{"id":"https://openalex.org/W2110782695","doi":"https://doi.org/10.1109/titb.2002.1006301","title":"Building a bioinformatics ontology using OIL","display_name":"Building a bioinformatics ontology using OIL","publication_year":2002,"publication_date":"2002-06-01","ids":{"openalex":"https://openalex.org/W2110782695","doi":"https://doi.org/10.1109/titb.2002.1006301","mag":"2110782695","pmid":"https://pubmed.ncbi.nlm.nih.gov/12075668"},"language":"en","primary_location":{"id":"doi:10.1109/titb.2002.1006301","is_oa":false,"landing_page_url":"https://doi.org/10.1109/titb.2002.1006301","pdf_url":null,"source":{"id":"https://openalex.org/S68937846","display_name":"IEEE Transactions on Information Technology in Biomedicine","issn_l":"1089-7771","issn":["1089-7771","1558-0032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Technology in Biomedicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5113694527","display_name":"R. Stevens","orcid":null},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"R. Stevens","raw_affiliation_strings":["Department of Computer Science, University of Manchester, UK. robert.stevens@cs.man.ac.uk","Dept. of Comput. Sci., Manchester Univ., UK#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Manchester, UK. robert.stevens@cs.man.ac.uk","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Manchester Univ., UK#TAB#","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027899893","display_name":"Carole Goble","orcid":"https://orcid.org/0000-0003-1219-2137"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"C. Goble","raw_affiliation_strings":["Department of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK","Dept. of Comput. Sci., Manchester Univ., UK#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Manchester Univ., UK#TAB#","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060350556","display_name":"Ian Horrocks","orcid":"https://orcid.org/0000-0002-2685-7462"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"I. Horrocks","raw_affiliation_strings":["Department of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK","Dept. of Comput. Sci., Manchester Univ., UK#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Manchester Univ., UK#TAB#","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047066677","display_name":"Sean Bechhofer","orcid":"https://orcid.org/0000-0002-5872-3573"},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"S. Bechhofer","raw_affiliation_strings":["Department of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK","Dept. of Comput. Sci., Manchester Univ., UK#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Manchester, Institute of Science and Technology, Manchester, UK","institution_ids":["https://openalex.org/I28407311"]},{"raw_affiliation_string":"Dept. of Comput. Sci., Manchester Univ., UK#TAB#","institution_ids":["https://openalex.org/I28407311"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5113694527"],"corresponding_institution_ids":["https://openalex.org/I28407311"],"apc_list":null,"apc_paid":null,"fwci":8.5261,"has_fulltext":false,"cited_by_count":55,"citation_normalized_percentile":{"value":0.97838631,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"6","issue":"2","first_page":"135","last_page":"141"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9750000238418579,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7835655212402344},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7659803628921509},{"id":"https://openalex.org/keywords/conceptualization","display_name":"Conceptualization","score":0.7380430698394775},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.5278006792068481},{"id":"https://openalex.org/keywords/web-ontology-language","display_name":"Web Ontology Language","score":0.5260883569717407},{"id":"https://openalex.org/keywords/knowledge-representation-and-reasoning","display_name":"Knowledge representation and reasoning","score":0.5244039297103882},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5194182395935059},{"id":"https://openalex.org/keywords/ontology-language","display_name":"Ontology language","score":0.4954761266708374},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.48020586371421814},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.4682662785053253},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.44937068223953247},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.44889193773269653},{"id":"https://openalex.org/keywords/description-logic","display_name":"Description logic","score":0.44038277864456177},{"id":"https://openalex.org/keywords/web-resource","display_name":"Web resource","score":0.41840285062789917},{"id":"https://openalex.org/keywords/syntax","display_name":"Syntax","score":0.41307201981544495},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.41243308782577515},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3758263885974884},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.33172309398651123},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.27618467807769775},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21956735849380493}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7835655212402344},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7659803628921509},{"id":"https://openalex.org/C90734943","wikidata":"https://www.wikidata.org/wiki/Q17008777","display_name":"Conceptualization","level":2,"score":0.7380430698394775},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.5278006792068481},{"id":"https://openalex.org/C101230327","wikidata":"https://www.wikidata.org/wiki/Q826165","display_name":"Web Ontology Language","level":3,"score":0.5260883569717407},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.5244039297103882},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5194182395935059},{"id":"https://openalex.org/C61673122","wikidata":"https://www.wikidata.org/wiki/Q7095059","display_name":"Ontology language","level":3,"score":0.4954761266708374},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.48020586371421814},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.4682662785053253},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.44937068223953247},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.44889193773269653},{"id":"https://openalex.org/C102993220","wikidata":"https://www.wikidata.org/wiki/Q387196","display_name":"Description logic","level":2,"score":0.44038277864456177},{"id":"https://openalex.org/C65603577","wikidata":"https://www.wikidata.org/wiki/Q3427877","display_name":"Web resource","level":2,"score":0.41840285062789917},{"id":"https://openalex.org/C60048249","wikidata":"https://www.wikidata.org/wiki/Q37437","display_name":"Syntax","level":2,"score":0.41307201981544495},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.41243308782577515},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3758263885974884},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.33172309398651123},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.27618467807769775},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21956735849380493},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1109/titb.2002.1006301","is_oa":false,"landing_page_url":"https://doi.org/10.1109/titb.2002.1006301","pdf_url":null,"source":{"id":"https://openalex.org/S68937846","display_name":"IEEE Transactions on Information Technology in Biomedicine","issn_l":"1089-7771","issn":["1089-7771","1558-0032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Technology in Biomedicine","raw_type":"journal-article"},{"id":"pmid:12075668","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12075668","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.23.6674","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.23.6674","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://img.cs.man.ac.uk/stevens/papers/build.pdf","raw_type":"text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/3b44b67f-02c8-40b6-b00c-dca75fc64595","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/3b44b67f-02c8-40b6-b00c-dca75fc64595","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Stevens, R, Goble, C, Horrocks, I & Bechhofer, S 2002, 'Building a bioinformatics ontology using OIL', IEEE Transactions on Information Technology in Biomedicine, vol. 6, no. 2, pp. 135-141. https://doi.org/10.1109/TITB.2002.1006301","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/3b44b67f-02c8-40b6-b00c-dca75fc64595","is_oa":false,"landing_page_url":"http://dblp.uni-trier.de/rec/bibtex/journals/titb/StevensGHB02a.xml","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Stevens, R, Goble, C, Horrocks, I & Bechhofer, S 2002, 'Building a bioinformatics ontology using OIL', IEEE Transactions on Information Technology in Biomedicine, vol. 6, no. 2, pp. 135-141. https://doi.org/10.1109/TITB.2002.1006301","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1265722358","https://openalex.org/W1514949230","https://openalex.org/W1525337695","https://openalex.org/W1981021538","https://openalex.org/W2035923305","https://openalex.org/W2074639050","https://openalex.org/W2094258495","https://openalex.org/W2099899488","https://openalex.org/W2124957697","https://openalex.org/W2152888402","https://openalex.org/W2156610741","https://openalex.org/W2160948978","https://openalex.org/W6628158244"],"related_works":["https://openalex.org/W988430828","https://openalex.org/W129914909","https://openalex.org/W1506177826","https://openalex.org/W4232959661","https://openalex.org/W2399049340","https://openalex.org/W3086952825","https://openalex.org/W7091809","https://openalex.org/W1537617436","https://openalex.org/W2483665239","https://openalex.org/W32608275"],"abstract_inverted_index":{"This":[0,47,98,216,265],"paper":[1,48],"describes":[2],"the":[3,20,31,38,50,62,65,69,82,102,112,122,125,127,134,139,164,170,176,180,214,219,222,230,240,243,251,254,277],"initial":[4],"stages":[5,84],"of":[6,10,34,43,52,64,85,90,124,159,167,175,187,196,221,229,235,245,267,276],"building":[7,86],"an":[8,87],"ontology":[9,21,88,99,278,282],"bioinformatics":[11,77,92,109,113],"and":[12,40,68,111,173,179,208,253,261,269],"molecular":[13,105],"biology.":[14],"The":[15,59,150],"conceptualization":[16,161],"is":[17,49,237,271],"encoded":[18,212],"using":[19],"inference":[22],"layer":[23],"(OIL),":[24],"a":[25,53,91,206,232,280],"knowledge":[26],"representation":[27],"language":[28,67],"that":[29],"combines":[30],"modeling":[32],"style":[33],"frame-based":[35,165],"systems":[36],"with":[37],"expressiveness":[39],"reasoning":[41,174,256],"power":[42,172,257],"description":[44],"logics":[45],"(DLs).":[46],"second":[51],"pair":[54],"in":[55,108,137,153,194],"this":[56,80,154],"special":[57],"issue.":[58],"first":[60],"described":[61,224],"core":[63],"OIL":[66],"need":[70],"to":[71,74,143,182,204,259],"use":[72],"ontologies":[73],"deliver":[75],"semantic":[76],"resources.":[78,118,149],"In":[79],"paper,":[81],"early":[83],"component":[89],"resource":[93],"querying":[94],"application":[95,128],"are":[96,248],"described.":[97],"(TaO)":[100],"holds":[101],"information":[103],"about":[104],"biology":[106],"represented":[107],"resources":[110,126],"tasks":[114],"performed":[115],"over":[116],"these":[117,246],"It,":[119],"therefore,":[120],"represents":[121],"metadata":[123],"can":[129,200],"query.":[130],"It":[131],"also":[132],"manages":[133],"terminologies":[135],"used":[136,142,152,203,258],"constructing":[138],"query":[140],"plans":[141],"retrieve":[144],"instances":[145],"from":[146],"those":[147],"external":[148],"methodology":[151,223],"task":[155],"capitalizes":[156],"upon":[157],"features":[158],"OIL-The":[160],"afforded":[162],"by":[163,213,239,250],"view":[166],"OIL's":[168],"syntax;":[169],"expressive":[171],"logical":[177],"formalism;":[178],"ability":[181,217],"encode":[183],"both":[184],"handcrafted,":[185],"hierarchies":[186],"concepts,":[188],"as":[189,191],"well":[190],"defining":[192],"concepts":[193,236,247],"terms":[195],"their":[197],"properties,":[198],"which":[199],"then":[201],"be":[202],"establish":[205],"classification":[207],"infer":[209,262],"relationships":[210],"not":[211],"ontologist.":[215,241],"forms":[218],"basis":[220],"here:":[225],"For":[226],"each":[227,274],"portion":[228,275],"TaO,":[231],"basic":[233],"framework":[234],"asserted":[238],"Then,":[242],"properties":[244],"defined":[249],"ontologist":[252],"logic's":[255],"reclassify":[260],"further":[263],"relationships.":[264],"cycle":[266],"elaboration":[268],"refinement":[270],"iterated":[272],"on":[273],"until":[279],"satisfactory":[281],"has":[283],"been":[284],"created.":[285]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
