{"id":"https://openalex.org/W4408145725","doi":"https://doi.org/10.1109/tit.2025.3545662","title":"On the Capacity of DNA Labeling","display_name":"On the Capacity of DNA Labeling","publication_year":2025,"publication_date":"2025-03-04","ids":{"openalex":"https://openalex.org/W4408145725","doi":"https://doi.org/10.1109/tit.2025.3545662"},"language":"en","primary_location":{"id":"doi:10.1109/tit.2025.3545662","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tit.2025.3545662","pdf_url":null,"source":{"id":"https://openalex.org/S4502562","display_name":"IEEE Transactions on Information Theory","issn_l":"0018-9448","issn":["0018-9448","1557-9654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Theory","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091957275","display_name":"Dganit Hanania","orcid":"https://orcid.org/0009-0005-5976-2047"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Dganit Hanania","raw_affiliation_strings":["Henry and Marilyn Taub Faculty of Computer Science, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","Henry and Marilyn Taub Faculty of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel"],"raw_orcid":"https://orcid.org/0009-0005-5976-2047","affiliations":[{"raw_affiliation_string":"Henry and Marilyn Taub Faculty of Computer Science, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Henry and Marilyn Taub Faculty of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070410810","display_name":"Daniella Bar-Lev","orcid":"https://orcid.org/0000-0001-6766-1450"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Daniella Bar-Lev","raw_affiliation_strings":["Henry and Marilyn Taub Faculty of Computer Science, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","Henry and Marilyn Taub Faculty of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0001-6766-1450","affiliations":[{"raw_affiliation_string":"Henry and Marilyn Taub Faculty of Computer Science, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Henry and Marilyn Taub Faculty of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062726300","display_name":"Yevgeni Nogin","orcid":"https://orcid.org/0000-0001-7484-727X"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yevgeni Nogin","raw_affiliation_strings":["Russel Berrie Nanotechnology Institute, Technion, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0001-7484-727X","affiliations":[{"raw_affiliation_string":"Russel Berrie Nanotechnology Institute, Technion, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063388398","display_name":"Yoav Shechtman","orcid":"https://orcid.org/0000-0001-8498-5203"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Yoav Shechtman","raw_affiliation_strings":["Department of Biomedical Engineering, and the Lorry I. Lokey Center for Life Sciences and Engineering, Russel Berrie Nanotechnology Institute, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","Russel Berrie Nanotechnology Instituteand, Israel"],"raw_orcid":"https://orcid.org/0000-0001-8498-5203","affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, and the Lorry I. Lokey Center for Life Sciences and Engineering, Russel Berrie Nanotechnology Institute, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Russel Berrie Nanotechnology Instituteand, Israel","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021586372","display_name":"Eitan Yaakobi","orcid":"https://orcid.org/0000-0002-9851-5234"},"institutions":[{"id":"https://openalex.org/I174306211","display_name":"Technion \u2013 Israel Institute of Technology","ror":"https://ror.org/03qryx823","country_code":"IL","type":"education","lineage":["https://openalex.org/I174306211"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Eitan Yaakobi","raw_affiliation_strings":["Henry and Marilyn Taub Faculty of Computer Science, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","Henry and Marilyn Taub Faculty of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel"],"raw_orcid":"https://orcid.org/0000-0002-9851-5234","affiliations":[{"raw_affiliation_string":"Henry and Marilyn Taub Faculty of Computer Science, Technion&#x2014;Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]},{"raw_affiliation_string":"Henry and Marilyn Taub Faculty of Computer Science, Technion-Israel Institute of Technology, Haifa, Israel","institution_ids":["https://openalex.org/I174306211"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.8537,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.92103449,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":98},"biblio":{"volume":"71","issue":"5","first_page":"3457","last_page":"3472"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12749","display_name":"Race, Genetics, and Society","score":0.47859999537467957,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12749","display_name":"Race, Genetics, and Society","score":0.47859999537467957,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11426","display_name":"Genetically Modified Organisms Research","score":0.47620001435279846,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.4659000039100647,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.5392083525657654},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.495641827583313},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.34829872846603394},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.2793095111846924},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.19182777404785156},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.11189678311347961}],"concepts":[{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.5392083525657654},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.495641827583313},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34829872846603394},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2793095111846924},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.19182777404785156},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.11189678311347961}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tit.2025.3545662","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tit.2025.3545662","pdf_url":null,"source":{"id":"https://openalex.org/S4502562","display_name":"IEEE Transactions on Information Theory","issn_l":"0018-9448","issn":["0018-9448","1557-9654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Theory","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":17,"referenced_works":["https://openalex.org/W1990002727","https://openalex.org/W2019374755","https://openalex.org/W2028955838","https://openalex.org/W2043890495","https://openalex.org/W2045373434","https://openalex.org/W2051681317","https://openalex.org/W2057437773","https://openalex.org/W2111183991","https://openalex.org/W2563260368","https://openalex.org/W2570098784","https://openalex.org/W2581920909","https://openalex.org/W2900583157","https://openalex.org/W2947049608","https://openalex.org/W3012327042","https://openalex.org/W3138196164","https://openalex.org/W3167479850","https://openalex.org/W4386075118"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"<italic":[0,35,40,90,152],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[1,36,41,57,91,153,168],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">DNA":[2],"labeling</i>":[3],"is":[4,33,45,52,86,95,113],"a":[5,30,55,120,186],"powerful":[6],"tool":[7],"in":[8,63,76,158],"molecular":[9,25],"biology":[10],"and":[11,19,44,123],"biotechnology":[12],"that":[13,102,155,181],"allows":[14],"for":[15,115,126],"the":[16,24,49,70,73,77,89,98,136,162,177],"visualization,":[17],"detection,":[18],"study":[20,88],"of":[21,72,83,119,140,142,150,166,189,191],"DNA":[22,31,78],"at":[23],"level.":[26],"Under":[27],"this":[28,84,107],"paradigm,":[29],"molecule":[32],"being":[34],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">labeled</i>":[37],"by":[38],"specific":[39],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">k</i>":[42],"patterns":[43],"then":[46],"imaged.":[47],"Then,":[48],"resulting":[50],"image":[51],"modeled":[53],"as":[54,97,131],"<inline-formula":[56,167],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">":[58,169],"<tex-math":[59,170],"notation=\"LaTeX\">$(k+1)$":[60],"</tex-math></inline-formula>-ary":[61],"sequence":[62],"which":[64,94],"any":[65,117,148],"non-zero":[66],"symbol":[67],"indicates":[68],"on":[69],"appearance":[71],"corresponding":[74],"label":[75,122],"molecule.":[79],"The":[80,110],"primary":[81],"goal":[82],"work":[85],"to":[87,160],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">labeling":[92],"capacity</i>,":[93],"defined":[96],"maximal":[99,178],"information":[100],"rate":[101],"can":[103,182],"be":[104,183],"obtained":[105],"using":[106,185],"labeling":[108,111,164,179],"process.":[109],"capacity":[112,165,180],"computed":[114],"almost":[116],"pattern":[118],"single":[121],"several":[124],"results":[125],"multiple":[127],"labels":[128,141,190],"are":[129,156],"provided":[130],"well.":[132],"Moreover,":[133],"we":[134,175],"provide":[135],"optimal":[137],"minimal":[138],"number":[139,188],"length":[143,192],"one":[144],"or":[145],"two,":[146],"over":[147],"alphabet":[149],"size":[151],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">q</i>,":[154],"needed":[157],"order":[159],"achieve":[161],"maximum":[163],"notation=\"LaTeX\">$\\log":[171],"_{2}(q)$":[172],"</tex-math></inline-formula>.":[173],"Lastly,":[174],"discuss":[176],"achieved":[184],"certain":[187],"two.":[193]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":2}],"updated_date":"2026-06-11T09:08:48.828518","created_date":"2025-10-10T00:00:00"}
