{"id":"https://openalex.org/W4401386972","doi":"https://doi.org/10.1109/tkde.2024.3437775","title":"Enhancing Precision Drug Recommendations via In-Depth Exploration of Motif Relationships","display_name":"Enhancing Precision Drug Recommendations via In-Depth Exploration of Motif Relationships","publication_year":2024,"publication_date":"2024-08-07","ids":{"openalex":"https://openalex.org/W4401386972","doi":"https://doi.org/10.1109/tkde.2024.3437775"},"language":"en","primary_location":{"id":"doi:10.1109/tkde.2024.3437775","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2024.3437775","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5051434500","display_name":"Chuang Zhao","orcid":"https://orcid.org/0000-0001-6220-0540"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Chuang Zhao","raw_affiliation_strings":["Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":"https://orcid.org/0000-0001-6220-0540","affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017692278","display_name":"Hongke Zhao","orcid":"https://orcid.org/0000-0003-3099-4803"},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongke Zhao","raw_affiliation_strings":["College of Management and Economics, Laboratory of Computation and Analytics of Complex Management Systems (CACMS), Tianjin University, Tianjin, China"],"raw_orcid":"https://orcid.org/0000-0003-3099-4803","affiliations":[{"raw_affiliation_string":"College of Management and Economics, Laboratory of Computation and Analytics of Complex Management Systems (CACMS), Tianjin University, Tianjin, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011384237","display_name":"Xiaofang Zhou","orcid":"https://orcid.org/0000-0001-6343-1455"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Xiaofang Zhou","raw_affiliation_strings":["Department of Computer Science and Engineering, The Hong Kong University of Science and Technology, Hong Kong"],"raw_orcid":"https://orcid.org/0000-0001-6343-1455","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, The Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100427643","display_name":"Xiaomeng Li","orcid":"https://orcid.org/0000-0003-1105-8083"},"institutions":[{"id":"https://openalex.org/I200769079","display_name":"Hong Kong University of Science and Technology","ror":"https://ror.org/00q4vv597","country_code":"HK","type":"education","lineage":["https://openalex.org/I200769079"]},{"id":"https://openalex.org/I4210096887","display_name":"HKUST Shenzhen Research Institute","ror":"https://ror.org/00sz56h79","country_code":"CN","type":"facility","lineage":["https://openalex.org/I200769079","https://openalex.org/I20231570","https://openalex.org/I4210096887","https://openalex.org/I4210147811"]},{"id":"https://openalex.org/I4210159029","display_name":"Guangzhou HKUST Fok Ying Tung Research Institute","ror":"https://ror.org/05cvbj479","country_code":"CN","type":"facility","lineage":["https://openalex.org/I200769079","https://openalex.org/I4210159029"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Xiaomeng Li","raw_affiliation_strings":["Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong","Guangzhou HKUST Fok Ying Tung Research Institute, Guangzhou, China","HKUST Shenzhen-Hong Kong Collaborative Innovation Research Institute, Futian, China"],"raw_orcid":"https://orcid.org/0000-0003-1105-8083","affiliations":[{"raw_affiliation_string":"Department of Electronic and Computer Engineering, The Hong Kong University of Science and Technology, Hong Kong","institution_ids":["https://openalex.org/I200769079"]},{"raw_affiliation_string":"Guangzhou HKUST Fok Ying Tung Research Institute, Guangzhou, China","institution_ids":["https://openalex.org/I4210159029","https://openalex.org/I200769079"]},{"raw_affiliation_string":"HKUST Shenzhen-Hong Kong Collaborative Innovation Research Institute, Futian, China","institution_ids":["https://openalex.org/I4210096887"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":4.0965,"has_fulltext":false,"cited_by_count":13,"citation_normalized_percentile":{"value":0.9464654,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":99,"max":100},"biblio":{"volume":"36","issue":"12","first_page":"8164","last_page":"8178"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.9940000176429749,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11550","display_name":"Text and Document Classification Technologies","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7240543365478516},{"id":"https://openalex.org/keywords/motif","display_name":"Motif (music)","score":0.6719641089439392},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.45097607374191284},{"id":"https://openalex.org/keywords/recommender-system","display_name":"Recommender system","score":0.43830054998397827},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4375697672367096},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3458523154258728},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3276851177215576},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3245997428894043},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.14566954970359802}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7240543365478516},{"id":"https://openalex.org/C32276052","wikidata":"https://www.wikidata.org/wiki/Q908349","display_name":"Motif (music)","level":2,"score":0.6719641089439392},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.45097607374191284},{"id":"https://openalex.org/C557471498","wikidata":"https://www.wikidata.org/wiki/Q554950","display_name":"Recommender system","level":2,"score":0.43830054998397827},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4375697672367096},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3458523154258728},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3276851177215576},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3245997428894043},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.14566954970359802},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tkde.2024.3437775","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2024.3437775","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"},{"id":"pmh:oai:repository.hkust.edu.hk:1783.1-144839","is_oa":false,"landing_page_url":"http://repository.hkust.edu.hk/ir/Record/1783.1-144839","pdf_url":null,"source":{"id":"https://openalex.org/S4306401796","display_name":"Rare & Special e-Zone (The Hong Kong University of Science and Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I200769079","host_organization_name":"Hong Kong University of Science and Technology","host_organization_lineage":["https://openalex.org/I200769079"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4963764348","display_name":null,"funder_award_id":"2023A0505030004","funder_id":"https://openalex.org/F4320335795","funder_display_name":"Science and Technology Planning Project of Guangdong Province"},{"id":"https://openalex.org/G8560870210","display_name":null,"funder_award_id":"62306254","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335795","display_name":"Science and Technology Planning Project of Guangdong Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1677182931","https://openalex.org/W1986159170","https://openalex.org/W1999954155","https://openalex.org/W2157365260","https://openalex.org/W2396881363","https://openalex.org/W2531051281","https://openalex.org/W2602318385","https://openalex.org/W2744140371","https://openalex.org/W2792791113","https://openalex.org/W2891400669","https://openalex.org/W2916581152","https://openalex.org/W2963669159","https://openalex.org/W2964068143","https://openalex.org/W2983825113","https://openalex.org/W3018980093","https://openalex.org/W3024033076","https://openalex.org/W3080586167","https://openalex.org/W3102563707","https://openalex.org/W3111360199","https://openalex.org/W3152834571","https://openalex.org/W3187287398","https://openalex.org/W3192905713","https://openalex.org/W3198168376","https://openalex.org/W3199817716","https://openalex.org/W3202819594","https://openalex.org/W3215452784","https://openalex.org/W4200046635","https://openalex.org/W4206367183","https://openalex.org/W4210334834","https://openalex.org/W4210752699","https://openalex.org/W4212804458","https://openalex.org/W4220894606","https://openalex.org/W4224035645","https://openalex.org/W4282017563","https://openalex.org/W4285138922","https://openalex.org/W4290830324","https://openalex.org/W4290927771","https://openalex.org/W4290930066","https://openalex.org/W4307717106","https://openalex.org/W4313800388","https://openalex.org/W4321015976","https://openalex.org/W4362520745","https://openalex.org/W4367046880","https://openalex.org/W4367047209","https://openalex.org/W4378174847","https://openalex.org/W4382239609","https://openalex.org/W4382344901","https://openalex.org/W4387757693","https://openalex.org/W4387846871","https://openalex.org/W4388052771","https://openalex.org/W6640963894","https://openalex.org/W6726186668","https://openalex.org/W6801853492","https://openalex.org/W6802320626","https://openalex.org/W6810026998","https://openalex.org/W6839688514","https://openalex.org/W6852936508"],"related_works":["https://openalex.org/W3170299350","https://openalex.org/W2368410102","https://openalex.org/W2605676258","https://openalex.org/W2368037387","https://openalex.org/W190186656","https://openalex.org/W2902352756","https://openalex.org/W2377079823","https://openalex.org/W4390273403","https://openalex.org/W4386781444","https://openalex.org/W2953439652"],"abstract_inverted_index":{"Making":[0],"accurate":[1],"and":[2,21,40,71,120,137,151,163,184,211,228],"safe":[3],"clinical":[4],"decisions":[5],"for":[6,35,198],"patients":[7],"has":[8,57],"long":[9],"been":[10,59],"a":[11,76,103,122,156,194],"challenging":[12],"task.":[13],"With":[14],"the":[15,22,46,62,66,83,134,146,175,179,185,207,215,226],"proliferation":[16],"of":[17,25,48,65,88,140,230],"electronic":[18],"health":[19],"records":[20],"rapid":[23],"advancement":[24],"technology,":[26],"drug":[27,69,98,115,141,176],"recommender":[28,84],"systems":[29],"have":[30],"emerged":[31],"as":[32,51],"invaluable":[33],"aids":[34],"healthcare":[36],"professionals,":[37],"offering":[38],"precise":[39],"secure":[41],"prescriptions.":[42],"Among":[43],"prevailing":[44],"methods,":[45],"exploration":[47],"motifs,":[49],"defined":[50],"substructures":[52],"with":[53,178],"specific":[54],"biological":[55],"functions,":[56],"largely":[58],"overlooked.":[60],"Nevertheless,":[61],"substantial":[63],"impact":[64],"motifs":[67,150],"on":[68,182,187,221],"efficacy":[70],"patient":[72],"diseases":[73],"implies":[74],"that":[75],"more":[77],"extensive":[78],"incorporation":[79],"could":[80],"potentially":[81],"improve":[82],"systems.":[85],"In":[86,106],"light":[87],"this,":[89],"we":[90,109,154],"introduce":[91],"<italic":[92,231],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[93,232],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">DEPOT</i>":[94,233],",":[95],"an":[96],"innovative":[97,131],"recommendation":[99],"framework":[100],"developed":[101],"from":[102,159],"motif-aware":[104],"perspective.":[105],"our":[107],"approach,":[108],"employ":[110],"chemical":[111],"decomposition":[112],"to":[113,126,170],"partition":[114],"molecules":[116],"into":[117,145,174],"semantic":[118],"motif-trees":[119],"design":[121],"structure-aware":[123],"graph":[124],"transformer":[125],"capture":[127],"motif":[128],"collaboration.":[129],"This":[130,165],"practice":[132],"preserves":[133],"topology":[135],"knowledge":[136],"facilitates":[138],"perception":[139],"functionality.":[142],"To":[143],"delve":[144],"dynamic":[147],"correlation":[148],"between":[149,209],"disease":[152],"progression,":[153],"conduct":[155],"meticulous":[157],"investigation":[158],"two":[160],"perspectives:":[161],"repetition":[162],"exploration.":[164],"comprehensive":[166],"analysis":[167],"allows":[168],"us":[169],"gain":[171],"valuable":[172],"insights":[173],"turnover,":[177],"former":[180],"focusing":[181],"reusability":[183],"latter":[186],"discovering":[188],"new":[189],"requirements.":[190],"We":[191],"further":[192],"formulate":[193],"historical":[195],"weighting":[196],"strategy":[197],"drug-drug":[199],"interaction":[200],"(DDI)":[201],"objective,":[202],"enabling":[203],"adaptive":[204],"control":[205],"over":[206],"trade-off":[208],"accuracy":[210],"safety":[212],"criteria":[213],"throughout":[214],"training":[216],"process.":[217],"Extensive":[218],"experiments":[219],"conducted":[220],"four":[222],"data":[223],"sets":[224],"validate":[225],"effectiveness":[227],"robustness":[229],".":[234]},"counts_by_year":[{"year":2026,"cited_by_count":6},{"year":2025,"cited_by_count":7}],"updated_date":"2026-06-20T22:02:38.213706","created_date":"2025-10-10T00:00:00"}
