{"id":"https://openalex.org/W2107488381","doi":"https://doi.org/10.1109/tmi.2009.2036258","title":"Variational Image Segmentation for Endoscopic Human Colonic Aberrant Crypt Foci","display_name":"Variational Image Segmentation for Endoscopic Human Colonic Aberrant Crypt Foci","publication_year":2009,"publication_date":"2009-11-23","ids":{"openalex":"https://openalex.org/W2107488381","doi":"https://doi.org/10.1109/tmi.2009.2036258","mag":"2107488381","pmid":"https://pubmed.ncbi.nlm.nih.gov/19923042"},"language":"en","primary_location":{"id":"doi:10.1109/tmi.2009.2036258","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2009.2036258","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5013058058","display_name":"Isabel N. Figueiredo","orcid":"https://orcid.org/0000-0002-0215-8851"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"I.N. Figueiredo","raw_affiliation_strings":["Centre for Mathematics, Department ofMathematics, University of Coimbra, 3001-454 Coimbra, Portugal. isabelf@mat.uc.pt","Centre of Mathematics, Department of Mathematics, University of Coimbra, Coimbra, Portugal"],"affiliations":[{"raw_affiliation_string":"Centre for Mathematics, Department ofMathematics, University of Coimbra, 3001-454 Coimbra, Portugal. isabelf@mat.uc.pt","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"Centre of Mathematics, Department of Mathematics, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054977842","display_name":"Pedro Figueiredo","orcid":"https://orcid.org/0000-0001-9872-6341"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"P.N. Figueiredo","raw_affiliation_strings":["Department of Gastroenterology, University Hospital of Coimbra, Coimbra, Portugal","Faculty of Medicine, University of Coimbra, Coimbra, Portugal"],"affiliations":[{"raw_affiliation_string":"Department of Gastroenterology, University Hospital of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]},{"raw_affiliation_string":"Faculty of Medicine, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012373865","display_name":"Georg Stadler","orcid":"https://orcid.org/0000-0001-7762-6544"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"G. Stadler","raw_affiliation_strings":["Institute of Computational Engineering and Sciences, University of Texas, Austin, Austin, TX, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Engineering and Sciences, University of Texas, Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049331711","display_name":"Omar Ghattas","orcid":"https://orcid.org/0000-0001-7742-2509"},"institutions":[{"id":"https://openalex.org/I86519309","display_name":"The University of Texas at Austin","ror":"https://ror.org/00hj54h04","country_code":"US","type":"education","lineage":["https://openalex.org/I86519309"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"O. Ghattas","raw_affiliation_strings":["Institute of Computational Engineering and Sciences, University of Texas, Austin, Austin, TX, USA"],"affiliations":[{"raw_affiliation_string":"Institute of Computational Engineering and Sciences, University of Texas, Austin, Austin, TX, USA","institution_ids":["https://openalex.org/I86519309"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052356431","display_name":"Ad\u00e9rito Ara\u00fajo","orcid":"https://orcid.org/0000-0002-9873-5974"},"institutions":[{"id":"https://openalex.org/I76903346","display_name":"University of Coimbra","ror":"https://ror.org/04z8k9a98","country_code":"PT","type":"education","lineage":["https://openalex.org/I76903346"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"A. Araujo","raw_affiliation_strings":["Centre of Mathematics, Department of Mathematics, University of Coimbra, Coimbra, Portugal"],"affiliations":[{"raw_affiliation_string":"Centre of Mathematics, Department of Mathematics, University of Coimbra, Coimbra, Portugal","institution_ids":["https://openalex.org/I76903346"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5013058058"],"corresponding_institution_ids":["https://openalex.org/I76903346"],"apc_list":null,"apc_paid":null,"fwci":1.0337,"has_fulltext":false,"cited_by_count":20,"citation_normalized_percentile":{"value":0.77523413,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"29","issue":"4","first_page":"998","last_page":"1011"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10552","display_name":"Colorectal Cancer Screening and Detection","score":0.9973000288009644,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.9954000115394592,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9886000156402588,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/crypt","display_name":"Crypt","score":0.8039409518241882},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.6451002359390259},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.580132782459259},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.5589280128479004},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5019118785858154},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.49404123425483704},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.45996931195259094},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.43791458010673523},{"id":"https://openalex.org/keywords/discretization","display_name":"Discretization","score":0.4355565905570984},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.33803850412368774},{"id":"https://openalex.org/keywords/mathematical-analysis","display_name":"Mathematical analysis","score":0.08566415309906006}],"concepts":[{"id":"https://openalex.org/C66090201","wikidata":"https://www.wikidata.org/wiki/Q15995009","display_name":"Crypt","level":2,"score":0.8039409518241882},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6451002359390259},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.580132782459259},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.5589280128479004},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5019118785858154},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.49404123425483704},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.45996931195259094},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.43791458010673523},{"id":"https://openalex.org/C73000952","wikidata":"https://www.wikidata.org/wiki/Q17007827","display_name":"Discretization","level":2,"score":0.4355565905570984},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.33803850412368774},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.08566415309906006},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D015179","descriptor_name":"Colorectal Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016099","descriptor_name":"Endoscopy, Gastrointestinal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016099","descriptor_name":"Endoscopy, Gastrointestinal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016099","descriptor_name":"Endoscopy, Gastrointestinal","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058739","descriptor_name":"Aberrant Crypt Foci","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D058739","descriptor_name":"Aberrant Crypt Foci","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D058739","descriptor_name":"Aberrant Crypt Foci","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1109/tmi.2009.2036258","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmi.2009.2036258","pdf_url":null,"source":{"id":"https://openalex.org/S58069681","display_name":"IEEE Transactions on Medical Imaging","issn_l":"0278-0062","issn":["0278-0062","1558-254X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Medical Imaging","raw_type":"journal-article"},{"id":"pmid:19923042","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19923042","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on medical imaging","raw_type":null},{"id":"pmh:oai:estudogeral.sib.uc.pt:10316/11240","is_oa":false,"landing_page_url":"http://hdl.handle.net/10316/11240","pdf_url":null,"source":{"id":"https://openalex.org/S4306401208","display_name":"Estudo Geral (Universidade de Coimbra)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2802025818","host_organization_name":"Hospitais da Universidade de Coimbra","host_organization_lineage":["https://openalex.org/I2802025818"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"http://purl.org/coar/resource_type/c_816b"}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.46000000834465027,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":40,"referenced_works":["https://openalex.org/W1579559187","https://openalex.org/W1947630137","https://openalex.org/W1964562290","https://openalex.org/W1972308263","https://openalex.org/W1986019983","https://openalex.org/W1990691513","https://openalex.org/W1991113069","https://openalex.org/W1999244633","https://openalex.org/W2005873003","https://openalex.org/W2026356722","https://openalex.org/W2031372290","https://openalex.org/W2036831253","https://openalex.org/W2038495454","https://openalex.org/W2043103956","https://openalex.org/W2047330711","https://openalex.org/W2070014465","https://openalex.org/W2085763173","https://openalex.org/W2093834886","https://openalex.org/W2094994900","https://openalex.org/W2096796013","https://openalex.org/W2102558232","https://openalex.org/W2104095591","https://openalex.org/W2107559381","https://openalex.org/W2114487471","https://openalex.org/W2116040950","https://openalex.org/W2125967668","https://openalex.org/W2138655868","https://openalex.org/W2139971200","https://openalex.org/W2144133758","https://openalex.org/W2160276368","https://openalex.org/W2164194457","https://openalex.org/W2165734775","https://openalex.org/W2167460096","https://openalex.org/W2172029033","https://openalex.org/W2276115759","https://openalex.org/W2798817241","https://openalex.org/W2998023265","https://openalex.org/W4239619779","https://openalex.org/W6676091346","https://openalex.org/W6680787266"],"related_works":["https://openalex.org/W2013320174","https://openalex.org/W1992711930","https://openalex.org/W2113905655","https://openalex.org/W200423708","https://openalex.org/W2049303898","https://openalex.org/W2974141030","https://openalex.org/W293487057","https://openalex.org/W2317361310","https://openalex.org/W2046942502","https://openalex.org/W1522196789"],"abstract_inverted_index":{"The":[0,91],"aim":[1],"of":[2,57,103],"this":[3],"paper":[4],"is":[5,93],"to":[6,32,61,72,95],"introduce":[7],"a":[8],"variational":[9],"image":[10],"segmentation":[11,75],"method":[12],"for":[13,35,63],"assessing":[14],"the":[15,21,51,64,74,97,104],"aberrant":[16],"crypt":[17],"foci":[18],"(ACF)":[19],"in":[20,25,79,85],"human":[22],"colon":[23],"captured":[24],"vivo":[26],"by":[27,81,88],"endoscopy.":[28],"ACF":[29],"are":[30],"thought":[31],"be":[33],"precursors":[34],"colorectal":[36],"cancer,":[37],"and":[38,59,77,84,101],"therefore":[39],"their":[40,99],"early":[41],"detection":[42],"may":[43],"play":[44],"an":[45],"important":[46],"clinical":[47],"role.":[48],"We":[49,68],"enhance":[50],"active":[52],"contours":[53],"without":[54],"edges":[55],"model":[56],"Chan":[58],"Vese":[60],"account":[62],"ACF's":[65],"particular":[66],"structure.":[67],"employ":[69],"level":[70],"sets":[71],"represent":[73],"boundaries":[76],"discretize":[78],"space":[80],"finite":[82,89],"elements":[83],"(artificial)":[86],"time":[87],"differences.":[90],"approach":[92],"able":[94],"identify":[96],"ACF,":[98],"boundaries,":[100],"some":[102],"internal":[105],"crypts'":[106],"orifices.":[107]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":3}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
