{"id":"https://openalex.org/W2566658318","doi":"https://doi.org/10.1109/tmi.2016.2646518","title":"Fluorescence Diffusion in the Presence of Optically Clear Tissues in a Mouse Head Model","display_name":"Fluorescence Diffusion in the Presence of Optically Clear Tissues in a Mouse Head Model","publication_year":2016,"publication_date":"2016-12-29","ids":{"openalex":"https://openalex.org/W2566658318","doi":"https://doi.org/10.1109/tmi.2016.2646518","mag":"2566658318","pmid":"https://pubmed.ncbi.nlm.nih.gov/28055860"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2016.2646518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2016.2646518","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016720274","display_name":"Daniele Ancora","orcid":"https://orcid.org/0000-0002-1232-4112"},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Daniele Ancora","raw_affiliation_strings":["Institute of Electronic Structure & Laser, Foundation for Research and Technology - Hellas, Heraklion, Greece","Material Science Department, University of Crete, Heraklion, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Electronic Structure & Laser, Foundation for Research and Technology - Hellas, Heraklion, Greece","institution_ids":["https://openalex.org/I8901234"]},{"raw_affiliation_string":"Material Science Department, University of Crete, Heraklion, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018740686","display_name":"Athanasios Zacharopoulos","orcid":"https://orcid.org/0000-0003-3700-6898"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Athanasios Zacharopoulos","raw_affiliation_strings":["Institute of Electronic Structure & Laser, Foundation for Research and Technology - Hellas, Heraklion, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Electronic Structure & Laser, Foundation for Research and Technology - Hellas, Heraklion, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001905057","display_name":"Jorge Ripoll","orcid":"https://orcid.org/0000-0001-8856-7738"},"institutions":[{"id":"https://openalex.org/I2960094004","display_name":"Hospital General Universitario Gregorio Mara\u00f1\u00f3n","ror":"https://ror.org/0111es613","country_code":"ES","type":"healthcare","lineage":["https://openalex.org/I2960094004","https://openalex.org/I4210139293"]},{"id":"https://openalex.org/I50357001","display_name":"Universidad Carlos III de Madrid","ror":"https://ror.org/03ths8210","country_code":"ES","type":"education","lineage":["https://openalex.org/I50357001"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Jorge Ripoll","raw_affiliation_strings":["Department of Bio-engineering and Aerospace Engineering, Universidad Carlos III de Madrid, Madrid, Spain","Experimental Medicine and Surgery Unit, Instituto de Investigaci\u00f3n Sanitaria del Hospital Gregorio Mara\u00f1\u00f3n, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bio-engineering and Aerospace Engineering, Universidad Carlos III de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I50357001"]},{"raw_affiliation_string":"Experimental Medicine and Surgery Unit, Instituto de Investigaci\u00f3n Sanitaria del Hospital Gregorio Mara\u00f1\u00f3n, Madrid, Spain","institution_ids":["https://openalex.org/I2960094004"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089492812","display_name":"Giannis Zacharakis","orcid":"https://orcid.org/0000-0002-6438-0773"},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Giannis Zacharakis","raw_affiliation_strings":["Institute of Electronic Structure & Laser, Foundation for Research and Technology - Hellas, Heraklion, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Electronic Structure & Laser, Foundation for Research and Technology - Hellas, Heraklion, Greece","institution_ids":["https://openalex.org/I8901234"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.7069,"has_fulltext":false,"cited_by_count":8,"citation_normalized_percentile":{"value":0.84866921,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"36","issue":"5","first_page":"1086","last_page":"1093"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10977","display_name":"Optical Imaging and Spectroscopy Techniques","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11109","display_name":"Thermoregulation and physiological responses","score":0.9629999995231628,"subfield":{"id":"https://openalex.org/subfields/2737","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/diffuse-optical-imaging","display_name":"Diffuse optical imaging","score":0.6877524852752686},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5455803275108337},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5380674600601196},{"id":"https://openalex.org/keywords/monte-carlo-method","display_name":"Monte Carlo method","score":0.5349997282028198},{"id":"https://openalex.org/keywords/neuroimaging","display_name":"Neuroimaging","score":0.4922145903110504},{"id":"https://openalex.org/keywords/fluorescence","display_name":"Fluorescence","score":0.4668859541416168},{"id":"https://openalex.org/keywords/iterative-reconstruction","display_name":"Iterative reconstruction","score":0.462721049785614},{"id":"https://openalex.org/keywords/optical-tomography","display_name":"Optical tomography","score":0.4513572156429291},{"id":"https://openalex.org/keywords/tomography","display_name":"Tomography","score":0.4500347971916199},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4383714497089386},{"id":"https://openalex.org/keywords/photon","display_name":"Photon","score":0.42682990431785583},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.42171531915664673},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.40835994482040405},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.3853532075881958},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3733886182308197},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2794325649738312},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22268149256706238},{"id":"https://openalex.org/keywords/geology","display_name":"Geology","score":0.14084500074386597}],"concepts":[{"id":"https://openalex.org/C145417883","wikidata":"https://www.wikidata.org/wiki/Q5275421","display_name":"Diffuse optical imaging","level":3,"score":0.6877524852752686},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5455803275108337},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5380674600601196},{"id":"https://openalex.org/C19499675","wikidata":"https://www.wikidata.org/wiki/Q232207","display_name":"Monte Carlo method","level":2,"score":0.5349997282028198},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.4922145903110504},{"id":"https://openalex.org/C91881484","wikidata":"https://www.wikidata.org/wiki/Q191807","display_name":"Fluorescence","level":2,"score":0.4668859541416168},{"id":"https://openalex.org/C141379421","wikidata":"https://www.wikidata.org/wiki/Q6094427","display_name":"Iterative reconstruction","level":2,"score":0.462721049785614},{"id":"https://openalex.org/C2777413408","wikidata":"https://www.wikidata.org/wiki/Q1968843","display_name":"Optical tomography","level":3,"score":0.4513572156429291},{"id":"https://openalex.org/C163716698","wikidata":"https://www.wikidata.org/wiki/Q841267","display_name":"Tomography","level":2,"score":0.4500347971916199},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4383714497089386},{"id":"https://openalex.org/C159317903","wikidata":"https://www.wikidata.org/wiki/Q3198","display_name":"Photon","level":2,"score":0.42682990431785583},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.42171531915664673},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.40835994482040405},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.3853532075881958},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3733886182308197},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2794325649738312},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22268149256706238},{"id":"https://openalex.org/C127313418","wikidata":"https://www.wikidata.org/wiki/Q1069","display_name":"Geology","level":0,"score":0.14084500074386597},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004058","descriptor_name":"Diffusion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006257","descriptor_name":"Head","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006257","descriptor_name":"Head","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006257","descriptor_name":"Head","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009010","descriptor_name":"Monte Carlo Method","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012542","descriptor_name":"Scattering, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012542","descriptor_name":"Scattering, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012542","descriptor_name":"Scattering, Radiation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041622","descriptor_name":"Tomography, Optical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041622","descriptor_name":"Tomography, Optical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D041622","descriptor_name":"Tomography, Optical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tmi.2016.2646518","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2016.2646518","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:28055860","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/28055860","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/11","display_name":"Sustainable cities and communities","score":0.49000000953674316}],"awards":[{"id":"https://openalex.org/G659721148","display_name":null,"funder_award_id":"PITN-GA-2012-317526","funder_id":"https://openalex.org/F4320338080","funder_display_name":"European Social Fund"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320338080","display_name":"European Social Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W1967975932","https://openalex.org/W1968064570","https://openalex.org/W1982458486","https://openalex.org/W1988418842","https://openalex.org/W1994458472","https://openalex.org/W1998223164","https://openalex.org/W2000443157","https://openalex.org/W2006163783","https://openalex.org/W2008667540","https://openalex.org/W2013125633","https://openalex.org/W2030224529","https://openalex.org/W2034616341","https://openalex.org/W2037215141","https://openalex.org/W2039026859","https://openalex.org/W2047615998","https://openalex.org/W2059369279","https://openalex.org/W2062089313","https://openalex.org/W2064358322","https://openalex.org/W2067203318","https://openalex.org/W2071747263","https://openalex.org/W2072697429","https://openalex.org/W2075095245","https://openalex.org/W2079961815","https://openalex.org/W2080647067","https://openalex.org/W2083017679","https://openalex.org/W2084447368","https://openalex.org/W2085873825","https://openalex.org/W2102994171","https://openalex.org/W2118386984","https://openalex.org/W2126753599","https://openalex.org/W2131302229","https://openalex.org/W2132458261","https://openalex.org/W2143163067","https://openalex.org/W2158885582","https://openalex.org/W2164719261","https://openalex.org/W2165620657","https://openalex.org/W2166163757","https://openalex.org/W2170660817","https://openalex.org/W2324637046","https://openalex.org/W4238196042","https://openalex.org/W6700665093"],"related_works":["https://openalex.org/W2073776015","https://openalex.org/W4385335355","https://openalex.org/W4253832138","https://openalex.org/W2037916999","https://openalex.org/W3010250986","https://openalex.org/W2551384622","https://openalex.org/W2090799487","https://openalex.org/W2035082463","https://openalex.org/W2007798619","https://openalex.org/W2085165788"],"abstract_inverted_index":{"Diffuse":[0,50],"Optical":[1,51],"Tomography":[2,52],"commonly":[3],"neglects":[4],"or":[5],"assumes":[6],"as":[7,21],"insignificant":[8],"the":[9,39,61,68,86,92,95,100,104,110,141,144,149,153,157,189],"presence":[10,62],"of":[11,41,63,71,94,99,126,152,156],"optically":[12,136],"clear":[13],"regions":[14,138],"in":[15,36,38,60,91,109,124,140],"biological":[16],"tissues,":[17],"estimating":[18],"their":[19],"contribution":[20],"a":[22,42,55,182,191],"small":[23,69],"perturbation":[24],"to":[25,169,175,195],"light":[26],"transport.":[27],"The":[28,106],"inaccuracy":[29],"introduced":[30,81],"by":[31,131,148],"this":[32,160],"practice":[33],"is":[34,58,80,146],"examined":[35],"detail":[37],"context":[40],"complete,":[43],"based":[44],"on":[45,181],"realistic":[46],"geometry,":[47],"virtual":[48],"fluorescence":[49,101,117],"experiment":[53],"where":[54,143],"mouse":[56],"head":[57],"imaged":[59],"cerebral":[64],"spinal":[65],"fluid.":[66],"Despite":[67],"thickness":[70],"such":[72],"layer,":[73],"we":[74],"point":[75],"out":[76],"that":[77,116,173],"an":[78,165],"error":[79],"when":[82],"neglecting":[83],"it":[84],"from":[85],"model":[87],"with":[88],"possibly":[89],"reduction":[90],"accuracy":[93],"reconstruction":[96,130,145],"and":[97,128],"localization":[98],"distribution":[102],"within":[103],"brain.":[105],"results":[107],"obtained":[108],"extensive":[111],"study":[112],"presented":[113],"here":[114],"suggest":[115],"diffuse":[118],"neuroimaging":[119],"studies":[120],"can":[121],"be":[122],"improved":[123],"terms":[125],"quantitative":[127],"qualitative":[129],"accurately":[132],"taking":[133],"into":[134],"account":[135],"transparent":[137],"especially":[139],"cases":[142],"aided":[147],"prior":[150],"knowledge":[151],"structural":[154],"geometry":[155],"specimen.":[158],"Thus,":[159],"has":[161],"only":[162],"recently":[163],"become":[164],"affordable":[166],"choice,":[167],"thanks":[168],"novel":[170],"computation":[171],"paradigms":[172],"allow":[174],"run":[176],"Monte":[177],"Carlo":[178],"photon":[179],"propagation":[180],"simple":[183],"graphic":[184],"card,":[185],"hence":[186],"speeding":[187],"up":[188],"process":[190],"thousand":[192],"folds":[193],"compared":[194],"CPU-based":[196],"solutions.":[197]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
