{"id":"https://openalex.org/W1519750838","doi":"https://doi.org/10.1109/tmi.2015.2437192","title":"Automatic Segmentation of the Spinal Cord and Spinal Canal Coupled With Vertebral Labeling","display_name":"Automatic Segmentation of the Spinal Cord and Spinal Canal Coupled With Vertebral Labeling","publication_year":2015,"publication_date":"2015-05-22","ids":{"openalex":"https://openalex.org/W1519750838","doi":"https://doi.org/10.1109/tmi.2015.2437192","mag":"1519750838","pmid":"https://pubmed.ncbi.nlm.nih.gov/26011879"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2015.2437192","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2015.2437192","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024133896","display_name":"Benjamin De Leener","orcid":"https://orcid.org/0000-0002-1378-2756"},"institutions":[{"id":"https://openalex.org/I45683168","display_name":"Polytechnique Montr\u00e9al","ror":"https://ror.org/05f8d4e86","country_code":"CA","type":"education","lineage":["https://openalex.org/I45683168"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Benjamin De Leener","raw_affiliation_strings":["Polytechnique Montreal at Montreal, Institute of Biomedical Engineering, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"Polytechnique Montreal at Montreal, Institute of Biomedical Engineering, Quebec, Canada","institution_ids":["https://openalex.org/I45683168"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009765322","display_name":"Julien Cohen\u2010Adad","orcid":"https://orcid.org/0000-0003-3662-9532"},"institutions":[{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]},{"id":"https://openalex.org/I45683168","display_name":"Polytechnique Montr\u00e9al","ror":"https://ror.org/05f8d4e86","country_code":"CA","type":"education","lineage":["https://openalex.org/I45683168"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Julien Cohen-Adad","raw_affiliation_strings":["Functional Neuroimaging Unit, Universit\u00e9 de Montr\u00e9al at Montreal, Quebec, Canada","Polytechnique Montreal at Montreal, Institute of Biomedical Engineering, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"Functional Neuroimaging Unit, Universit\u00e9 de Montr\u00e9al at Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I70931966"]},{"raw_affiliation_string":"Polytechnique Montreal at Montreal, Institute of Biomedical Engineering, Quebec, Canada","institution_ids":["https://openalex.org/I45683168"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039187492","display_name":"Samuel Kadoury","orcid":"https://orcid.org/0000-0002-3048-4291"},"institutions":[{"id":"https://openalex.org/I45683168","display_name":"Polytechnique Montr\u00e9al","ror":"https://ror.org/05f8d4e86","country_code":"CA","type":"education","lineage":["https://openalex.org/I45683168"]},{"id":"https://openalex.org/I2802351361","display_name":"Centre Hospitalier Universitaire Sainte-Justine","ror":"https://ror.org/01gv74p78","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2802351361"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Samuel Kadoury","raw_affiliation_strings":["CHU Sainte-Justine Research Center at Montreal, Quebec, Canada","Polytechnique Montreal at Montreal, Institute of Biomedical Engineering, Quebec, Canada"],"affiliations":[{"raw_affiliation_string":"CHU Sainte-Justine Research Center at Montreal, Quebec, Canada","institution_ids":["https://openalex.org/I2802351361"]},{"raw_affiliation_string":"Polytechnique Montreal at Montreal, Institute of Biomedical Engineering, Quebec, Canada","institution_ids":["https://openalex.org/I45683168"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5024133896"],"corresponding_institution_ids":["https://openalex.org/I45683168"],"apc_list":null,"apc_paid":null,"fwci":5.0999,"has_fulltext":false,"cited_by_count":90,"citation_normalized_percentile":{"value":0.9558684,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"34","issue":"8","first_page":"1705","last_page":"1718"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12549","display_name":"Image and Object Detection Techniques","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/spinal-cord","display_name":"Spinal cord","score":0.6176939010620117},{"id":"https://openalex.org/keywords/spinal-canal","display_name":"Spinal canal","score":0.5597046613693237},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.49948883056640625},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.4822540879249573},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.4760598838329315},{"id":"https://openalex.org/keywords/anatomy","display_name":"Anatomy","score":0.46204233169555664},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.417429655790329},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.3981980085372925},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3819665014743805},{"id":"https://openalex.org/keywords/radiology","display_name":"Radiology","score":0.32342541217803955}],"concepts":[{"id":"https://openalex.org/C2780775167","wikidata":"https://www.wikidata.org/wiki/Q9606","display_name":"Spinal cord","level":2,"score":0.6176939010620117},{"id":"https://openalex.org/C2779326565","wikidata":"https://www.wikidata.org/wiki/Q781983","display_name":"Spinal canal","level":3,"score":0.5597046613693237},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.49948883056640625},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.4822540879249573},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.4760598838329315},{"id":"https://openalex.org/C105702510","wikidata":"https://www.wikidata.org/wiki/Q514","display_name":"Anatomy","level":1,"score":0.46204233169555664},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.417429655790329},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3981980085372925},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3819665014743805},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.32342541217803955},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D013115","descriptor_name":"Spinal Canal","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D013115","descriptor_name":"Spinal Canal","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D013115","descriptor_name":"Spinal Canal","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D013116","descriptor_name":"Spinal Cord","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D013116","descriptor_name":"Spinal Cord","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D013116","descriptor_name":"Spinal Cord","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tmi.2015.2437192","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2015.2437192","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:26011879","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26011879","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null},{"id":"pmh:oai:publications.polymtl.ca:11230","is_oa":false,"landing_page_url":"https://publications.polymtl.ca/11230/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401013","display_name":"PolyPublie (\u00c9cole Polytechnique de Montr\u00e9al)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I45683168","host_organization_name":"Polytechnique Montr\u00e9al","host_organization_lineage":["https://openalex.org/I45683168"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article de revue"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.49000000953674316}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306161","display_name":"National Multiple Sclerosis Society","ror":"https://ror.org/03019wv17"},{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W22745672","https://openalex.org/W291003596","https://openalex.org/W332088525","https://openalex.org/W1493695579","https://openalex.org/W1499038423","https://openalex.org/W1514207599","https://openalex.org/W1558633536","https://openalex.org/W1790685488","https://openalex.org/W1922019553","https://openalex.org/W1967595294","https://openalex.org/W1970557382","https://openalex.org/W1976617592","https://openalex.org/W1979968489","https://openalex.org/W1984605529","https://openalex.org/W1987869189","https://openalex.org/W1988366576","https://openalex.org/W1988382024","https://openalex.org/W1994341389","https://openalex.org/W1998903569","https://openalex.org/W1999735263","https://openalex.org/W2000235810","https://openalex.org/W2002238228","https://openalex.org/W2008152557","https://openalex.org/W2008774262","https://openalex.org/W2015471391","https://openalex.org/W2018105832","https://openalex.org/W2020426992","https://openalex.org/W2021783258","https://openalex.org/W2028174673","https://openalex.org/W2028464246","https://openalex.org/W2045782417","https://openalex.org/W2053980954","https://openalex.org/W2059154358","https://openalex.org/W2063213455","https://openalex.org/W2064051348","https://openalex.org/W2069267524","https://openalex.org/W2075299521","https://openalex.org/W2076313431","https://openalex.org/W2082722092","https://openalex.org/W2092482557","https://openalex.org/W2094040154","https://openalex.org/W2103275591","https://openalex.org/W2104479126","https://openalex.org/W2112267127","https://openalex.org/W2113358261","https://openalex.org/W2114753511","https://openalex.org/W2117340355","https://openalex.org/W2167630042","https://openalex.org/W2169371923","https://openalex.org/W2188981179","https://openalex.org/W2318310523","https://openalex.org/W2911849323","https://openalex.org/W4205636746","https://openalex.org/W4253361434","https://openalex.org/W4285719527","https://openalex.org/W6633458381","https://openalex.org/W6638167736","https://openalex.org/W6641906735","https://openalex.org/W6647383776","https://openalex.org/W6655488723","https://openalex.org/W6674226168","https://openalex.org/W6687336782","https://openalex.org/W6806038161"],"related_works":["https://openalex.org/W2001086120","https://openalex.org/W2043188193","https://openalex.org/W1975416403","https://openalex.org/W2046365012","https://openalex.org/W2073700217","https://openalex.org/W2744889457","https://openalex.org/W1964895307","https://openalex.org/W2143191569","https://openalex.org/W4379231730","https://openalex.org/W1522196789"],"abstract_inverted_index":{"Quantifying":[0],"spinal":[1,142,198],"cord":[2],"(SC)":[3],"atrophy":[4,226],"in":[5,150,227],"neurodegenerative":[6],"and":[7,13,30,45,49,85,95,141,148,167,187,191,197,209,215],"traumatic":[8],"diseases":[9],"brings":[10],"important":[11],"diagnosis":[12],"prognosis":[14],"information":[15],"for":[16,27,72,101,108,194,212],"the":[17,22,34,58,65,73,117,139,219],"clinician.":[18],"We":[19],"recently":[20],"developed":[21],"PropSeg":[23,84],"method,":[24,90,131],"which":[25],"allows":[26],"fast,":[28],"accurate":[29],"automatic":[31,127,210],"segmentation":[32,112,133,214],"of":[33,39,52,67,98,120,138,224],"SC":[35,59,99,140,172,196,213,225],"on":[36,116,156,163,168],"different":[37],"types":[38],"MRI":[40],"contrast":[41],"(e.g.,":[42],"T1-,":[43],"T2-":[44],"T2(\u2217)":[46],"-weighted":[47],"sequences)":[48],"any":[50],"field":[51],"view.":[53],"However,":[54],"comparing":[55],"measurements":[56,100],"from":[57],"between":[60],"subjects":[61,166],"is":[62,114],"hindered":[63],"by":[64],"lack":[66],"a":[68,80,86,151,207],"generic":[69,152],"coordinate":[70,153],"system":[71,154],"SC.":[74],"In":[75],"this":[76],"paper,":[77],"we":[78],"present":[79],"new":[81],"framework":[82,160,211],"combining":[83],"vertebral":[87,157],"level":[88],"identification":[89,130],"thereby":[91],"enabling":[92],"direct":[93],"inter-":[94],"intra-subject":[96],"comparison":[97],"large":[102,228],"cohort":[103],"studies":[104],"as":[105,107,145],"well":[106],"longitudinal":[109],"studies.":[110],"Our":[111],"method":[113,186],"based":[115,155],"multi-resolution":[118],"propagation":[119],"tubular":[121],"deformable":[122],"models.":[123],"Coupled":[124],"with":[125,171,181],"an":[126,182],"intervertebral":[128],"disk":[129],"our":[132],"pipeline":[134],"provides":[135],"quantitative":[136],"metrics":[137],"canal":[143,199],"such":[144],"cross-sectional":[146],"areas":[147],"volumes":[149],"levels.":[158],"This":[159],"was":[161],"validated":[162],"17":[164],"healthy":[165],"one":[169],"patient":[170],"injury":[173],"against":[174],"manual":[175],"segmentation.":[176,205],"Results":[177],"have":[178],"been":[179],"compared":[180],"existing":[183],"active":[184],"surface":[185],"show":[188],"high":[189],"local":[190],"global":[192],"accuracy":[193],"both":[195],"(Dice":[200],"coefficients":[201],"=0.91":[202],"\u00b1":[203],"0.02)":[204],"Having":[206],"robust":[208],"vertebral-based":[216],"normalization":[217],"opens":[218],"door":[220],"to":[221],"bias-free":[222],"measurement":[223],"cohorts.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":6},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":12},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":3}],"updated_date":"2026-04-02T15:55:50.835912","created_date":"2025-10-10T00:00:00"}
