT).":[167],"L-PAT":[168,184,218],"that":[174],"can":[175],"tackle":[176],"distorted,":[177],"cluttered":[178],"axons.":[183],"divides":[185],"micrograph":[188],"into":[189,220],"smaller":[190],"stacks.":[192],"It":[193],"then":[194],"processes":[195],"each":[196,205],"stack":[198],"independently":[199],"before":[200],"mapping":[201],"model":[210,224],"trajectories.":[213],"G-PAT":[214],"merges":[215],"models":[219],"global":[223,231],"trajectories":[227],"by":[228],"minimizing":[229],"objective":[232],"function":[233],"method.":[238],"demonstrate":[240],"superior":[242],"performance":[243],"over":[246],"standard":[247],"approaches":[248],"on":[249],"synthetic":[250],"Furthermore,":[252],"we":[253],"successfully":[254]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
