{"id":"https://openalex.org/W2115870145","doi":"https://doi.org/10.1109/titb.2009.2032540","title":"Computing Consistency Between Microarray Data and Known Gene Regulation Relationships","display_name":"Computing Consistency Between Microarray Data and Known Gene Regulation Relationships","publication_year":2009,"publication_date":"2009-09-28","ids":{"openalex":"https://openalex.org/W2115870145","doi":"https://doi.org/10.1109/titb.2009.2032540","mag":"2115870145","pmid":"https://pubmed.ncbi.nlm.nih.gov/19783507"},"language":"en","primary_location":{"id":"doi:10.1109/titb.2009.2032540","is_oa":false,"landing_page_url":"https://doi.org/10.1109/titb.2009.2032540","pdf_url":null,"source":{"id":"https://openalex.org/S68937846","display_name":"IEEE Transactions on Information Technology in Biomedicine","issn_l":"1089-7771","issn":["1089-7771","1558-0032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Technology in Biomedicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5112474888","display_name":"Dong\u2010Guk Shin","orcid":"https://orcid.org/0009-0004-4649-7363"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Dong-Guk Shin","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269, USA. shin@engr.uconn.edu","Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT 06269, USA. shin@engr.uconn.edu","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002147341","display_name":"Syed A. Jaffar Kazmi","orcid":"https://orcid.org/0000-0002-1577-8419"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"S.A. Kazmi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109209008","display_name":"Baikang Pei","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Baikang Pei","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113946149","display_name":"Yoo-Ah Kim","orcid":null},"institutions":[{"id":"https://openalex.org/I1299022934","display_name":"United States Department of Health and Human Services","ror":"https://ror.org/033jnv181","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934"]},{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]},{"id":"https://openalex.org/I4210140884","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yoo-Ah Kim","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","National Cancer Institute, National Institutes of Health DHHS, Bethesda, MD, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]},{"raw_affiliation_string":"National Cancer Institute, National Institutes of Health DHHS, Bethesda, MD, USA","institution_ids":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210140884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084051183","display_name":"Joyce R. Maddox","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Maddox","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112723247","display_name":"R. Nori","orcid":null},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"R. Nori","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Connecticut, Storrs, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078010967","display_name":"Angela Wong","orcid":"https://orcid.org/0000-0003-2530-5727"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"A. Wong","raw_affiliation_strings":["Department of Developmental Biology, University of Connecticut, Farmington, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Developmental Biology, University of Connecticut, Farmington, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043300761","display_name":"Winfried Krueger","orcid":"https://orcid.org/0000-0002-1269-9926"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"W. Krueger","raw_affiliation_strings":["Department of Developmental Biology, University of Connecticut, Farmington, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Developmental Biology, University of Connecticut, Farmington, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5067453135","display_name":"David W. Rowe","orcid":"https://orcid.org/0000-0001-7852-7775"},"institutions":[{"id":"https://openalex.org/I140172145","display_name":"University of Connecticut","ror":"https://ror.org/02der9h97","country_code":"US","type":"education","lineage":["https://openalex.org/I140172145"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"D. Rowe","raw_affiliation_strings":["Department of Developmental Biology, University of Connecticut, Farmington, CT, USA"],"affiliations":[{"raw_affiliation_string":"Department of Developmental Biology, University of Connecticut, Farmington, CT, USA","institution_ids":["https://openalex.org/I140172145"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5112474888"],"corresponding_institution_ids":["https://openalex.org/I140172145"],"apc_list":null,"apc_paid":null,"fwci":0.1312,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.54285732,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":"6","first_page":"1075","last_page":"1082"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/microarray-analysis-techniques","display_name":"Microarray analysis techniques","score":0.7285999059677124},{"id":"https://openalex.org/keywords/consistency","display_name":"Consistency (knowledge bases)","score":0.6607455015182495},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6533219814300537},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6417602896690369},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.6255859732627869},{"id":"https://openalex.org/keywords/microarray-databases","display_name":"Microarray databases","score":0.6192945241928101},{"id":"https://openalex.org/keywords/microarray","display_name":"Microarray","score":0.6133186221122742},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.5152474045753479},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4772648215293884},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.47155261039733887},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"Gene expression profiling","score":0.45092153549194336},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.43220359086990356},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.41985538601875305},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4118339419364929},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.406547874212265},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.3836866617202759},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.3476206064224243},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2779269218444824},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.13740989565849304},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.10794132947921753}],"concepts":[{"id":"https://openalex.org/C8415881","wikidata":"https://www.wikidata.org/wiki/Q6839217","display_name":"Microarray analysis techniques","level":4,"score":0.7285999059677124},{"id":"https://openalex.org/C2776436953","wikidata":"https://www.wikidata.org/wiki/Q5163215","display_name":"Consistency (knowledge bases)","level":2,"score":0.6607455015182495},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6533219814300537},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6417602896690369},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.6255859732627869},{"id":"https://openalex.org/C548314002","wikidata":"https://www.wikidata.org/wiki/Q6839218","display_name":"Microarray databases","level":5,"score":0.6192945241928101},{"id":"https://openalex.org/C186836561","wikidata":"https://www.wikidata.org/wiki/Q1931516","display_name":"Microarray","level":4,"score":0.6133186221122742},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.5152474045753479},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4772648215293884},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47155261039733887},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.45092153549194336},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.43220359086990356},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.41985538601875305},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4118339419364929},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.406547874212265},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3836866617202759},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.3476206064224243},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2779269218444824},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.13740989565849304},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.10794132947921753},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1109/titb.2009.2032540","is_oa":false,"landing_page_url":"https://doi.org/10.1109/titb.2009.2032540","pdf_url":null,"source":{"id":"https://openalex.org/S68937846","display_name":"IEEE Transactions on Information Technology in Biomedicine","issn_l":"1089-7771","issn":["1089-7771","1558-0032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Technology in Biomedicine","raw_type":"journal-article"},{"id":"pmid:19783507","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19783507","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1546952499","https://openalex.org/W1985695385","https://openalex.org/W2021239799","https://openalex.org/W2044514479","https://openalex.org/W2074906123","https://openalex.org/W2081098333","https://openalex.org/W2102992354","https://openalex.org/W2103017472","https://openalex.org/W2106608030","https://openalex.org/W2114656857","https://openalex.org/W2118934251","https://openalex.org/W2140601463","https://openalex.org/W2142237411","https://openalex.org/W2157795344","https://openalex.org/W2159675211","https://openalex.org/W2160453515","https://openalex.org/W2165674132","https://openalex.org/W4294107304"],"related_works":["https://openalex.org/W2943416042","https://openalex.org/W1544923801","https://openalex.org/W3152114242","https://openalex.org/W1974573031","https://openalex.org/W1982897783","https://openalex.org/W2490137852","https://openalex.org/W2056932428","https://openalex.org/W3023720143","https://openalex.org/W1483316219","https://openalex.org/W2412120523"],"abstract_inverted_index":{"Microarray":[0],"experiments":[1],"produce":[2],"expression":[3],"patterns":[4],"for":[5,145,201],"thousands":[6],"of":[7,20,36,43,63,97,105,159,181,184],"genes":[8,185],"at":[9],"once.":[10],"On":[11],"the":[12,27,41,61,70,81,86,99,136,157,169],"other":[13],"hand,":[14],"biomedical":[15],"literature":[16],"contains":[17],"large":[18],"amounts":[19],"gene":[21,45,110,118,148],"regulation":[22,46,111,119],"relationship":[23],"information":[24],"accumulated":[25],"over":[26],"years.":[28],"One":[29],"obvious":[30],"requirement":[31],"is":[32,52],"an":[33,49],"automated":[34,50],"way":[35,96],"comparing":[37],"microarray":[38,66,87,106],"data":[39,107],"with":[40,122,162],"collection":[42],"known":[44,109,200],"relationships.":[47,112],"Such":[48],"comparison":[51],"imperative":[53],"because":[54],"it":[55],"can":[56,73],"help":[57],"biologists":[58],"rapidly":[59],"understand":[60],"context":[62],"a":[64,94,102,116,129,146],"given":[65,103],"experiment.":[67,88],"In":[68,89],"addition,":[69],"consistency":[71,100],"measure":[72],"be":[74],"used":[75],"to":[76,127,138,205],"either":[77],"validate":[78],"or":[79],"refute":[80],"hypothesis":[82],"being":[83],"tested":[84],"using":[85],"this":[90],"paper":[91],"we":[92,134],"present":[93],"systematic":[95],"examining":[98],"between":[101],"set":[104],"and":[108,153,186,189,198],"We":[113,155],"first":[114],"introduce":[115],"simple":[117],"network":[120],"model":[121,137],"two":[123,163],"separate":[124],"algorithms":[125],"designed":[126],"isolate":[128],"maximally":[130],"consistent":[131,177],"network.":[132],"Subsequently,":[133],"extend":[135],"take":[139],"into":[140],"account":[141],"multiple":[142,179],"regulating":[143],"factors":[144],"single":[147],"while":[149],"highlighting":[150],"both":[151],"consistencies":[152],"inconsistencies.":[154],"illustrate":[156],"effectiveness":[158],"our":[160],"approach":[161],"practical":[164],"examples,":[165],"one":[166],"that":[167,191],"picks":[168],"peroxisome":[170],"proliferator-activated":[171],"receptor":[172],"(PPAR)":[173],"pathway":[174],"as":[175],"highly":[176],"from":[178],"pathways":[180],"Kyoto":[182],"encyclopedia":[183],"genomes":[187],"(KEGG),":[188],"another":[190],"isolates":[192],"key":[193],"regulatory":[194],"relationships":[195],"involving":[196],"nfkb1":[197],"others":[199],"macrophage's":[202],"counter":[203],"response":[204],"inflammation.":[206]},"counts_by_year":[{"year":2020,"cited_by_count":1}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
