{"id":"https://openalex.org/W4403122920","doi":"https://doi.org/10.1109/tkde.2024.3471508","title":"Learning to Denoise Biomedical Knowledge Graph for Robust Molecular Interaction Prediction","display_name":"Learning to Denoise Biomedical Knowledge Graph for Robust Molecular Interaction Prediction","publication_year":2024,"publication_date":"2024-10-04","ids":{"openalex":"https://openalex.org/W4403122920","doi":"https://doi.org/10.1109/tkde.2024.3471508"},"language":"en","primary_location":{"id":"doi:10.1109/tkde.2024.3471508","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2024.3471508","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057420442","display_name":"Tengfei Ma","orcid":"https://orcid.org/0000-0002-1560-2261"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Tengfei Ma","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","College of Computer Science, Xiangtan University, China","Tencent AI Lab, Shenzhen, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China"],"raw_orcid":"https://orcid.org/0000-0002-1560-2261","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5107932029","display_name":"Yujie Chen","orcid":"https://orcid.org/0009-0006-4545-7313"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Yujie Chen","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","Tencent AI Lab, Shenzhen, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","College of Computer Science, Xiangtan University, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114832471","display_name":"Tao Wen","orcid":"https://orcid.org/0009-0007-2407-4871"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Wen Tao","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","Tencent AI Lab, Shenzhen, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","College of Computer Science, Xiangtan University, China"],"raw_orcid":"https://orcid.org/0009-0007-2407-4871","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102536631","display_name":"Dashun Zheng","orcid":"https://orcid.org/0009-0005-7878-978X"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I24407930","display_name":"Hunan University of Science and Engineering","ror":"https://ror.org/04ymz0q33","country_code":"CN","type":"education","lineage":["https://openalex.org/I24407930"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Dashun Zheng","raw_affiliation_strings":["Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","Tencent AI Lab, Shenzhen, China","the College of Computer Science and Electronic Engineering, Hunan University, China","College of Computer Science, Xiangtan University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"the College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I24407930"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027410770","display_name":"Xuan Lin","orcid":"https://orcid.org/0000-0001-7216-1821"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I24407930","display_name":"Hunan University of Science and Engineering","ror":"https://ror.org/04ymz0q33","country_code":"CN","type":"education","lineage":["https://openalex.org/I24407930"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Xuan Lin","raw_affiliation_strings":["College of Computer Science, Xiangtan University, Xiangtan, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","the College of Computer Science and Electronic Engineering, Hunan University, China","Tencent AI Lab, Shenzhen, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China"],"raw_orcid":"https://orcid.org/0000-0001-7216-1821","affiliations":[{"raw_affiliation_string":"College of Computer Science, Xiangtan University, Xiangtan, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"the College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I24407930"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100333835","display_name":"Patrick Cheong\u2010Iao Pang","orcid":"https://orcid.org/0000-0002-8820-5443"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I24407930","display_name":"Hunan University of Science and Engineering","ror":"https://ror.org/04ymz0q33","country_code":"CN","type":"education","lineage":["https://openalex.org/I24407930"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Patrick Cheong-Iao Pang","raw_affiliation_strings":["Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","Tencent AI Lab, Shenzhen, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","the College of Computer Science and Electronic Engineering, Hunan University, China","College of Computer Science, Xiangtan University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"the College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I24407930"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100726685","display_name":"Yiping Liu","orcid":"https://orcid.org/0000-0001-7340-2551"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Yiping Liu","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","College of Computer Science, Xiangtan University, China","Tencent AI Lab, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0001-7340-2551","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100713692","display_name":"Yijun Wang","orcid":"https://orcid.org/0000-0002-3372-8167"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Yijun Wang","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","Tencent AI Lab, Shenzhen, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","College of Computer Science, Xiangtan University, China"],"raw_orcid":"https://orcid.org/0000-0002-3372-8167","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088191810","display_name":"Longyue Wang","orcid":"https://orcid.org/0000-0002-9062-6183"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I24407930","display_name":"Hunan University of Science and Engineering","ror":"https://ror.org/04ymz0q33","country_code":"CN","type":"education","lineage":["https://openalex.org/I24407930"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Longyue Wang","raw_affiliation_strings":["Tencent AI Lab, Shenzhen, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","the College of Computer Science and Electronic Engineering, Hunan University, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","College of Computer Science, Xiangtan University, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"the College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I24407930"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034581482","display_name":"Bosheng Song","orcid":"https://orcid.org/0000-0002-1479-5399"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Bosheng Song","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","College of Computer Science, Xiangtan University, China","Tencent AI Lab, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-1479-5399","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027286013","display_name":"Xiangxiang Zeng","orcid":"https://orcid.org/0000-0003-1081-7658"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Xiangxiang Zeng","raw_affiliation_strings":["College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","Tencent AI Lab, Shenzhen, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","College of Computer Science, Xiangtan University, China"],"raw_orcid":"https://orcid.org/0000-0003-1081-7658","affiliations":[{"raw_affiliation_string":"College of Computer Science and Electronic Engineering, Hunan University, Changsha, China","institution_ids":["https://openalex.org/I16609230"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036357902","display_name":"Philip S. Yu","orcid":"https://orcid.org/0000-0002-3491-5968"},"institutions":[{"id":"https://openalex.org/I16609230","display_name":"Hunan University","ror":"https://ror.org/05htk5m33","country_code":"CN","type":"education","lineage":["https://openalex.org/I16609230"]},{"id":"https://openalex.org/I2250653659","display_name":"Tencent (China)","ror":"https://ror.org/00hhjss72","country_code":"CN","type":"company","lineage":["https://openalex.org/I2250653659"]},{"id":"https://openalex.org/I24407930","display_name":"Hunan University of Science and Engineering","ror":"https://ror.org/04ymz0q33","country_code":"CN","type":"education","lineage":["https://openalex.org/I24407930"]},{"id":"https://openalex.org/I39422238","display_name":"University of Illinois Chicago","ror":"https://ror.org/02mpq6x41","country_code":"US","type":"education","lineage":["https://openalex.org/I39422238"]},{"id":"https://openalex.org/I4610292","display_name":"Xiangtan University","ror":"https://ror.org/00xsfaz62","country_code":"CN","type":"education","lineage":["https://openalex.org/I4610292"]},{"id":"https://openalex.org/I49835588","display_name":"Macao Polytechnic University","ror":"https://ror.org/02sf5td35","country_code":"MO","type":"education","lineage":["https://openalex.org/I49835588"]}],"countries":["CN","MO","US"],"is_corresponding":false,"raw_author_name":"Philip S. Yu","raw_affiliation_strings":["Department of Computer Science, University of Illinois at Chicago, Chicago, IL, USA","Tencent AI Lab, Shenzhen, China","College of Computer Science, Xiangtan University, China","Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","the College of Computer Science and Electronic Engineering, Hunan University, China","Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA"],"raw_orcid":"https://orcid.org/0000-0002-3491-5968","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL, USA","institution_ids":["https://openalex.org/I39422238"]},{"raw_affiliation_string":"Tencent AI Lab, Shenzhen, China","institution_ids":["https://openalex.org/I2250653659"]},{"raw_affiliation_string":"College of Computer Science, Xiangtan University, China","institution_ids":["https://openalex.org/I4610292"]},{"raw_affiliation_string":"Faculty of Applied Sciences, Macao Polytechnic University, Macao, China","institution_ids":["https://openalex.org/I49835588"]},{"raw_affiliation_string":"the College of Computer Science and Electronic Engineering, Hunan University, China","institution_ids":["https://openalex.org/I16609230","https://openalex.org/I24407930"]},{"raw_affiliation_string":"Department of Computer Science, University of Illinois at Chicago, Chicago, IL 60607-7053 USA","institution_ids":["https://openalex.org/I39422238"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":6.1528,"has_fulltext":false,"cited_by_count":24,"citation_normalized_percentile":{"value":0.97169482,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"36","issue":"12","first_page":"8682","last_page":"8694"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9302999973297119,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7744504809379578},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5926877856254578},{"id":"https://openalex.org/keywords/knowledge-graph","display_name":"Knowledge graph","score":0.5398544073104858},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.46301695704460144},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.453213632106781},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.33379435539245605},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23194876313209534}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7744504809379578},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5926877856254578},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.5398544073104858},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.46301695704460144},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.453213632106781},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33379435539245605},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23194876313209534}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tkde.2024.3471508","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2024.3471508","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1826349908","display_name":null,"funder_award_id":"2022JJ20016","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G1835682112","display_name":null,"funder_award_id":"62106073","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G217426881","display_name":null,"funder_award_id":"2023JJ40178","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G268992786","display_name":null,"funder_award_id":"U22A2037","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3090105490","display_name":null,"funder_award_id":"62272151","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4430803433","display_name":"\u52a8\u6001\u7ed3\u6784\u819c\u7cfb\u7edf\u53ca\u5e94\u7528\u7814\u7a76","funder_award_id":"61972138","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5477186794","display_name":null,"funder_award_id":"62122025","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5493600524","display_name":null,"funder_award_id":"62206089","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6197502279","display_name":null,"funder_award_id":"62432011","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6446245973","display_name":null,"funder_award_id":"62250028","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6983519186","display_name":null,"funder_award_id":"2024JJ4015","funder_id":"https://openalex.org/F4320322843","funder_display_name":"Natural Science Foundation of\u00a0Hunan Province"},{"id":"https://openalex.org/G771689064","display_name":null,"funder_award_id":"62450002","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8882514419","display_name":null,"funder_award_id":"62202413","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8914552600","display_name":null,"funder_award_id":"62425204","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322843","display_name":"Natural Science Foundation of\u00a0Hunan Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W1522301498","https://openalex.org/W1533230146","https://openalex.org/W1533861849","https://openalex.org/W2119002393","https://openalex.org/W2127795553","https://openalex.org/W2547875792","https://openalex.org/W2604314403","https://openalex.org/W2753953057","https://openalex.org/W2757431232","https://openalex.org/W2767891136","https://openalex.org/W2786016794","https://openalex.org/W2791560836","https://openalex.org/W2905499052","https://openalex.org/W2949434543","https://openalex.org/W2952522777","https://openalex.org/W2963420948","https://openalex.org/W2964015378","https://openalex.org/W2966349618","https://openalex.org/W2966787092","https://openalex.org/W2995738274","https://openalex.org/W3011720102","https://openalex.org/W3023891225","https://openalex.org/W3034239155","https://openalex.org/W3035011799","https://openalex.org/W3035237749","https://openalex.org/W3089843526","https://openalex.org/W3092790415","https://openalex.org/W3139253280","https://openalex.org/W3153496855","https://openalex.org/W3217681006","https://openalex.org/W4221166370","https://openalex.org/W4223969322","https://openalex.org/W4225412853","https://openalex.org/W4284688665","https://openalex.org/W4285138922","https://openalex.org/W4285605599","https://openalex.org/W4286373989","https://openalex.org/W4289598805","https://openalex.org/W4296771270","https://openalex.org/W4297808394","https://openalex.org/W4310945327","https://openalex.org/W4322749263","https://openalex.org/W4327668311","https://openalex.org/W4380136659","https://openalex.org/W4380303532","https://openalex.org/W4384641439","https://openalex.org/W4385076068","https://openalex.org/W4385212602","https://openalex.org/W4385567920","https://openalex.org/W4387559766","https://openalex.org/W4388191982","https://openalex.org/W4393147681","https://openalex.org/W4400111732","https://openalex.org/W6631190155","https://openalex.org/W6631943919","https://openalex.org/W6631964550","https://openalex.org/W6678830454","https://openalex.org/W6726873649","https://openalex.org/W6729448088","https://openalex.org/W6758075616","https://openalex.org/W6773885729","https://openalex.org/W6780093097","https://openalex.org/W6844194202","https://openalex.org/W6857465093"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W3046775127","https://openalex.org/W3107602296","https://openalex.org/W4394896187","https://openalex.org/W3170094116","https://openalex.org/W4386462264","https://openalex.org/W4364306694","https://openalex.org/W4312192474","https://openalex.org/W2033914206"],"abstract_inverted_index":{"Molecular":[0],"interaction":[1,16,20,105],"prediction":[2,35,80,186],"plays":[3],"a":[4,120,124],"crucial":[5],"role":[6],"in":[7,25,119,182,195],"forecasting":[8],"unknown":[9],"interactions":[10,198],"between":[11,157],"molecules,":[12],"such":[13],"as":[14],"drug-target":[15],"(DTI)":[17],"and":[18,31,46,69,142,160,184,191],"drug-drug":[19],"(DDI),":[21],"which":[22],"are":[23],"essential":[24],"the":[26,43,64,76,109,133,136,149,154,189],"field":[27],"of":[28,49,66,78,112,135,193],"drug":[29],"discovery":[30],"therapeutics.":[32],"Although":[33],"previous":[34],"methods":[36],"have":[37,55],"yielded":[38],"promising":[39],"results":[40,172],"by":[41,115,145],"leveraging":[42],"rich":[44],"semantics":[45,144,166],"topological":[47],"structure":[48,111,159],"biomedical":[50],"knowledge":[51],"graphs":[52],"(KGs),":[53],"they":[54],"primarily":[56],"focused":[57],"on":[58,173],"enhancing":[59],"predictive":[60],"performance":[61],"without":[62],"addressing":[63],"presence":[65],"inevitable":[67],"noise":[68],"inconsistent":[70],"semantics.":[71],"This":[72],"limitation":[73],"has":[74],"hindered":[75],"advancement":[77],"KG-based":[79],"methods.":[81],"To":[82,131],"address":[83],"this":[84],"limitation,":[85],"we":[86],"propose":[87],"BioKDN":[88,107,139,163,178,194],"(<bold":[89],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[90,93,97,100],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">Bio</b>medical":[91],"<bold":[92,96,99],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">K</b>nowledge":[94],"Graph":[95],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">D</b>enoising":[98],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">N</b>etwork)":[101],"for":[102,127],"robust":[103,143],"molecular":[104],"prediction.":[106],"refines":[108],"reliable":[110,158],"local":[113],"subgraphs":[114],"denoising":[116,196],"noisy":[117],"links":[118],"learnable":[121],"manner,":[122],"providing":[123],"general":[125],"module":[126],"extracting":[128],"task-relevant":[129],"interactions.":[130],"enhance":[132],"reliability":[134],"refined":[137],"structure,":[138],"maintains":[140],"consistent":[141],"smoothing":[146],"relations":[147],"around":[148],"target":[150],"interaction.":[151],"By":[152],"maximizing":[153],"mutual":[155],"information":[156],"smoothed":[161],"relations,":[162],"emphasizes":[164],"informative":[165],"to":[167],"enable":[168],"precise":[169],"predictions.":[170],"Experimental":[171],"real-world":[174],"datasets":[175],"show":[176],"that":[177],"surpasses":[179],"state-of-the-art":[180],"models":[181],"DTI":[183],"DDI":[185],"tasks,":[187],"confirming":[188],"effectiveness":[190],"robustness":[192],"unreliable":[197],"within":[199],"contaminated":[200],"KGs.":[201]},"counts_by_year":[{"year":2026,"cited_by_count":9},{"year":2025,"cited_by_count":14},{"year":2024,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
