{"id":"https://openalex.org/W4401507803","doi":"https://doi.org/10.1109/tmbmc.2024.3442083","title":"From Multiscale Biophysics to Digital Twins of Tissues and Organs: Future Opportunities for <i>in-silico</i> Pharmacology","display_name":"From Multiscale Biophysics to Digital Twins of Tissues and Organs: Future Opportunities for <i>in-silico</i> Pharmacology","publication_year":2024,"publication_date":"2024-08-12","ids":{"openalex":"https://openalex.org/W4401507803","doi":"https://doi.org/10.1109/tmbmc.2024.3442083"},"language":"en","primary_location":{"id":"doi:10.1109/tmbmc.2024.3442083","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmbmc.2024.3442083","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological, and Multi-Scale Communications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5084092008","display_name":"Michael Taynnan Barros","orcid":"https://orcid.org/0000-0002-9765-7660"},"institutions":[{"id":"https://openalex.org/I110002522","display_name":"University of Essex","ror":"https://ror.org/02nkf1q06","country_code":"GB","type":"education","lineage":["https://openalex.org/I110002522"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Michael Taynnan Barros","raw_affiliation_strings":["School of Computer Science and Electronic Engineering, University of Essex, Colchester, U.K","School of Computer Science and Electronic Engineering, University of Essex. Colchester, UK"],"raw_orcid":"https://orcid.org/0000-0002-9765-7660","affiliations":[{"raw_affiliation_string":"School of Computer Science and Electronic Engineering, University of Essex, Colchester, U.K","institution_ids":["https://openalex.org/I110002522"]},{"raw_affiliation_string":"School of Computer Science and Electronic Engineering, University of Essex. Colchester, UK","institution_ids":["https://openalex.org/I110002522"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062279764","display_name":"Michelangelo Paci","orcid":"https://orcid.org/0000-0003-0510-1444"},"institutions":[{"id":"https://openalex.org/I2801039369","display_name":"Marconi University","ror":"https://ror.org/00j0rk173","country_code":"IT","type":"education","lineage":["https://openalex.org/I2801039369"]},{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michelangelo Paci","raw_affiliation_strings":["Department of Electrical, Electronic, and Information Engineering &#x201C;Guglielmo Marconi&#x201D;, University of Bologna, Cesena, Italy"],"raw_orcid":"https://orcid.org/0000-0003-0510-1444","affiliations":[{"raw_affiliation_string":"Department of Electrical, Electronic, and Information Engineering &#x201C;Guglielmo Marconi&#x201D;, University of Bologna, Cesena, Italy","institution_ids":["https://openalex.org/I2801039369","https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056248865","display_name":"Aapo Tervonen","orcid":"https://orcid.org/0000-0002-2770-0563"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Aapo Tervonen","raw_affiliation_strings":["Bio Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland"],"raw_orcid":"https://orcid.org/0000-0002-2770-0563","affiliations":[{"raw_affiliation_string":"Bio Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091104856","display_name":"Elisa Passini","orcid":"https://orcid.org/0000-0003-0116-6347"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]},{"id":"https://openalex.org/I4210146410","display_name":"Science Oxford","ror":"https://ror.org/04j8yhy50","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I4210146410"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Elisa Passini","raw_affiliation_strings":["Department of Computer Science, University of Oxford, Oxford, U.K","Department of Computer Science, Oxford University, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Oxford, Oxford, U.K","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Computer Science, Oxford University, UK","institution_ids":["https://openalex.org/I40120149","https://openalex.org/I4210146410"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042739878","display_name":"Jussi T. Koivum\u00e4ki","orcid":"https://orcid.org/0000-0003-0638-2284"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jussi T. Koivum\u00e4ki","raw_affiliation_strings":["Tech Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland"],"raw_orcid":"https://orcid.org/0000-0003-0638-2284","affiliations":[{"raw_affiliation_string":"Tech Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050747402","display_name":"Jari Hyttinen","orcid":"https://orcid.org/0000-0003-1850-3055"},"institutions":[{"id":"https://openalex.org/I166825849","display_name":"Tampere University","ror":"https://ror.org/033003e23","country_code":"FI","type":"education","lineage":["https://openalex.org/I166825849"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Jari A. K. Hyttinen","raw_affiliation_strings":["Tech Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tech Unit, Faculty of Medicine and Health Technology, Tampere University, Tampere, Finland","institution_ids":["https://openalex.org/I166825849"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5039161334","display_name":"Kerstin Lenk","orcid":"https://orcid.org/0000-0002-8329-1127"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]},{"id":"https://openalex.org/I4210117258","display_name":"BioTechMed-Graz","ror":"https://ror.org/02jfbm483","country_code":"AT","type":"facility","lineage":["https://openalex.org/I4210117258"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Kerstin Lenk","raw_affiliation_strings":["Institute of Neural Engineering, Graz University of Technology and BioTechMed, Graz, Austria","Institute of Neural Engineering, Graz University of Technology and BioTechMed, Austria"],"raw_orcid":"https://orcid.org/0000-0002-8329-1127","affiliations":[{"raw_affiliation_string":"Institute of Neural Engineering, Graz University of Technology and BioTechMed, Graz, Austria","institution_ids":["https://openalex.org/I4210117258","https://openalex.org/I4092182"]},{"raw_affiliation_string":"Institute of Neural Engineering, Graz University of Technology and BioTechMed, Austria","institution_ids":["https://openalex.org/I4210117258","https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.279,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.87941244,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"10","issue":"4","first_page":"576","last_page":"594"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.949400007724762,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11190","display_name":"3D Printing in Biomedical Research","score":0.949400007724762,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.8602824211120605},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5028175711631775},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.45724937319755554},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3411678075790405},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.3312112092971802},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3304762840270996},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3140072226524353},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.13311776518821716}],"concepts":[{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.8602824211120605},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5028175711631775},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.45724937319755554},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3411678075790405},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.3312112092971802},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3304762840270996},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3140072226524353},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.13311776518821716},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tmbmc.2024.3442083","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmbmc.2024.3442083","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological, and Multi-Scale Communications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4341000633","display_name":null,"funder_award_id":"200101","funder_id":"https://openalex.org/F4320309883","funder_display_name":"Foundation for Cardiovascular Research"}],"funders":[{"id":"https://openalex.org/F4320309883","display_name":"Foundation for Cardiovascular Research","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":142,"referenced_works":["https://openalex.org/W28536675","https://openalex.org/W134894943","https://openalex.org/W202503705","https://openalex.org/W878990122","https://openalex.org/W1515138319","https://openalex.org/W1542853183","https://openalex.org/W1565842471","https://openalex.org/W1660719507","https://openalex.org/W1921868956","https://openalex.org/W1967857799","https://openalex.org/W1971128281","https://openalex.org/W1974565082","https://openalex.org/W1980773744","https://openalex.org/W1982950909","https://openalex.org/W1984336411","https://openalex.org/W1985940938","https://openalex.org/W1997218466","https://openalex.org/W2003251032","https://openalex.org/W2004631233","https://openalex.org/W2005752255","https://openalex.org/W2006999948","https://openalex.org/W2008643614","https://openalex.org/W2008743602","https://openalex.org/W2012260669","https://openalex.org/W2017946427","https://openalex.org/W2021682413","https://openalex.org/W2030409545","https://openalex.org/W2032267016","https://openalex.org/W2036874203","https://openalex.org/W2037331729","https://openalex.org/W2037425801","https://openalex.org/W2044017365","https://openalex.org/W2045376669","https://openalex.org/W2045935570","https://openalex.org/W2050117577","https://openalex.org/W2056700437","https://openalex.org/W2059040925","https://openalex.org/W2063381307","https://openalex.org/W2066129063","https://openalex.org/W2074527519","https://openalex.org/W2074621016","https://openalex.org/W2079089785","https://openalex.org/W2085949935","https://openalex.org/W2092258428","https://openalex.org/W2094102770","https://openalex.org/W2094382267","https://openalex.org/W2098355081","https://openalex.org/W2102015799","https://openalex.org/W2111020654","https://openalex.org/W2114240651","https://openalex.org/W2116621000","https://openalex.org/W2126725618","https://openalex.org/W2130582792","https://openalex.org/W2131215403","https://openalex.org/W2131414969","https://openalex.org/W2134175990","https://openalex.org/W2134716171","https://openalex.org/W2137761603","https://openalex.org/W2143610228","https://openalex.org/W2146831880","https://openalex.org/W2153797429","https://openalex.org/W2156565585","https://openalex.org/W2160674655","https://openalex.org/W2166457415","https://openalex.org/W2169600586","https://openalex.org/W2184606859","https://openalex.org/W2270421398","https://openalex.org/W2277316067","https://openalex.org/W2281364118","https://openalex.org/W2284582986","https://openalex.org/W2293899965","https://openalex.org/W2401497541","https://openalex.org/W2466065712","https://openalex.org/W2566006602","https://openalex.org/W2587305225","https://openalex.org/W2625590208","https://openalex.org/W2732149358","https://openalex.org/W2753759230","https://openalex.org/W2754002459","https://openalex.org/W2769265462","https://openalex.org/W2770197736","https://openalex.org/W2779362301","https://openalex.org/W2790008978","https://openalex.org/W2794027666","https://openalex.org/W2807891007","https://openalex.org/W2888118590","https://openalex.org/W2888825293","https://openalex.org/W2889435798","https://openalex.org/W2896861622","https://openalex.org/W2897858140","https://openalex.org/W2901928456","https://openalex.org/W2909543845","https://openalex.org/W2920163914","https://openalex.org/W2935962098","https://openalex.org/W2938930273","https://openalex.org/W2946285532","https://openalex.org/W2950664084","https://openalex.org/W2965723079","https://openalex.org/W2968045006","https://openalex.org/W2979444662","https://openalex.org/W2981556959","https://openalex.org/W2987229491","https://openalex.org/W2999365564","https://openalex.org/W3001768014","https://openalex.org/W3001831828","https://openalex.org/W3002370256","https://openalex.org/W3007808415","https://openalex.org/W3008033459","https://openalex.org/W3010152544","https://openalex.org/W3014887080","https://openalex.org/W3015902292","https://openalex.org/W3016802542","https://openalex.org/W3037716816","https://openalex.org/W3043631414","https://openalex.org/W3045881189","https://openalex.org/W3081007712","https://openalex.org/W3082443534","https://openalex.org/W3106188448","https://openalex.org/W3114472842","https://openalex.org/W3126023996","https://openalex.org/W3129678228","https://openalex.org/W3134647491","https://openalex.org/W3150558176","https://openalex.org/W3158145137","https://openalex.org/W3158586821","https://openalex.org/W3159528346","https://openalex.org/W3160046761","https://openalex.org/W3168038426","https://openalex.org/W3196492948","https://openalex.org/W3196581067","https://openalex.org/W3203093006","https://openalex.org/W3206860915","https://openalex.org/W4200147019","https://openalex.org/W4210294348","https://openalex.org/W4220813386","https://openalex.org/W4234546939","https://openalex.org/W4236609777","https://openalex.org/W4240430385","https://openalex.org/W4253271002","https://openalex.org/W4285390111","https://openalex.org/W4291115260","https://openalex.org/W4378802231"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2003194288","https://openalex.org/W2513589746","https://openalex.org/W2153919606","https://openalex.org/W2213189664","https://openalex.org/W2074002899","https://openalex.org/W2062254828","https://openalex.org/W4237480606","https://openalex.org/W2936968863","https://openalex.org/W2941821699"],"abstract_inverted_index":{"With":[0],"many":[1],"advancements":[2],"in":[3,4,8,35,64,137,138],"silico":[5,36,65,139],"multiscale":[6,72,102,135,174],"biology":[7],"recent":[9],"years,":[10],"the":[11,17,28,47,70,118,129,161,165,180,189],"paramount":[12],"challenge":[13],"is":[14],"to":[15,96,154,163],"translate":[16],"accumulated":[18],"knowledge":[19],"into":[20],"exciting":[21],"industry":[22,30],"partnerships":[23],"and":[24,51,78,85,101,123,131,170,176,182,195],"clinical":[25,169],"applications.":[26],"Historically,":[27],"pharmaceutical":[29,171],"has":[31,89,104],"worked":[32],"well":[33],"with":[34],"models":[37,55,153],"by":[38,146],"leveraging":[39],"their":[40,185],"prediction":[41,58,156],"capabilities":[42],"for":[43,56,69,82,167,184],"drug":[44],"testing.":[45],"However,":[46],"needed":[48],"higher":[49,52],"fidelity":[50],"resolution":[53],"of":[54,59,120,134,173,192],"efficient":[57],"pharmacological":[60],"phenomenon":[61],"dictates":[62],"that":[63],"approaches":[66],"must":[67],"account":[68],"verifiable":[71],"biophysical":[73,152],"phenomena,":[74],"as":[75,141],"a":[76,111,142,148],"spatial":[77],"temporal":[79],"dimension":[80],"variation":[81],"different":[83],"processes":[84],"models.":[86],"Our":[87],"paper":[88,178],"two":[90],"main":[91],"goals:":[92],"1)":[93],"To":[94,127],"clarify":[95],"what":[97],"extent":[98],"detailed":[99],"single-":[100],"modeling":[103],"been":[105],"accomplished":[106],"thus":[107],"far,":[108],"we":[109],"provide":[110],"review":[112],"on":[113,117],"this":[114],"topic":[115],"focusing":[116],"biophysics":[119,136],"epithelial,":[121],"cardiac,":[122],"brain":[124],"tissues;":[125],"2)":[126],"discuss":[128],"present":[130],"future":[132,193],"role":[133],"pharmacology":[140],"digital":[143],"twin":[144],"solution":[145],"defining":[147],"roadmap":[149],"from":[150],"simple":[151],"powerful":[155],"tools.":[157],"Digital":[158],"twins":[159],"have":[160],"potential":[162],"pave":[164],"way":[166],"extensive":[168],"usage":[172],"models,":[175],"our":[177],"shows":[179],"fundamentals":[181],"opportunities":[183],"accurate":[186],"development,":[187],"enabling":[188],"quantum":[190],"leaps":[191],"precise":[194],"personalized":[196],"medical":[197],"software.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":8}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
