{"id":"https://openalex.org/W2254563062","doi":"https://doi.org/10.1109/tkde.2015.2492559","title":"Clustering and Summarizing Protein-Protein Interaction Networks: A Survey","display_name":"Clustering and Summarizing Protein-Protein Interaction Networks: A Survey","publication_year":2015,"publication_date":"2015-10-19","ids":{"openalex":"https://openalex.org/W2254563062","doi":"https://doi.org/10.1109/tkde.2015.2492559","mag":"2254563062"},"language":"en","primary_location":{"id":"doi:10.1109/tkde.2015.2492559","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2015.2492559","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061002947","display_name":"Sourav S. Bhowmick","orcid":"https://orcid.org/0000-0003-1957-8016"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Sourav S. Bhowmick","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Singapore","School of Computer Engineering, Nanyang Technological University, Singapore#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore#TAB#","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003437661","display_name":"Boon Siew Seah","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Boon Siew Seah","raw_affiliation_strings":["School of Computer Engineering, Nanyang Technological University, Singapore","School of Computer Engineering, Nanyang Technological University, Singapore#TAB#"],"affiliations":[{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"School of Computer Engineering, Nanyang Technological University, Singapore#TAB#","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5061002947"],"corresponding_institution_ids":["https://openalex.org/I172675005"],"apc_list":null,"apc_paid":null,"fwci":3.5989,"has_fulltext":false,"cited_by_count":90,"citation_normalized_percentile":{"value":0.936987,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"28","issue":"3","first_page":"638","last_page":"658"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13127","display_name":"Biotin and Related Studies","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9779999852180481,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8261330127716064},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7722142934799194},{"id":"https://openalex.org/keywords/automatic-summarization","display_name":"Automatic summarization","score":0.7372130155563354},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.587020218372345},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5768215656280518},{"id":"https://openalex.org/keywords/popularity","display_name":"Popularity","score":0.49948573112487793},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.4136827886104584},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4119880497455597},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.2733720541000366},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.2718661427497864},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2572425603866577}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8261330127716064},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7722142934799194},{"id":"https://openalex.org/C170858558","wikidata":"https://www.wikidata.org/wiki/Q1394144","display_name":"Automatic summarization","level":2,"score":0.7372130155563354},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.587020218372345},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5768215656280518},{"id":"https://openalex.org/C2780586970","wikidata":"https://www.wikidata.org/wiki/Q1357284","display_name":"Popularity","level":2,"score":0.49948573112487793},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.4136827886104584},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4119880497455597},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.2733720541000366},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2718661427497864},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2572425603866577},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C77805123","wikidata":"https://www.wikidata.org/wiki/Q161272","display_name":"Social psychology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tkde.2015.2492559","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tkde.2015.2492559","pdf_url":null,"source":{"id":"https://openalex.org/S30698027","display_name":"IEEE Transactions on Knowledge and Data Engineering","issn_l":"1041-4347","issn":["1041-4347","1558-2191","2326-3865"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320439","host_organization_name":"IEEE Computer Society","host_organization_lineage":["https://openalex.org/P4310320439","https://openalex.org/P4310319808"],"host_organization_lineage_names":["IEEE Computer Society","Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Knowledge and Data Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":125,"referenced_works":["https://openalex.org/W606701410","https://openalex.org/W1485582261","https://openalex.org/W1529855236","https://openalex.org/W1544009106","https://openalex.org/W1550080987","https://openalex.org/W1566399673","https://openalex.org/W1783384641","https://openalex.org/W1876024155","https://openalex.org/W1918391659","https://openalex.org/W1926568554","https://openalex.org/W1965169361","https://openalex.org/W1969169667","https://openalex.org/W1971421925","https://openalex.org/W1972343960","https://openalex.org/W1983524036","https://openalex.org/W1988263223","https://openalex.org/W1993591356","https://openalex.org/W1996652658","https://openalex.org/W1997279341","https://openalex.org/W1997331017","https://openalex.org/W2003798029","https://openalex.org/W2005393972","https://openalex.org/W2007448777","https://openalex.org/W2023954353","https://openalex.org/W2025569092","https://openalex.org/W2030006812","https://openalex.org/W2032273054","https://openalex.org/W2033599203","https://openalex.org/W2037036397","https://openalex.org/W2038920443","https://openalex.org/W2047940964","https://openalex.org/W2050721857","https://openalex.org/W2057793636","https://openalex.org/W2058022444","https://openalex.org/W2058639840","https://openalex.org/W2061369703","https://openalex.org/W2062533676","https://openalex.org/W2065304353","https://openalex.org/W2067305633","https://openalex.org/W2070232376","https://openalex.org/W2074986735","https://openalex.org/W2080379754","https://openalex.org/W2082565035","https://openalex.org/W2084619201","https://openalex.org/W2087240661","https://openalex.org/W2088216962","https://openalex.org/W2089734397","https://openalex.org/W2090422756","https://openalex.org/W2093830031","https://openalex.org/W2095293504","https://openalex.org/W2095956310","https://openalex.org/W2097452216","https://openalex.org/W2097698606","https://openalex.org/W2098946845","https://openalex.org/W2099982459","https://openalex.org/W2100371004","https://openalex.org/W2100585269","https://openalex.org/W2100628741","https://openalex.org/W2102717275","https://openalex.org/W2103453943","https://openalex.org/W2104042033","https://openalex.org/W2104315543","https://openalex.org/W2107710781","https://openalex.org/W2107817133","https://openalex.org/W2109609081","https://openalex.org/W2113019448","https://openalex.org/W2113613985","https://openalex.org/W2113654464","https://openalex.org/W2114228709","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2117513900","https://openalex.org/W2123318061","https://openalex.org/W2124166542","https://openalex.org/W2125580539","https://openalex.org/W2125673723","https://openalex.org/W2126118258","https://openalex.org/W2127351311","https://openalex.org/W2132582966","https://openalex.org/W2133919533","https://openalex.org/W2134008243","https://openalex.org/W2134046693","https://openalex.org/W2135098204","https://openalex.org/W2135512436","https://openalex.org/W2135827982","https://openalex.org/W2136549265","https://openalex.org/W2136850043","https://openalex.org/W2137683543","https://openalex.org/W2137917513","https://openalex.org/W2138003801","https://openalex.org/W2140280811","https://openalex.org/W2140937045","https://openalex.org/W2141144378","https://openalex.org/W2142460132","https://openalex.org/W2143381192","https://openalex.org/W2144273135","https://openalex.org/W2146264532","https://openalex.org/W2149148688","https://openalex.org/W2149676146","https://openalex.org/W2150681269","https://openalex.org/W2150934340","https://openalex.org/W2151176490","https://openalex.org/W2151936673","https://openalex.org/W2152495216","https://openalex.org/W2153280946","https://openalex.org/W2155968618","https://openalex.org/W2156223899","https://openalex.org/W2160042914","https://openalex.org/W2160220393","https://openalex.org/W2160313295","https://openalex.org/W2162142896","https://openalex.org/W2162735386","https://openalex.org/W2162891889","https://openalex.org/W2164928285","https://openalex.org/W2165232124","https://openalex.org/W2165533101","https://openalex.org/W2166344835","https://openalex.org/W2166689108","https://openalex.org/W2167295942","https://openalex.org/W2167869241","https://openalex.org/W2169499007","https://openalex.org/W2169805130","https://openalex.org/W2169905457","https://openalex.org/W2170746618","https://openalex.org/W4240943811"],"related_works":["https://openalex.org/W2368605798","https://openalex.org/W2366403280","https://openalex.org/W1495108544","https://openalex.org/W2091301346","https://openalex.org/W2518037665","https://openalex.org/W3148229873","https://openalex.org/W2150160875","https://openalex.org/W4242223894","https://openalex.org/W1517524280","https://openalex.org/W4389760904"],"abstract_inverted_index":{"The":[0],"increasing":[1],"availability":[2],"and":[3,24,41,104,141],"significance":[4],"of":[5,16,26,44,51,90,122,130,138,184],"large-scale":[6],"protein-protein":[7],"interaction":[8],"(PPI)":[9],"data":[10,31,64,151],"has":[11,54],"resulted":[12],"in":[13,58,135,188],"a":[14,45,106,166],"flurry":[15],"research":[17,66],"activity":[18],"to":[19,48,115,126,158,170,180],"comprehend":[20],"the":[21,39,59,71,112,128,131,136,150,185],"organization,":[22],"processes,":[23],"functioning":[25],"cells":[27],"by":[28,101,111,149,192],"analyzing":[29],"these":[30],"at":[32],"network":[33,47,132,145,172,174],"level.":[34],"Network":[35],"clustering,":[36,173],"that":[37,76],"analyzes":[38],"topological":[40],"functional":[42,86,195],"properties":[43],"PPI":[46,78,117,139,171,190],"identify":[49],"clusters":[50],"interacting":[52],"proteins,":[53,92],"gained":[55],"significant":[56],"popularity":[57],"bioinformatics":[60,113],"as":[61,63],"well":[62],"mining":[65,152],"communities.":[67],"Many":[68],"studies":[69],"since":[70],"last":[72],"decade":[73],"have":[74],"shown":[75],"clustering":[77,133,146],"networks":[79,140,191],"is":[80,125],"an":[81],"effective":[82],"approach":[83],"for":[84],"identifying":[85],"modules,":[87],"revealing":[88],"functions":[89],"unknown":[91],"etc.":[93],"In":[94],"this":[95,99,123,160],"paper,":[96],"we":[97],"examine":[98],"issue":[100],"classifying,":[102],"discussing,":[103],"comparing":[105],"wide":[107],"ranging":[108],"approaches":[109],"proposed":[110,148],"community":[114,153],"cluster":[116],"networks.":[118],"A":[119],"pervasive":[120],"desire":[121],"review":[124,165],"emphasize":[127],"uniqueness":[129],"problem":[134,161,169],"context":[137],"highlight":[142],"why":[143],"generic":[144],"algorithms":[147],"cannot":[154],"be":[155],"directly":[156],"adopted":[157],"address":[159],"effectively.":[162],"We":[163],"also":[164],"closely":[167],"related":[168],"summarization,":[175],"which":[176],"can":[177],"enable":[178],"us":[179],"make":[181],"sense":[182],"out":[183],"information":[186],"contained":[187],"large":[189],"generating":[193],"multi-level":[194],"summaries.":[196]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":9},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":11},{"year":2020,"cited_by_count":10},{"year":2019,"cited_by_count":10},{"year":2018,"cited_by_count":12},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":3}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
