{"id":"https://openalex.org/W2993556400","doi":"https://doi.org/10.1109/tmbmc.2019.2957783","title":"A Molecular Communication Testbed Based on Proton Pumping Bacteria: Methods and Data","display_name":"A Molecular Communication Testbed Based on Proton Pumping Bacteria: Methods and Data","publication_year":2019,"publication_date":"2019-10-01","ids":{"openalex":"https://openalex.org/W2993556400","doi":"https://doi.org/10.1109/tmbmc.2019.2957783","mag":"2993556400"},"language":"en","primary_location":{"id":"doi:10.1109/tmbmc.2019.2957783","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmbmc.2019.2957783","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological and Multi-Scale Communications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5088261144","display_name":"Laura Grebenstein","orcid":null},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Laura Grebenstein","raw_affiliation_strings":["Institute for Microbiology, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091483516","display_name":"Jens Kirchner","orcid":"https://orcid.org/0000-0002-8623-9551"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens Kirchner","raw_affiliation_strings":["Institute for Electronics Engineering, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-8623-9551","affiliations":[{"raw_affiliation_string":"Institute for Electronics Engineering, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062351885","display_name":"Wayan Wicke","orcid":"https://orcid.org/0000-0002-2717-4663"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Wayan Wicke","raw_affiliation_strings":["Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-2717-4663","affiliations":[{"raw_affiliation_string":"Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060584713","display_name":"Arman Ahmadzadeh","orcid":"https://orcid.org/0000-0003-2742-4025"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Arman Ahmadzadeh","raw_affiliation_strings":["Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2742-4025","affiliations":[{"raw_affiliation_string":"Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087843323","display_name":"Vahid Jamali","orcid":"https://orcid.org/0000-0003-3920-7415"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Vahid Jamali","raw_affiliation_strings":["Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3920-7415","affiliations":[{"raw_affiliation_string":"Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063161060","display_name":"Georg Fischer","orcid":"https://orcid.org/0000-0002-4033-2005"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Georg Fischer","raw_affiliation_strings":["Institute for Electronics Engineering, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0002-4033-2005","affiliations":[{"raw_affiliation_string":"Institute for Electronics Engineering, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070760948","display_name":"Robert Weigel","orcid":"https://orcid.org/0000-0002-3131-1800"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Robert Weigel","raw_affiliation_strings":["Institute for Electronics Engineering, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Electronics Engineering, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048065270","display_name":"Andreas Burkovski","orcid":"https://orcid.org/0000-0003-1896-4521"},"institutions":[{"id":"https://openalex.org/I181369854","display_name":"Friedrich-Alexander-Universit\u00e4t Erlangen-N\u00fcrnberg","ror":"https://ror.org/00f7hpc57","country_code":"DE","type":"education","lineage":["https://openalex.org/I181369854"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Burkovski","raw_affiliation_strings":["Institute for Microbiology, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-1896-4521","affiliations":[{"raw_affiliation_string":"Institute for Microbiology, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":["https://openalex.org/I181369854"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5033990377","display_name":"Robert Schober","orcid":"https://orcid.org/0000-0002-6420-4884"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Robert Schober","raw_affiliation_strings":["Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Digital Communications, Friedrich-Alexander-Universit&#x00E4;t Erlangen-N&#x00FC;rnberg, Erlangen, Germany","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.1294,"has_fulltext":false,"cited_by_count":46,"citation_normalized_percentile":{"value":0.86989547,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"5","issue":"1","first_page":"56","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13052","display_name":"Molecular Communication and Nanonetworks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12236","display_name":"Photoreceptor and optogenetics research","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9850999712944031,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/testbed","display_name":"Testbed","score":0.9630769491195679},{"id":"https://openalex.org/keywords/molecular-communication","display_name":"Molecular communication","score":0.7795664072036743},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5705112814903259},{"id":"https://openalex.org/keywords/transmitter","display_name":"Transmitter","score":0.512311577796936},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.4912092089653015},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.48130738735198975},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.43354955315589905},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.4165894389152527},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3418523669242859},{"id":"https://openalex.org/keywords/channel","display_name":"Channel (broadcasting)","score":0.32794129848480225},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2820899486541748},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23737630248069763},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.18640178442001343},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08769816160202026},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.08497917652130127}],"concepts":[{"id":"https://openalex.org/C31395832","wikidata":"https://www.wikidata.org/wiki/Q1318674","display_name":"Testbed","level":2,"score":0.9630769491195679},{"id":"https://openalex.org/C2779767902","wikidata":"https://www.wikidata.org/wiki/Q17037278","display_name":"Molecular communication","level":4,"score":0.7795664072036743},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5705112814903259},{"id":"https://openalex.org/C47798520","wikidata":"https://www.wikidata.org/wiki/Q190157","display_name":"Transmitter","level":3,"score":0.512311577796936},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.4912092089653015},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.48130738735198975},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.43354955315589905},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.4165894389152527},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3418523669242859},{"id":"https://openalex.org/C127162648","wikidata":"https://www.wikidata.org/wiki/Q16858953","display_name":"Channel (broadcasting)","level":2,"score":0.32794129848480225},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2820899486541748},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23737630248069763},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.18640178442001343},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08769816160202026},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.08497917652130127},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tmbmc.2019.2957783","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tmbmc.2019.2957783","pdf_url":null,"source":{"id":"https://openalex.org/S2490853239","display_name":"IEEE Transactions on Molecular Biological and Multi-Scale Communications","issn_l":"2332-7804","issn":["2332-7804","2372-2061"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Molecular, Biological and Multi-Scale Communications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8541342527","display_name":null,"funder_award_id":"SCHO 831/7-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320323214","display_name":"Staedtler Stiftung","ror":"https://ror.org/04088fk89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W37423325","https://openalex.org/W1651537430","https://openalex.org/W1886915855","https://openalex.org/W1973151289","https://openalex.org/W1975818668","https://openalex.org/W2016684042","https://openalex.org/W2017956110","https://openalex.org/W2031542240","https://openalex.org/W2036444772","https://openalex.org/W2078159738","https://openalex.org/W2091407472","https://openalex.org/W2114124738","https://openalex.org/W2124745060","https://openalex.org/W2146752617","https://openalex.org/W2152434411","https://openalex.org/W2153572376","https://openalex.org/W2167495642","https://openalex.org/W2168002711","https://openalex.org/W2173591323","https://openalex.org/W2176632612","https://openalex.org/W2260681306","https://openalex.org/W2470656632","https://openalex.org/W2516214888","https://openalex.org/W2559574135","https://openalex.org/W2571453491","https://openalex.org/W2620992716","https://openalex.org/W2766189988","https://openalex.org/W2782623722","https://openalex.org/W2886204496","https://openalex.org/W2894076775","https://openalex.org/W2896021429","https://openalex.org/W2900493748","https://openalex.org/W2908851930","https://openalex.org/W2921080240","https://openalex.org/W2923359676","https://openalex.org/W2944268584","https://openalex.org/W2949673699","https://openalex.org/W2963006876","https://openalex.org/W2963475722","https://openalex.org/W3042674204","https://openalex.org/W3043649291","https://openalex.org/W3100991707","https://openalex.org/W6720509583","https://openalex.org/W6760600386"],"related_works":["https://openalex.org/W4386212476","https://openalex.org/W2780302907","https://openalex.org/W2725701533","https://openalex.org/W2150853451","https://openalex.org/W2997185736","https://openalex.org/W4212960144","https://openalex.org/W2338475247","https://openalex.org/W1577569365","https://openalex.org/W4214831766","https://openalex.org/W2950822845"],"abstract_inverted_index":{"This":[0,67],"paper":[1],"presents":[2],"a":[3,7,16,80],"detailed":[4],"description":[5],"of":[6,18,72,93,107,126,145],"recent":[8],"biological":[9],"molecular":[10],"communication":[11,146],"(MC)":[12],"testbed":[13,26,109],"and":[14,110,140],"provides":[15],"set":[17,135],"experimental":[19,143],"measurement":[20,127],"data.":[21],"In":[22],"particular,":[23],"the":[24,37,56,61,65,69,73,84,91,101,105,112,115,131,142,150],"MC":[25,94,151],"is":[27,136],"realized":[28],"using":[29],"Escherichia":[30],"coli":[31],"(E.":[32],"coli)":[33],"bacteria":[34,54],"that":[35],"express":[36],"light-driven":[38],"proton":[39],"pump":[40],"gloeorhodopsin":[41],"(GR)":[42],"from":[43],"Gloeobacter":[44],"violaceus":[45],"(G.":[46],"violaceus).":[47],"Upon":[48],"an":[49],"external":[50],"light":[51],"stimulus,":[52],"these":[53],"(as":[55,60,83],"transmitter)":[57],"export":[58],"protons":[59],"signaling":[62],"molecules)":[63],"into":[64],"channel.":[66],"changes":[68],"pH":[70,81],"level":[71],"environment,":[74],"which":[75],"can":[76],"be":[77],"detected":[78],"with":[79,130],"sensor":[82],"receiver).":[85],"To":[86],"facilitate":[87,139],"future":[88],"advancement":[89],"in":[90,96],"experimentation":[92],"systems,":[95],"this":[97],"paper,":[98],"we":[99,122],"explain":[100],"methodology":[102],"used":[103],"for":[104],"development":[106],"our":[108],"discuss":[111],"reasoning":[113],"behind":[114],"choices":[116],"made":[117],"throughout":[118],"its":[119],"evolution.":[120],"Moreover,":[121],"provide":[123],"different":[124],"categories":[125],"data":[128,134],"obtained":[129],"testbed.":[132],"The":[133],"expected":[137],"to":[138],"promote":[141],"evaluation":[144],"schemes":[147],"developed":[148],"by":[149],"community.":[152]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":4}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
