{"id":"https://openalex.org/W2963799407","doi":"https://doi.org/10.1109/tkde.2018.2789451","title":"Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data","display_name":"Ultra High-Dimensional Nonlinear Feature Selection for Big Biological Data","publication_year":2018,"publication_date":"2018-01-08","ids":{"openalex":"https://openalex.org/W2963799407","doi":"https://doi.org/10.1109/tkde.2018.2789451","mag":"2963799407"},"language":"en","primary_location":{"id":"doi:10.1109/tkde.2018.2789451","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2018.2789451","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5046358579","display_name":"Makoto Yamada","orcid":"https://orcid.org/0000-0001-7508-5094"},"institutions":[{"id":"https://openalex.org/I4210126580","display_name":"RIKEN Center for Advanced Intelligence Project","ror":"https://ror.org/03ckxwf91","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210110652","https://openalex.org/I4210126580"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Makoto Yamada","raw_affiliation_strings":["Center for Advanced Intelligence Project, RIKEN, Chuo-ku, Japan"],"affiliations":[{"raw_affiliation_string":"Center for Advanced Intelligence Project, RIKEN, Chuo-ku, Japan","institution_ids":["https://openalex.org/I4210126580"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115590976","display_name":"Jiliang Tang","orcid":null},"institutions":[{"id":"https://openalex.org/I55732556","display_name":"Arizona State University","ror":"https://ror.org/03efmqc40","country_code":"US","type":"education","lineage":["https://openalex.org/I55732556"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jiliang Tang","raw_affiliation_strings":["Department of Computer Science, Arizona State Univerity, Tempe, AZ"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Arizona State Univerity, Tempe, AZ","institution_ids":["https://openalex.org/I55732556"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006967054","display_name":"Jose Lugo-Martinez","orcid":"https://orcid.org/0000-0002-6312-1577"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jose Lugo-Martinez","raw_affiliation_strings":["Department of Computer Science and Informatics, Indiana University Bloomington, Bloomington, IN"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Informatics, Indiana University Bloomington, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083431950","display_name":"Ermin Hodzic","orcid":"https://orcid.org/0000-0003-2323-1277"},"institutions":[{"id":"https://openalex.org/I18014758","display_name":"Simon Fraser University","ror":"https://ror.org/0213rcc28","country_code":"CA","type":"education","lineage":["https://openalex.org/I18014758"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Ermin Hodzic","raw_affiliation_strings":["Department of Computing Science, Simon Fraser University, Burnaby, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, Simon Fraser University, Burnaby, BC, Canada","institution_ids":["https://openalex.org/I18014758"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036712011","display_name":"Raunak Shrestha","orcid":"https://orcid.org/0000-0002-1144-1413"},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Raunak Shrestha","raw_affiliation_strings":["Department of Bioinformatics, University of British Columbia, Vancouver, BC, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Bioinformatics, University of British Columbia, Vancouver, BC, Canada","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108857275","display_name":"Avishek Saha","orcid":null},"institutions":[{"id":"https://openalex.org/I1311688040","display_name":"Amazon (United States)","ror":"https://ror.org/04mv4n011","country_code":"US","type":"company","lineage":["https://openalex.org/I1311688040"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Avishek Saha","raw_affiliation_strings":["A9, Amazon, Palo Alto, CA"],"affiliations":[{"raw_affiliation_string":"A9, Amazon, Palo Alto, CA","institution_ids":["https://openalex.org/I1311688040"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026707467","display_name":"Hua Ouyang","orcid":"https://orcid.org/0009-0001-4259-5132"},"institutions":[{"id":"https://openalex.org/I4210153776","display_name":"Apple (United States)","ror":"https://ror.org/059hsda18","country_code":"US","type":"company","lineage":["https://openalex.org/I4210153776"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hua Ouyang","raw_affiliation_strings":["Apple, Cupertino, CA"],"affiliations":[{"raw_affiliation_string":"Apple, Cupertino, CA","institution_ids":["https://openalex.org/I4210153776"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101771061","display_name":"Dawei Yin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210103986","display_name":"Jingdong (China)","ror":"https://ror.org/01dkjkq64","country_code":"CN","type":"company","lineage":["https://openalex.org/I4210103986"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dawei Yin","raw_affiliation_strings":["JD.com, 8 Beichen West Rd. Beijing, China"],"affiliations":[{"raw_affiliation_string":"JD.com, 8 Beichen West Rd. Beijing, China","institution_ids":["https://openalex.org/I4210103986"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059001924","display_name":"Hiroshi Mamitsuka","orcid":"https://orcid.org/0000-0002-6607-5617"},"institutions":[{"id":"https://openalex.org/I22299242","display_name":"Kyoto University","ror":"https://ror.org/02kpeqv85","country_code":"JP","type":"education","lineage":["https://openalex.org/I22299242"]},{"id":"https://openalex.org/I4210088032","display_name":"Kyoto Bunkyo University","ror":"https://ror.org/0037an472","country_code":"JP","type":"education","lineage":["https://openalex.org/I4210088032"]},{"id":"https://openalex.org/I4399598384","display_name":"Kyoto University Institute for Chemical Research","ror":"https://ror.org/0349bbg69","country_code":null,"type":"facility","lineage":["https://openalex.org/I22299242","https://openalex.org/I4399598384"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Hiroshi Mamitsuka","raw_affiliation_strings":["Institute for Chemical Research, Kyoto University, Uji, Japan"],"affiliations":[{"raw_affiliation_string":"Institute for Chemical Research, Kyoto University, Uji, Japan","institution_ids":["https://openalex.org/I4210088032","https://openalex.org/I22299242","https://openalex.org/I4399598384"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113664716","display_name":"Cenk Sahinalp","orcid":null},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cenk Sahinalp","raw_affiliation_strings":["Department of Computer Science, Indiana University Bloomington, Bloomington, IN"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Indiana University Bloomington, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051324698","display_name":"Predrag Radivojac","orcid":"https://orcid.org/0000-0002-6769-0793"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Predrag Radivojac","raw_affiliation_strings":["School of Informatics, Indiana University, Bloomington, IN"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021346979","display_name":"Filippo Menczer","orcid":"https://orcid.org/0000-0003-4384-2876"},"institutions":[{"id":"https://openalex.org/I4210119109","display_name":"Indiana University Bloomington","ror":"https://ror.org/02k40bc56","country_code":"US","type":"education","lineage":["https://openalex.org/I4210119109","https://openalex.org/I592451"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Filippo Menczer","raw_affiliation_strings":["School of Informatics, Indiana University, Bloomington, IN"],"affiliations":[{"raw_affiliation_string":"School of Informatics, Indiana University, Bloomington, IN","institution_ids":["https://openalex.org/I4210119109"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5029392006","display_name":"Yi Chang","orcid":"https://orcid.org/0000-0003-2697-8093"},"institutions":[{"id":"https://openalex.org/I194450716","display_name":"Jilin University","ror":"https://ror.org/00js3aw79","country_code":"CN","type":"education","lineage":["https://openalex.org/I194450716"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Chang","raw_affiliation_strings":["Jilin University, GuiLin Lu, Chaoyang Qu, Changchun Shi, Jilin Sheng, People's Republic of China"],"affiliations":[{"raw_affiliation_string":"Jilin University, GuiLin Lu, Chaoyang Qu, Changchun Shi, Jilin Sheng, People's Republic of China","institution_ids":["https://openalex.org/I194450716"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5046358579"],"corresponding_institution_ids":["https://openalex.org/I4210126580"],"apc_list":null,"apc_paid":null,"fwci":3.4457,"has_fulltext":false,"cited_by_count":75,"citation_normalized_percentile":{"value":0.93764485,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":94,"max":100},"biblio":{"volume":"30","issue":"7","first_page":"1352","last_page":"1365"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10836","display_name":"Metabolomics and Mass Spectrometry Studies","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7772549390792847},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.6671866178512573},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6546136140823364},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6284200549125671},{"id":"https://openalex.org/keywords/big-data","display_name":"Big data","score":0.5702733993530273},{"id":"https://openalex.org/keywords/interpretability","display_name":"Interpretability","score":0.5701994895935059},{"id":"https://openalex.org/keywords/dimensionality-reduction","display_name":"Dimensionality reduction","score":0.4943113327026367},{"id":"https://openalex.org/keywords/lasso","display_name":"Lasso (programming language)","score":0.45191651582717896},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.42202073335647583}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7772549390792847},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.6671866178512573},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6546136140823364},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6284200549125671},{"id":"https://openalex.org/C75684735","wikidata":"https://www.wikidata.org/wiki/Q858810","display_name":"Big data","level":2,"score":0.5702733993530273},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.5701994895935059},{"id":"https://openalex.org/C70518039","wikidata":"https://www.wikidata.org/wiki/Q16000077","display_name":"Dimensionality reduction","level":2,"score":0.4943113327026367},{"id":"https://openalex.org/C37616216","wikidata":"https://www.wikidata.org/wiki/Q3218363","display_name":"Lasso (programming language)","level":2,"score":0.45191651582717896},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.42202073335647583},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tkde.2018.2789451","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2018.2789451","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G7110045","display_name":null,"funder_award_id":"IIS-1714741","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8783789473","display_name":null,"funder_award_id":"IIS-1715940","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W344268215","https://openalex.org/W1607408214","https://openalex.org/W1638081485","https://openalex.org/W1646506067","https://openalex.org/W1661871015","https://openalex.org/W1678356000","https://openalex.org/W1920328734","https://openalex.org/W1964640688","https://openalex.org/W1979003656","https://openalex.org/W2020082788","https://openalex.org/W2031291897","https://openalex.org/W2063978378","https://openalex.org/W2064921494","https://openalex.org/W2081930221","https://openalex.org/W2087257760","https://openalex.org/W2096173332","https://openalex.org/W2096364142","https://openalex.org/W2098766654","https://openalex.org/W2101207645","https://openalex.org/W2104812688","https://openalex.org/W2105465844","https://openalex.org/W2107412135","https://openalex.org/W2116234390","https://openalex.org/W2119387367","https://openalex.org/W2119869458","https://openalex.org/W2120875981","https://openalex.org/W2127658298","https://openalex.org/W2129014109","https://openalex.org/W2130479394","https://openalex.org/W2131101925","https://openalex.org/W2134783591","https://openalex.org/W2135046866","https://openalex.org/W2135904200","https://openalex.org/W2138560091","https://openalex.org/W2148762636","https://openalex.org/W2149153852","https://openalex.org/W2153542182","https://openalex.org/W2154053567","https://openalex.org/W2155653793","https://openalex.org/W2161112598","https://openalex.org/W2170743862","https://openalex.org/W2395005906","https://openalex.org/W2395860443","https://openalex.org/W2593996946","https://openalex.org/W2998216295","https://openalex.org/W3099185210","https://openalex.org/W3104091918","https://openalex.org/W3119651796","https://openalex.org/W3126122061","https://openalex.org/W3203127690","https://openalex.org/W4285719527","https://openalex.org/W6611646129","https://openalex.org/W6636281135","https://openalex.org/W6636909375","https://openalex.org/W6636914306","https://openalex.org/W6640308425","https://openalex.org/W6674807470","https://openalex.org/W6676361318","https://openalex.org/W6677076290","https://openalex.org/W6678992168","https://openalex.org/W6679384483","https://openalex.org/W6682043057","https://openalex.org/W7066667914"],"related_works":["https://openalex.org/W2905433371","https://openalex.org/W4390569940","https://openalex.org/W2888392564","https://openalex.org/W2380784125","https://openalex.org/W2810025138","https://openalex.org/W1997711767","https://openalex.org/W20047544","https://openalex.org/W4386543887","https://openalex.org/W4387885766","https://openalex.org/W2765894738"],"abstract_inverted_index":{"Machine":[0],"learning":[1,17,38],"methods":[2],"are":[3,19],"used":[4],"to":[5,44,63,78,103,116,158],"discover":[6],"complex":[7],"nonlinear":[8,37],"relationships":[9],"in":[10,110,166],"biological":[11,48],"and":[12,94,115],"medical":[13],"data.":[14,49],"However,":[15],"sophisticated":[16,163],"models":[18,165],"computationally":[20],"unfeasible":[21],"for":[22,36],"data":[23],"with":[24,68,87,126],"millions":[25,65],"of":[26,66,70,83,132,138,154,162],"features.":[27],"Here,":[28],"we":[29,52],"introduce":[30],"the":[31,55,159],"first":[32],"feature":[33],"selection":[34],"method":[35,75],"problems":[39],"that":[40],"can":[41,143],"scale":[42,53],"up":[43,54],"large,":[45],"ultra-high":[46],"dimensional":[47],"More":[50],"specifically,":[51],"novel":[56],"Hilbert-Schmidt":[57],"Independence":[58],"Criterion":[59],"Lasso":[60],"(HSIC":[61],"Lasso)":[62],"handle":[64],"features":[67,86,155],"tens":[69],"thousand":[71],"samples.":[72],"The":[73,151],"proposed":[74],"is":[76,99],"guaranteed":[77],"find":[79],"an":[80],"optimal":[81],"subset":[82],"maximally":[84],"predictive":[85,92],"minimal":[88],"redundancy,":[89],"yielding":[90],"higher":[91],"power":[93],"improved":[95],"interpretability.":[96],"Its":[97],"effectiveness":[98],"demonstrated":[100],"through":[101],"applications":[102],"classify":[104],"phenotypes":[105],"based":[106],"on":[107,146],"module":[108],"expression":[109],"human":[111],"prostate":[112],"cancer":[113],"patients":[114],"detect":[117],"enzymes":[118],"among":[119],"protein":[120],"structures.":[121],"We":[122],"achieve":[123],"high":[124],"accuracy":[125],"as":[127,129],"few":[128],"20":[130],"out":[131],"one":[133],"million":[134],"features-a":[135],"dimensionality":[136],"reduction":[137,153],"99.998":[139],"percent.":[140],"Our":[141],"algorithm":[142],"be":[144],"implemented":[145],"commodity":[147],"cloud":[148],"computing":[149],"platforms.":[150],"dramatic":[152],"may":[156],"lead":[157],"ubiquitous":[160],"deployment":[161],"prediction":[164],"mobile":[167],"health":[168],"care":[169],"applications.":[170]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":13},{"year":2024,"cited_by_count":4},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":8},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":13},{"year":2018,"cited_by_count":2}],"updated_date":"2026-04-04T08:04:53.788161","created_date":"2025-10-10T00:00:00"}
