{"id":"https://openalex.org/W2345173121","doi":"https://doi.org/10.1109/tmi.2016.2515068","title":"Neurite Tracing With Object Process","display_name":"Neurite Tracing With Object Process","publication_year":2016,"publication_date":"2016-01-06","ids":{"openalex":"https://openalex.org/W2345173121","doi":"https://doi.org/10.1109/tmi.2016.2515068","mag":"2345173121","pmid":"https://pubmed.ncbi.nlm.nih.gov/26742129"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2016.2515068","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2016.2515068","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hal.sorbonne-universite.fr/hal-01366490","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5069407731","display_name":"Sreetama Basu","orcid":"https://orcid.org/0000-0001-9528-1025"},"institutions":[{"id":"https://openalex.org/I4210129409","display_name":"Institut de Biologie de l'\u00c9cole Normale Sup\u00e9rieure","ror":"https://ror.org/03mxktp47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I2746051580","https://openalex.org/I29607241","https://openalex.org/I4210096427","https://openalex.org/I4210129409"]},{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["FR","SG"],"is_corresponding":true,"raw_author_name":"Sreetama Basu","raw_affiliation_strings":["National University of Singapore, School of Computing, Singapore","\u00c9cole Normale Sup\u00e9rieure, Institute of Biology, Paris, France"],"affiliations":[{"raw_affiliation_string":"National University of Singapore, School of Computing, Singapore","institution_ids":["https://openalex.org/I165932596"]},{"raw_affiliation_string":"\u00c9cole Normale Sup\u00e9rieure, Institute of Biology, Paris, France","institution_ids":["https://openalex.org/I4210129409"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072587271","display_name":"Wei Tsang Ooi","orcid":"https://orcid.org/0000-0001-8994-1736"},"institutions":[{"id":"https://openalex.org/I165932596","display_name":"National University of Singapore","ror":"https://ror.org/01tgyzw49","country_code":"SG","type":"education","lineage":["https://openalex.org/I165932596"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Wei Tsang Ooi","raw_affiliation_strings":["National University of Singapore, School of Computing, Singapore"],"affiliations":[{"raw_affiliation_string":"National University of Singapore, School of Computing, Singapore","institution_ids":["https://openalex.org/I165932596"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066171121","display_name":"Daniel Racoceanu","orcid":"https://orcid.org/0000-0002-9416-1803"},"institutions":[{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210118047","display_name":"Laboratoire d\u2019Imagerie Biom\u00e9dicale","ror":"https://ror.org/02b9znm90","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210096427","https://openalex.org/I4210118047"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"funder","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Daniel Racoceanu","raw_affiliation_strings":["UPMC Univ Paris 06, CNRS, INSERM, Laboratoire d'Imagerie Biom\u00e9dicale, Paris, France"],"affiliations":[{"raw_affiliation_string":"UPMC Univ Paris 06, CNRS, INSERM, Laboratoire d'Imagerie Biom\u00e9dicale, Paris, France","institution_ids":["https://openalex.org/I4210118047","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5069407731"],"corresponding_institution_ids":["https://openalex.org/I165932596","https://openalex.org/I4210129409"],"apc_list":null,"apc_paid":null,"fwci":3.3746,"has_fulltext":false,"cited_by_count":19,"citation_normalized_percentile":{"value":0.92353801,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"35","issue":"6","first_page":"1443","last_page":"1451"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9811999797821045,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10379","display_name":"Cellular Mechanics and Interactions","score":0.9722999930381775,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracing","display_name":"Tracing","score":0.7259883284568787},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7231181859970093},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6222389936447144},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5673650503158569},{"id":"https://openalex.org/keywords/mathematical-morphology","display_name":"Mathematical morphology","score":0.49435997009277344},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.4569843113422394},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4317849278450012},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.34510743618011475},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1543494462966919}],"concepts":[{"id":"https://openalex.org/C138673069","wikidata":"https://www.wikidata.org/wiki/Q322229","display_name":"Tracing","level":2,"score":0.7259883284568787},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7231181859970093},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6222389936447144},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5673650503158569},{"id":"https://openalex.org/C185568154","wikidata":"https://www.wikidata.org/wiki/Q530242","display_name":"Mathematical morphology","level":4,"score":0.49435997009277344},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.4569843113422394},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4317849278450012},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.34510743618011475},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1543494462966919},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008853","descriptor_name":"Microscopy","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013269","descriptor_name":"Stochastic Processes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016501","descriptor_name":"Neurites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016501","descriptor_name":"Neurites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016501","descriptor_name":"Neurites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017173","descriptor_name":"Caenorhabditis elegans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tmi.2016.2515068","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2016.2515068","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:26742129","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26742129","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null},{"id":"pmh:oai:HAL:hal-01366490v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-01366490","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Medical Imaging, 2016, 35 (6), pp. 1443-1451. &#x27E8;10.1109/TMI.2016.2515068&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"pmh:oai:HAL:hal-01366490v1","is_oa":true,"landing_page_url":"https://hal.sorbonne-universite.fr/hal-01366490","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Medical Imaging, 2016, 35 (6), pp. 1443-1451. &#x27E8;10.1109/TMI.2016.2515068&#x27E9;","raw_type":"Journal articles"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":45,"referenced_works":["https://openalex.org/W142171117","https://openalex.org/W1517038079","https://openalex.org/W1800133816","https://openalex.org/W1965680834","https://openalex.org/W1971167883","https://openalex.org/W1973195069","https://openalex.org/W1980719666","https://openalex.org/W1981764342","https://openalex.org/W1986141983","https://openalex.org/W1995129909","https://openalex.org/W2010467836","https://openalex.org/W2022937801","https://openalex.org/W2030179996","https://openalex.org/W2036591396","https://openalex.org/W2036901575","https://openalex.org/W2042979304","https://openalex.org/W2045264393","https://openalex.org/W2052202330","https://openalex.org/W2052516389","https://openalex.org/W2056834257","https://openalex.org/W2061628168","https://openalex.org/W2064397224","https://openalex.org/W2071646331","https://openalex.org/W2084972763","https://openalex.org/W2097062636","https://openalex.org/W2104827963","https://openalex.org/W2124257654","https://openalex.org/W2128089874","https://openalex.org/W2129534965","https://openalex.org/W2134756983","https://openalex.org/W2145803225","https://openalex.org/W2150026779","https://openalex.org/W2153965609","https://openalex.org/W2156012604","https://openalex.org/W2156114286","https://openalex.org/W2157408013","https://openalex.org/W2160308091","https://openalex.org/W2160938187","https://openalex.org/W2164751492","https://openalex.org/W2171234607","https://openalex.org/W2896802371","https://openalex.org/W3035934914","https://openalex.org/W4255306344","https://openalex.org/W6638545138","https://openalex.org/W6683135916"],"related_works":["https://openalex.org/W2357143406","https://openalex.org/W2349459011","https://openalex.org/W2378070670","https://openalex.org/W2381399653","https://openalex.org/W2058740282","https://openalex.org/W2017449983","https://openalex.org/W2340724640","https://openalex.org/W2375111338","https://openalex.org/W2220864757","https://openalex.org/W2352304637"],"abstract_inverted_index":{"In":[0],"this":[1],"paper":[2],"we":[3,20,106],"present":[4,21],"a":[5,121],"pipeline":[6,167],"for":[7,95,155],"automatic":[8],"analysis":[9,160],"of":[10,42,48,66,71,170],"neuronal":[11,36,67,100,108,134],"morphology:":[12],"from":[13,136],"detection,":[14],"modeling":[15,65],"to":[16,45,185],"digital":[17,146],"reconstruction.":[18],"First,":[19],"an":[22],"automatic,":[23],"unsupervised":[24],"object":[25],"detection":[26],"framework":[27],"using":[28,111],"stochastic":[29],"marked":[30,43],"point":[31],"process.":[32],"It":[33],"extracts":[34],"connected":[35,141],"networks":[37],"by":[38],"fitting":[39],"special":[40],"configuration":[41],"objects":[44],"the":[46,49,53,103,126,137,162,171,179],"centreline":[47],"neurite":[50,91],"branches":[51,105,135],"in":[52,69,150,161,174,182],"image":[54],"volume":[55],"giving":[56],"us":[57],"position,":[58,128],"local":[59],"width":[60],"and":[61,76,81,113,130,158,177],"orientation":[62],"information.":[63],"Semantic":[64],"morphology":[68,82,110],"terms":[70],"critical":[72],"nodes":[73],"like":[74],"bifurcations":[75],"terminals,":[77],"generates":[78],"various":[79],"geometric":[80],"descriptors":[83],"such":[84],"as":[85],"branching":[86,88],"index,":[87],"angles,":[89],"total":[90],"length,":[92],"internodal":[93],"lengths":[94],"statistical":[96],"inference":[97],"on":[98],"characteristic":[99],"features.":[101],"From":[102],"detected":[104],"reconstruct":[107],"tree":[109],"robust":[112],"efficient":[114],"numerical":[115],"fast":[116],"marching":[117],"methods.":[118,187],"We":[119],"capture":[120],"mathematical":[122],"model":[123],"abstracting":[124],"out":[125],"relevant":[127],"shape":[129],"connectivity":[131],"information":[132],"about":[133],"microscopy":[138],"data":[139],"into":[140],"minimum":[142],"spanning":[143],"trees.":[144],"Such":[145],"reconstruction":[147],"is":[148],"represented":[149],"standard":[151],"SWC":[152],"format,":[153],"prevalent":[154],"archiving,":[156],"sharing,":[157],"further":[159],"neuroimaging":[163],"community.":[164],"Our":[165],"proposed":[166],"outperforms":[168],"state":[169],"art":[172],"methods":[173],"tracing":[175],"accuracy":[176],"minimizes":[178],"subjective":[180],"variability":[181],"reconstruction,":[183],"inherent":[184],"semi-automatic":[186]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
