{"id":"https://openalex.org/W4383200195","doi":"https://doi.org/10.1109/tmbmc.2023.3292321","title":"A Stochastic Biofilm Disruption Model Based on Quorum Sensing Mimickers","display_name":"A Stochastic Biofilm Disruption Model Based on Quorum Sensing Mimickers","publication_year":2023,"publication_date":"2023-07-05","ids":{"openalex":"https://openalex.org/W4383200195","doi":"https://doi.org/10.1109/tmbmc.2023.3292321"},"language":"en","primary_location":{"id":"doi:10.1109/tmbmc.2023.3292321","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmbmc.2023.3292321","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological and Multi-Scale Communications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001430420","display_name":"Fatih G\u00fcle\u00e7","orcid":"https://orcid.org/0000-0003-1031-6108"},"institutions":[{"id":"https://openalex.org/I192455969","display_name":"York University","ror":"https://ror.org/05fq50484","country_code":"CA","type":"education","lineage":["https://openalex.org/I192455969"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Fatih Gulec","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, York University, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, York University, Toronto, Canada","institution_ids":["https://openalex.org/I192455969"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046532019","display_name":"Andrew W. Eckford","orcid":"https://orcid.org/0000-0002-9808-1229"},"institutions":[{"id":"https://openalex.org/I192455969","display_name":"York University","ror":"https://ror.org/05fq50484","country_code":"CA","type":"education","lineage":["https://openalex.org/I192455969"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Andrew W. Eckford","raw_affiliation_strings":["Department of Electrical Engineering and Computer Science, York University, Toronto, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering and Computer Science, York University, Toronto, Canada","institution_ids":["https://openalex.org/I192455969"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5001430420"],"corresponding_institution_ids":["https://openalex.org/I192455969"],"apc_list":null,"apc_paid":null,"fwci":1.1133,"has_fulltext":false,"cited_by_count":7,"citation_normalized_percentile":{"value":0.77850609,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":97},"biblio":{"volume":"9","issue":"3","first_page":"346","last_page":"350"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.9986000061035156,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":0.9914000034332275,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12561","display_name":"bioluminescence and chemiluminescence research","score":0.9768999814987183,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biofilm","display_name":"Biofilm","score":0.9401117563247681},{"id":"https://openalex.org/keywords/quorum-sensing","display_name":"Quorum sensing","score":0.8676689863204956},{"id":"https://openalex.org/keywords/pseudomonas-aeruginosa","display_name":"Pseudomonas aeruginosa","score":0.6402029991149902},{"id":"https://openalex.org/keywords/randomness","display_name":"Randomness","score":0.5636258721351624},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4660172760486603},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3636934757232666},{"id":"https://openalex.org/keywords/biochemical-engineering","display_name":"Biochemical engineering","score":0.34779471158981323},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.34680482745170593},{"id":"https://openalex.org/keywords/microbiology","display_name":"Microbiology","score":0.3411470055580139},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.26818516850471497},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20462876558303833},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.13127076625823975},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.07597693800926208},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06145504117012024}],"concepts":[{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.9401117563247681},{"id":"https://openalex.org/C118687296","wikidata":"https://www.wikidata.org/wiki/Q905754","display_name":"Quorum sensing","level":4,"score":0.8676689863204956},{"id":"https://openalex.org/C2777637488","wikidata":"https://www.wikidata.org/wiki/Q31856","display_name":"Pseudomonas aeruginosa","level":3,"score":0.6402029991149902},{"id":"https://openalex.org/C125112378","wikidata":"https://www.wikidata.org/wiki/Q176640","display_name":"Randomness","level":2,"score":0.5636258721351624},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4660172760486603},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3636934757232666},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.34779471158981323},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.34680482745170593},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3411470055580139},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.26818516850471497},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20462876558303833},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.13127076625823975},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.07597693800926208},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06145504117012024},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tmbmc.2023.3292321","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmbmc.2023.3292321","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological and Multi-Scale Communications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/6","score":0.5199999809265137,"display_name":"Clean water and sanitation"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1989420467","https://openalex.org/W2024995147","https://openalex.org/W2042321087","https://openalex.org/W2092299068","https://openalex.org/W2099529407","https://openalex.org/W2131227051","https://openalex.org/W2155418451","https://openalex.org/W2167154952","https://openalex.org/W2214040477","https://openalex.org/W2229398321","https://openalex.org/W2508474324","https://openalex.org/W2511941815","https://openalex.org/W2520975117","https://openalex.org/W2891978290","https://openalex.org/W2959741523","https://openalex.org/W2998805550","https://openalex.org/W4387869989"],"related_works":["https://openalex.org/W2381115305","https://openalex.org/W4210894823","https://openalex.org/W2752831188","https://openalex.org/W2058965595","https://openalex.org/W2087735873","https://openalex.org/W3129105113","https://openalex.org/W3029497197","https://openalex.org/W2136376928","https://openalex.org/W2373514832","https://openalex.org/W1486285556"],"abstract_inverted_index":{"Quorum":[0],"sensing":[1],"(QS)":[2],"mimickers":[3,38],"can":[4],"be":[5],"used":[6],"as":[7,101],"an":[8,111],"effective":[9],"tool":[10],"to":[11,52,76,117,128],"disrupt":[12],"biofilms":[13],"which":[14,151],"consist":[15],"of":[16,36,91,120,147],"communicating":[17],"bacteria":[18],"and":[19,61,95,149],"extracellular":[20],"polymeric":[21],"substances":[22],"(EPS).":[23],"In":[24,67,126],"this":[25,78],"paper,":[26],"a":[27,69,153],"stochastic":[28,71],"biofilm":[29,59,94,157],"disruption":[30,63,97,146,158],"model":[31,53,82],"based":[32],"on":[33],"the":[34,54,58,86,102,118,121,124,129,133,145],"usage":[35],"QS":[37,65,103,130,160],"is":[39,50,74,83,110],"proposed.":[40],"A":[41],"chemical":[42],"reaction":[43],"network":[44],"(CRN)":[45],"involving":[46],"four":[47],"different":[48],"states":[49],"employed":[51],"biological":[55],"processes":[56],"during":[57],"formation":[60],"its":[62,96],"via":[64],"mimickers.":[66,161],"addition,":[68],"state-based":[70],"simulation":[72],"algorithm":[73],"proposed":[75,81],"simulate":[77],"CRN.":[79,125],"The":[80],"validated":[84],"by":[85,98],"in":[87,113,123],"vitro":[88],"experimental":[89],"results":[90,106],"Pseudomonas":[92],"aeruginosa":[93],"rosmarinic":[99],"acid":[100],"mimicker.":[104],"Our":[105],"show":[107],"that":[108,137],"there":[109,138],"uncertainty":[112],"state":[114],"transitions":[115],"due":[116],"effect":[119],"randomness":[122],"addition":[127],"activation":[131],"threshold,":[132],"presented":[134],"work":[135],"demonstrates":[136],"are":[139],"underlying":[140],"two":[141],"more":[142],"thresholds":[143],"for":[144,156],"EPS":[148],"bacteria,":[150],"provides":[152],"realistic":[154],"modeling":[155],"with":[159]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
