{"id":"https://openalex.org/W1147193425","doi":"https://doi.org/10.1109/tmi.2015.2470529","title":"Triaging Diagnostically Relevant Regions from Pathology Whole Slides of Breast Cancer: A Texture Based Approach","display_name":"Triaging Diagnostically Relevant Regions from Pathology Whole Slides of Breast Cancer: A Texture Based Approach","publication_year":2015,"publication_date":"2015-08-20","ids":{"openalex":"https://openalex.org/W1147193425","doi":"https://doi.org/10.1109/tmi.2015.2470529","mag":"1147193425","pmid":"https://pubmed.ncbi.nlm.nih.gov/26302511"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2015.2470529","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2015.2470529","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011799999","display_name":"Mohammad Peikari","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mohammad Peikari","raw_affiliation_strings":["Medical Biophysics, University of Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Biophysics, University of Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031884787","display_name":"Mehrdad J. Gangeh","orcid":"https://orcid.org/0000-0002-2907-3014"},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Mehrdad J. Gangeh","raw_affiliation_strings":["Medical Biophysics, University of Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Biophysics, University of Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081573544","display_name":"Judit Zubovits","orcid":null},"institutions":[{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Judit Zubovits","raw_affiliation_strings":["Faculty of Medicine, University of Toronto, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Medicine, University of Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020382116","display_name":"G. Clarke","orcid":"https://orcid.org/0000-0001-6020-6287"},"institutions":[{"id":"https://openalex.org/I1323843004","display_name":"Sunnybrook Health Science Centre","ror":"https://ror.org/03wefcv03","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1323843004"]},{"id":"https://openalex.org/I4391768120","display_name":"Sunnybrook Research Institute","ror":"https://ror.org/05n0tzs53","country_code":null,"type":"facility","lineage":["https://openalex.org/I1323843004","https://openalex.org/I185261750","https://openalex.org/I4391768120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Gina Clarke","raw_affiliation_strings":["Physical Sciences, Sunnybrook Research Institute, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Physical Sciences, Sunnybrook Research Institute, Canada","institution_ids":["https://openalex.org/I1323843004","https://openalex.org/I4391768120"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029260213","display_name":"Anne L. Martel","orcid":"https://orcid.org/0000-0003-1375-5501"},"institutions":[{"id":"https://openalex.org/I1323843004","display_name":"Sunnybrook Health Science Centre","ror":"https://ror.org/03wefcv03","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I1323843004"]},{"id":"https://openalex.org/I185261750","display_name":"University of Toronto","ror":"https://ror.org/03dbr7087","country_code":"CA","type":"education","lineage":["https://openalex.org/I185261750"]},{"id":"https://openalex.org/I4391768120","display_name":"Sunnybrook Research Institute","ror":"https://ror.org/05n0tzs53","country_code":null,"type":"facility","lineage":["https://openalex.org/I1323843004","https://openalex.org/I185261750","https://openalex.org/I4391768120"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Anne L. Martel","raw_affiliation_strings":["Medical Biophysics, University of Toronto, Canada","Physical Sciences, Sunnybrook Research Institute, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Medical Biophysics, University of Toronto, Canada","institution_ids":["https://openalex.org/I185261750"]},{"raw_affiliation_string":"Physical Sciences, Sunnybrook Research Institute, Canada","institution_ids":["https://openalex.org/I1323843004","https://openalex.org/I4391768120"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":10.6842,"has_fulltext":false,"cited_by_count":73,"citation_normalized_percentile":{"value":0.98178077,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"35","issue":"1","first_page":"307","last_page":"315"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9225999712944031,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9225999712944031,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.016100000590085983,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11134","display_name":"Breast Lesions and Carcinomas","score":0.00989999994635582,"subfield":{"id":"https://openalex.org/subfields/2734","display_name":"Pathology and Forensic Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/breast-cancer","display_name":"Breast cancer","score":0.6393770575523376},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.5403693914413452},{"id":"https://openalex.org/keywords/texture","display_name":"Texture (cosmology)","score":0.4858340919017792},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.4521600604057312},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4310302734375},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.42812949419021606},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4194043278694153},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.4065055251121521},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.32510048151016235},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.20414012670516968},{"id":"https://openalex.org/keywords/internal-medicine","display_name":"Internal medicine","score":0.1289151906967163}],"concepts":[{"id":"https://openalex.org/C530470458","wikidata":"https://www.wikidata.org/wiki/Q128581","display_name":"Breast cancer","level":3,"score":0.6393770575523376},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.5403693914413452},{"id":"https://openalex.org/C2781195486","wikidata":"https://www.wikidata.org/wiki/Q289436","display_name":"Texture (cosmology)","level":3,"score":0.4858340919017792},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.4521600604057312},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4310302734375},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.42812949419021606},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4194043278694153},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.4065055251121521},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.32510048151016235},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.20414012670516968},{"id":"https://openalex.org/C126322002","wikidata":"https://www.wikidata.org/wiki/Q11180","display_name":"Internal medicine","level":1,"score":0.1289151906967163}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005260","descriptor_name":"Female","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tmi.2015.2470529","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2015.2470529","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:26302511","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26302511","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320312516","display_name":"Sunnybrook Research Institute","ror":null},{"id":"https://openalex.org/F4320321097","display_name":"Kela","ror":"https://ror.org/057yw0190"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W91932901","https://openalex.org/W1597336200","https://openalex.org/W1888786797","https://openalex.org/W1900291629","https://openalex.org/W1965451568","https://openalex.org/W1969624577","https://openalex.org/W1975103383","https://openalex.org/W1975999319","https://openalex.org/W1978566161","https://openalex.org/W1988039346","https://openalex.org/W1999318832","https://openalex.org/W2039833474","https://openalex.org/W2040414046","https://openalex.org/W2046781710","https://openalex.org/W2053031424","https://openalex.org/W2076976284","https://openalex.org/W2087484885","https://openalex.org/W2091662955","https://openalex.org/W2103243046","https://openalex.org/W2104256360","https://openalex.org/W2108082645","https://openalex.org/W2112162870","https://openalex.org/W2118286367","https://openalex.org/W2126636350","https://openalex.org/W2126858379","https://openalex.org/W2132054709","https://openalex.org/W2142838865","https://openalex.org/W2145236917","https://openalex.org/W2148123652","https://openalex.org/W2150461375","https://openalex.org/W2151103935","https://openalex.org/W2151608510","https://openalex.org/W2152548630","https://openalex.org/W2153635508","https://openalex.org/W2159257032","https://openalex.org/W2160477239","https://openalex.org/W2165324514","https://openalex.org/W2168593098","https://openalex.org/W2170566684","https://openalex.org/W2171668558","https://openalex.org/W3099404130","https://openalex.org/W6603746958","https://openalex.org/W6635816984","https://openalex.org/W6639429256"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W1975767702","https://openalex.org/W3128797991","https://openalex.org/W4212803330","https://openalex.org/W4390879800","https://openalex.org/W4283827404","https://openalex.org/W2375584271","https://openalex.org/W1997105855","https://openalex.org/W4289646162","https://openalex.org/W2470965540"],"abstract_inverted_index":{"PURPOSE:":[0],"Pathologists":[1],"often":[2],"look":[3],"at":[4,9,62,83],"whole":[5,112],"slide":[6],"images":[7],"(WSIs)":[8],"low":[10,84],"magnification":[11,23],"to":[12,21,24,40,47,76,92,126,155,161,184,187,239],"find":[13],"potentially":[14,78],"important":[15,79,103,242],"regions":[16,50,80],"and":[17,120,137,192,220],"then":[18,53,153],"zoom":[19],"in":[20,45],"higher":[22],"perform":[25],"more":[26,58],"sophisticated":[27],"analysis":[28,38,90,197],"of":[29,36,96,145,148,165,182,231],"the":[30,42,94,111,179,228],"tissue":[31,113,207],"structures.":[32],"Many":[33],"automated":[34],"methods":[35,223],"WSI":[37],"attempt":[39],"preprocess":[41],"down-sampled":[43],"image":[44,169,200],"order":[46],"select":[48],"salient":[49],"which":[51],"are":[52],"further":[54],"analyzed":[55],"by":[56,100],"a":[57,88],"computationally":[59],"intensive":[60],"step":[61],"full":[63],"magnification.":[64,85],"Although":[65],"it":[66],"can":[67,236],"greatly":[68],"reduce":[69],"processing":[70,95],"times,":[71],"this":[72],"process":[73],"may":[74],"lead":[75],"small":[77],"being":[81],"overlooked":[82],"We":[86],"propose":[87],"texture":[89,122,213],"technique":[91,214],"ease":[93],"H&E":[97],"stained":[98],"WSIs":[99],"triaging":[101],"clinically":[102,190,241],"regions.":[104],"METHOD:":[105],"Image":[106],"patches":[107,201],"randomly":[108],"selected":[109],"from":[110,131,142,159,202],"area":[114,226],"were":[115,124,134,140],"divided":[116],"into":[117],"smaller":[118],"tiles":[119,160],"Gaussian-like":[121],"filters":[123],"applied":[125],"them.":[127],"Texture":[128,234],"filter":[129],"responses":[130],"each":[132],"tile":[133],"combined":[135],"together":[136],"statistical":[138],"measures":[139],"derived":[141],"their":[143],"histograms":[144,181],"responses.":[146],"Bag":[147],"visual":[149],"words":[150,166,183],"pipeline":[151],"was":[152,176],"employed":[154,238],"combine":[156],"extracted":[157],"features":[158,235],"form":[162],"one":[163],"histogram":[164],"per":[167],"every":[168],"patch.":[170],"A":[171],"support":[172],"vector":[173],"machine":[174],"classifier":[175],"trained":[177],"using":[178],"calculated":[180],"be":[185,237],"able":[186],"distinguish":[188],"between":[189],"relevant":[191],"irrelevant":[193],"patches.":[194],"RESULT:":[195],"Experimental":[196],"on":[198],"5151":[199],"10":[203],"patient":[204],"cases":[205],"(65":[206],"slides)":[208],"indicated":[209],"that":[210],"our":[211],"proposed":[212,218],"out-performed":[215],"two":[216],"previously":[217],"colour":[219],"intensity":[221],"based":[222],"with":[224],"an":[225],"under":[227],"ROC":[229],"curve":[230],"0.87.":[232],"CONCLUSION:":[233],"triage":[240],"areas":[243],"within":[244],"large":[245],"WSIs.":[246]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":10},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":14},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":3}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
