{"id":"https://openalex.org/W2170526892","doi":"https://doi.org/10.1109/titb.2002.1006298","title":"Architecture of a mediator for a bioinformatics database federation","display_name":"Architecture of a mediator for a bioinformatics database federation","publication_year":2002,"publication_date":"2002-06-01","ids":{"openalex":"https://openalex.org/W2170526892","doi":"https://doi.org/10.1109/titb.2002.1006298","mag":"2170526892","pmid":"https://pubmed.ncbi.nlm.nih.gov/12075665"},"language":"en","primary_location":{"id":"doi:10.1109/titb.2002.1006298","is_oa":false,"landing_page_url":"https://doi.org/10.1109/titb.2002.1006298","pdf_url":null,"source":{"id":"https://openalex.org/S68937846","display_name":"IEEE Transactions on Information Technology in Biomedicine","issn_l":"1089-7771","issn":["1089-7771","1558-0032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Technology in Biomedicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082908640","display_name":"Graham J. Kemp","orcid":"https://orcid.org/0000-0002-8324-9666"},"institutions":[{"id":"https://openalex.org/I195460627","display_name":"University of Aberdeen","ror":"https://ror.org/016476m91","country_code":"GB","type":"education","lineage":["https://openalex.org/I195460627"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"G.J.L. Kemp","raw_affiliation_strings":["Department of Computing Science, University of Aberdeen, King's College, Scotland, UK","Department of Computing Science, King's College, University of Aberdeen, Aberdeen, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, University of Aberdeen, King's College, Scotland, UK","institution_ids":[]},{"raw_affiliation_string":"Department of Computing Science, King's College, University of Aberdeen, Aberdeen, UK","institution_ids":["https://openalex.org/I195460627"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015977525","display_name":"Nicos Angelopoulos","orcid":"https://orcid.org/0000-0002-7507-9177"},"institutions":[{"id":"https://openalex.org/I195460627","display_name":"University of Aberdeen","ror":"https://ror.org/016476m91","country_code":"GB","type":"education","lineage":["https://openalex.org/I195460627"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"N. Angelopoulos","raw_affiliation_strings":["Department of Computing Science, King's College, University of Aberdeen, Aberdeen, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, King's College, University of Aberdeen, Aberdeen, UK","institution_ids":["https://openalex.org/I195460627"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080320634","display_name":"Peter Gray","orcid":"https://orcid.org/0000-0003-1391-4795"},"institutions":[{"id":"https://openalex.org/I195460627","display_name":"University of Aberdeen","ror":"https://ror.org/016476m91","country_code":"GB","type":"education","lineage":["https://openalex.org/I195460627"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"P.M.D. Gray","raw_affiliation_strings":["Department of Computing Science, King's College, University of Aberdeen, Aberdeen, UK"],"affiliations":[{"raw_affiliation_string":"Department of Computing Science, King's College, University of Aberdeen, Aberdeen, UK","institution_ids":["https://openalex.org/I195460627"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5082908640"],"corresponding_institution_ids":["https://openalex.org/I195460627"],"apc_list":null,"apc_paid":null,"fwci":1.3855,"has_fulltext":false,"cited_by_count":16,"citation_normalized_percentile":{"value":0.85922449,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"6","issue":"2","first_page":"116","last_page":"122"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10317","display_name":"Advanced Database Systems and Queries","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.994700014591217,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7862594127655029},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.6470268964767456},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5816423892974854},{"id":"https://openalex.org/keywords/distributed-database","display_name":"Distributed database","score":0.5344312191009521},{"id":"https://openalex.org/keywords/architecture","display_name":"Architecture","score":0.47447115182876587},{"id":"https://openalex.org/keywords/relational-database","display_name":"Relational database","score":0.4312538802623749},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.42893967032432556},{"id":"https://openalex.org/keywords/database-schema","display_name":"Database schema","score":0.4261336028575897},{"id":"https://openalex.org/keywords/database-design","display_name":"Database design","score":0.33219510316848755},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3022887110710144}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7862594127655029},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.6470268964767456},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5816423892974854},{"id":"https://openalex.org/C70061542","wikidata":"https://www.wikidata.org/wiki/Q989016","display_name":"Distributed database","level":2,"score":0.5344312191009521},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.47447115182876587},{"id":"https://openalex.org/C5655090","wikidata":"https://www.wikidata.org/wiki/Q192588","display_name":"Relational database","level":2,"score":0.4312538802623749},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.42893967032432556},{"id":"https://openalex.org/C30775581","wikidata":"https://www.wikidata.org/wiki/Q632285","display_name":"Database schema","level":3,"score":0.4261336028575897},{"id":"https://openalex.org/C148840519","wikidata":"https://www.wikidata.org/wiki/Q1049878","display_name":"Database design","level":2,"score":0.33219510316848755},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3022887110710144},{"id":"https://openalex.org/C142362112","wikidata":"https://www.wikidata.org/wiki/Q735","display_name":"Art","level":0,"score":0.0},{"id":"https://openalex.org/C153349607","wikidata":"https://www.wikidata.org/wiki/Q36649","display_name":"Visual arts","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003195","descriptor_name":"Computer Communication Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003628","descriptor_name":"Database Management Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003661","descriptor_name":"Decision Support Techniques","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1109/titb.2002.1006298","is_oa":false,"landing_page_url":"https://doi.org/10.1109/titb.2002.1006298","pdf_url":null,"source":{"id":"https://openalex.org/S68937846","display_name":"IEEE Transactions on Information Technology in Biomedicine","issn_l":"1089-7771","issn":["1089-7771","1558-0032"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Technology in Biomedicine","raw_type":"journal-article"},{"id":"pmid:12075665","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12075665","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on information technology in biomedicine : a publication of the IEEE Engineering in Medicine and Biology Society","raw_type":null},{"id":"pmh:oai:publications.lib.chalmers.se:1628","is_oa":false,"landing_page_url":"http://publications.lib.chalmers.se/publication/1628-architecture-of-a-mediator-for-a-bioinformatics-database-federation","pdf_url":null,"source":{"id":"https://openalex.org/S4377196470","display_name":"Chalmers Publication Library (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text.Article.Journal.PeerReviewed"},{"id":"pmh:oai:research.chalmers.se:1628","is_oa":false,"landing_page_url":"https://research.chalmers.se/en/publication/1628","pdf_url":null,"source":{"id":"https://openalex.org/S4306402469","display_name":"Chalmers Research (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.550000011920929,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W21125320","https://openalex.org/W1484990431","https://openalex.org/W1501149053","https://openalex.org/W1524870477","https://openalex.org/W1556896647","https://openalex.org/W1924184621","https://openalex.org/W1937367249","https://openalex.org/W1960069969","https://openalex.org/W2009299050","https://openalex.org/W2016758618","https://openalex.org/W2018054118","https://openalex.org/W2065336344","https://openalex.org/W2094010958","https://openalex.org/W2132731568","https://openalex.org/W2141824507","https://openalex.org/W2146947112","https://openalex.org/W2147869465","https://openalex.org/W2157787633","https://openalex.org/W2158358034","https://openalex.org/W2161666572","https://openalex.org/W2289666534","https://openalex.org/W6683752738"],"related_works":["https://openalex.org/W2153455914","https://openalex.org/W325713583","https://openalex.org/W1501673548","https://openalex.org/W1905261690","https://openalex.org/W2591891926","https://openalex.org/W2512945146","https://openalex.org/W2460926837","https://openalex.org/W2031508292","https://openalex.org/W2079588361","https://openalex.org/W2000469556"],"abstract_inverted_index":{"Developments":[0],"in":[1,10,20,142,164,170],"our":[2,21,93],"ability":[3],"to":[4,17,66,92,120],"integrate":[5],"and":[6,38,80,128,139,150,167],"analyze":[7],"data":[8,13,36,40,59,126,161,169],"held":[9,162],"existing":[11,77,124],"heterogeneous":[12,67],"resources":[14,37,127],"can":[15],"lead":[16],"an":[18,155],"increase":[19],"understanding":[22],"of":[23,75,82,99,115,136,157],"biological":[24,69],"function":[25],"at":[26],"all":[27],"levels.":[28],"However,":[29],"supporting":[30],"ad":[31],"hoc":[32],"queries":[33],"across":[34],"multiple":[35],"correlating":[39],"retrieved":[41],"from":[42,112],"these":[43],"is":[44,96],"still":[45],"difficult.":[46],"To":[47],"address":[48],"this,":[49],"we":[50],"are":[51],"building":[52],"a":[53,104,108],"mediator":[54,130],"based":[55],"on":[56,88],"the":[57,76,83,97,113,116,123,129,134],"functional":[58],"model":[60],"database,":[61],"P/FDM,":[62],"which":[63],"integrates":[64],"access":[65],"distributed":[68],"databases.":[70],"Our":[71],"architecture":[72,106],"makes":[73],"use":[74,98,114,135],"search":[78],"capabilities":[79],"indexes":[81],"underlying":[84],"databases,":[85],"without":[86],"infringing":[87],"their":[89],"autonomy.":[90],"Central":[91],"design":[94],"philosophy":[95],"schemas.":[100],"We":[101,132,153],"have":[102],"adopted":[103],"federated":[105],"with":[107],"five-level":[109],"schema,":[110],"arising":[111],"ANSI-SPARC":[117],"three-level":[118],"schema":[119],"describe":[121,133],"both":[122],"autonomous":[125],"itself.":[131],"mapping":[137],"functions":[138],"list":[140],"comprehensions":[141],"query":[143],"splitting,":[144],"producing":[145],"execution":[146],"plans,":[147],"code":[148],"generation,":[149],"result":[151],"fusion.":[152],"give":[154],"example":[156],"cross-database":[158],"querying":[159],"involving":[160],"locally":[163],"P/FDM":[165],"systems":[166],"external":[168],"SRS.":[171]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
