{"id":"https://openalex.org/W3216171223","doi":"https://doi.org/10.1109/tit.2022.3206527","title":"Concatenated Codes for Multiple Reads of a DNA Sequence","display_name":"Concatenated Codes for Multiple Reads of a DNA Sequence","publication_year":2022,"publication_date":"2022-09-14","ids":{"openalex":"https://openalex.org/W3216171223","doi":"https://doi.org/10.1109/tit.2022.3206527","mag":"3216171223"},"language":"en","primary_location":{"id":"doi:10.1109/tit.2022.3206527","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tit.2022.3206527","pdf_url":null,"source":{"id":"https://openalex.org/S4502562","display_name":"IEEE Transactions on Information Theory","issn_l":"0018-9448","issn":["0018-9448","1557-9654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Theory","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068655947","display_name":"Issam Maarouf","orcid":"https://orcid.org/0000-0003-4791-4515"},"institutions":[{"id":"https://openalex.org/I2799829267","display_name":"Simula Research Laboratory","ror":"https://ror.org/00vn06n10","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2799829267"]},{"id":"https://openalex.org/I4387153661","display_name":"Simula UiB","ror":"https://ror.org/05kmggt55","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I2799829267","https://openalex.org/I4387153661","https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Issam Maarouf","raw_affiliation_strings":["Simula UiB, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0003-4791-4515","affiliations":[{"raw_affiliation_string":"Simula UiB, Bergen, Norway","institution_ids":["https://openalex.org/I2799829267","https://openalex.org/I4387153661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049949510","display_name":"Andreas Lenz","orcid":"https://orcid.org/0000-0002-0310-7706"},"institutions":[{"id":"https://openalex.org/I2799829267","display_name":"Simula Research Laboratory","ror":"https://ror.org/00vn06n10","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2799829267"]},{"id":"https://openalex.org/I4387153661","display_name":"Simula UiB","ror":"https://ror.org/05kmggt55","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I2799829267","https://openalex.org/I4387153661","https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Andreas Lenz","raw_affiliation_strings":["Simula UiB, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0002-0310-7706","affiliations":[{"raw_affiliation_string":"Simula UiB, Bergen, Norway","institution_ids":["https://openalex.org/I2799829267","https://openalex.org/I4387153661"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034799688","display_name":"Lorenz Welter","orcid":"https://orcid.org/0000-0002-5135-6731"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Lorenz Welter","raw_affiliation_strings":["Institute for Communications Engineering, Technical University of Munich, Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5135-6731","affiliations":[{"raw_affiliation_string":"Institute for Communications Engineering, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041962883","display_name":"Antonia Wachter-Zeh","orcid":"https://orcid.org/0000-0002-5174-1947"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Antonia Wachter-Zeh","raw_affiliation_strings":["Institute for Communications Engineering, Technical University of Munich, Munich, Germany"],"raw_orcid":"https://orcid.org/0000-0002-5174-1947","affiliations":[{"raw_affiliation_string":"Institute for Communications Engineering, Technical University of Munich, Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090738616","display_name":"Eirik Rosnes","orcid":"https://orcid.org/0000-0001-8236-6601"},"institutions":[{"id":"https://openalex.org/I2799829267","display_name":"Simula Research Laboratory","ror":"https://ror.org/00vn06n10","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2799829267"]},{"id":"https://openalex.org/I4387153661","display_name":"Simula UiB","ror":"https://ror.org/05kmggt55","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I2799829267","https://openalex.org/I4387153661","https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Eirik Rosnes","raw_affiliation_strings":["Simula UiB, Bergen, Norway"],"raw_orcid":"https://orcid.org/0000-0001-8236-6601","affiliations":[{"raw_affiliation_string":"Simula UiB, Bergen, Norway","institution_ids":["https://openalex.org/I2799829267","https://openalex.org/I4387153661"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5014522913","display_name":"Alexandre Graell i Amat","orcid":"https://orcid.org/0000-0002-5725-869X"},"institutions":[{"id":"https://openalex.org/I2799829267","display_name":"Simula Research Laboratory","ror":"https://ror.org/00vn06n10","country_code":"NO","type":"facility","lineage":["https://openalex.org/I2799829267"]},{"id":"https://openalex.org/I4387153661","display_name":"Simula UiB","ror":"https://ror.org/05kmggt55","country_code":null,"type":"nonprofit","lineage":["https://openalex.org/I2799829267","https://openalex.org/I4387153661","https://openalex.org/I4432739"]},{"id":"https://openalex.org/I66862912","display_name":"Chalmers University of Technology","ror":"https://ror.org/040wg7k59","country_code":"SE","type":"education","lineage":["https://openalex.org/I66862912"]}],"countries":["NO","SE"],"is_corresponding":false,"raw_author_name":"Alexandre Graell i Amat","raw_affiliation_strings":["Simula UiB, Bergen, Norway","Department of Electrical Engineering, Chalmers University of Technology, Gothenburg, Sweden"],"raw_orcid":"https://orcid.org/0000-0002-5725-869X","affiliations":[{"raw_affiliation_string":"Simula UiB, Bergen, Norway","institution_ids":["https://openalex.org/I2799829267","https://openalex.org/I4387153661"]},{"raw_affiliation_string":"Department of Electrical Engineering, Chalmers University of Technology, Gothenburg, Sweden","institution_ids":["https://openalex.org/I66862912"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5068655947"],"corresponding_institution_ids":["https://openalex.org/I2799829267","https://openalex.org/I4387153661"],"apc_list":null,"apc_paid":null,"fwci":1.8227,"has_fulltext":false,"cited_by_count":22,"citation_normalized_percentile":{"value":0.85108304,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"69","issue":"2","first_page":"910","last_page":"927"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12029","display_name":"DNA and Biological Computing","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10207","display_name":"Advanced biosensing and bioanalysis techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/concatenated-error-correction-code","display_name":"Concatenated error correction code","score":0.6651983857154846},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6413403153419495},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.6095620393753052},{"id":"https://openalex.org/keywords/decoding-methods","display_name":"Decoding methods","score":0.6069146394729614},{"id":"https://openalex.org/keywords/convolutional-code","display_name":"Convolutional code","score":0.5808740854263306},{"id":"https://openalex.org/keywords/code-word","display_name":"Code word","score":0.4756034314632416},{"id":"https://openalex.org/keywords/serial-concatenated-convolutional-codes","display_name":"Serial concatenated convolutional codes","score":0.47466614842414856},{"id":"https://openalex.org/keywords/block-code","display_name":"Block code","score":0.428857684135437},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.4134898781776428}],"concepts":[{"id":"https://openalex.org/C78944582","wikidata":"https://www.wikidata.org/wiki/Q5158264","display_name":"Concatenated error correction code","level":4,"score":0.6651983857154846},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6413403153419495},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.6095620393753052},{"id":"https://openalex.org/C57273362","wikidata":"https://www.wikidata.org/wiki/Q576722","display_name":"Decoding methods","level":2,"score":0.6069146394729614},{"id":"https://openalex.org/C157899210","wikidata":"https://www.wikidata.org/wiki/Q1395022","display_name":"Convolutional code","level":3,"score":0.5808740854263306},{"id":"https://openalex.org/C153207627","wikidata":"https://www.wikidata.org/wiki/Q863873","display_name":"Code word","level":3,"score":0.4756034314632416},{"id":"https://openalex.org/C33529081","wikidata":"https://www.wikidata.org/wiki/Q18378194","display_name":"Serial concatenated convolutional codes","level":5,"score":0.47466614842414856},{"id":"https://openalex.org/C157125643","wikidata":"https://www.wikidata.org/wiki/Q884707","display_name":"Block code","level":3,"score":0.428857684135437},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.4134898781776428}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tit.2022.3206527","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tit.2022.3206527","pdf_url":null,"source":{"id":"https://openalex.org/S4502562","display_name":"IEEE Transactions on Information Theory","issn_l":"0018-9448","issn":["0018-9448","1557-9654"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Information Theory","raw_type":"journal-article"},{"id":"pmh:oai:research.chalmers.se:534638","is_oa":false,"landing_page_url":"https://research.chalmers.se/en/publication/534638","pdf_url":null,"source":{"id":"https://openalex.org/S4306402469","display_name":"Chalmers Research (Chalmers University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66862912","host_organization_name":"Chalmers University of Technology","host_organization_lineage":["https://openalex.org/I66862912"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4225000860","display_name":null,"funder_award_id":"801434","funder_id":"https://openalex.org/F4320338335","funder_display_name":"H2020 European Research Council"},{"id":"https://openalex.org/G7430070275","display_name":null,"funder_award_id":"2020-03687","funder_id":"https://openalex.org/F4320322581","funder_display_name":"Vetenskapsr\u00e5det"}],"funders":[{"id":"https://openalex.org/F4320322581","display_name":"Vetenskapsr\u00e5det","ror":"https://ror.org/03zttf063"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":71,"referenced_works":["https://openalex.org/W188530540","https://openalex.org/W1506285408","https://openalex.org/W1522919591","https://openalex.org/W1647671624","https://openalex.org/W1946587648","https://openalex.org/W1968626661","https://openalex.org/W1969151232","https://openalex.org/W1999116222","https://openalex.org/W2010838795","https://openalex.org/W2025383314","https://openalex.org/W2026320281","https://openalex.org/W2027891831","https://openalex.org/W2040613047","https://openalex.org/W2046112356","https://openalex.org/W2061475625","https://openalex.org/W2092334739","https://openalex.org/W2097096299","https://openalex.org/W2103353540","https://openalex.org/W2106045225","https://openalex.org/W2114487425","https://openalex.org/W2117365084","https://openalex.org/W2122848641","https://openalex.org/W2123164976","https://openalex.org/W2127006172","https://openalex.org/W2132926880","https://openalex.org/W2135245667","https://openalex.org/W2139490030","https://openalex.org/W2141042115","https://openalex.org/W2144362290","https://openalex.org/W2145570573","https://openalex.org/W2150498905","https://openalex.org/W2151961505","https://openalex.org/W2157477135","https://openalex.org/W2162980030","https://openalex.org/W2163619651","https://openalex.org/W2165808853","https://openalex.org/W2167082268","https://openalex.org/W2333320475","https://openalex.org/W2471091339","https://openalex.org/W2592122940","https://openalex.org/W2753396470","https://openalex.org/W2788257106","https://openalex.org/W2902553150","https://openalex.org/W2951269465","https://openalex.org/W2962809499","https://openalex.org/W2975272736","https://openalex.org/W2976050422","https://openalex.org/W2976279718","https://openalex.org/W2989600529","https://openalex.org/W3009659041","https://openalex.org/W3014254451","https://openalex.org/W3015526058","https://openalex.org/W3028579427","https://openalex.org/W3080465559","https://openalex.org/W3082927884","https://openalex.org/W3085477517","https://openalex.org/W3093968171","https://openalex.org/W3128220280","https://openalex.org/W3128277769","https://openalex.org/W3132407653","https://openalex.org/W3175367689","https://openalex.org/W3190296759","https://openalex.org/W3198709941","https://openalex.org/W3204888059","https://openalex.org/W4221106659","https://openalex.org/W4231224824","https://openalex.org/W4281668376","https://openalex.org/W4285719527","https://openalex.org/W6630204531","https://openalex.org/W6636915900","https://openalex.org/W7064777746"],"related_works":["https://openalex.org/W1972318883","https://openalex.org/W2534582423","https://openalex.org/W2121305283","https://openalex.org/W2015741799","https://openalex.org/W2168862745","https://openalex.org/W3114701954","https://openalex.org/W1944343091","https://openalex.org/W792671342","https://openalex.org/W2075640816","https://openalex.org/W2114921205"],"abstract_inverted_index":{"Decoding":[0],"sequences":[1,120,145],"that":[2,125],"stem":[3],"from":[4,68],"multiple":[5,69,143],"transmissions":[6],"of":[7,21,116,131,141,148,174],"a":[8,18,34,46,56,80,88,123,162],"codeword":[9],"over":[10],"an":[11,39,51],"insertion,":[12],"deletion,":[13],"and":[14,49,77,121,152,184],"substitution":[15],"channel":[16,78],"is":[17,126],"critical":[19],"component":[20],"efficient":[22],"deoxyribonucleic":[23],"acid":[24],"(DNA)":[25],"data":[26],"storage":[27],"systems.":[28],"In":[29,166],"this":[30],"paper,":[31],"we":[32,137,168],"consider":[33],"concatenated":[35],"coding":[36,177],"scheme":[37,178],"with":[38,128],"outer":[40,185],"nonbinary":[41],"low-density":[42],"parity-check":[43],"code":[44,48,54,76],"or":[45,55],"polar":[47],"either":[50],"inner":[52,75,183],"convolutional":[53],"time-varying":[57],"block":[58],"code.":[59],"We":[60,155],"propose":[61],"two":[62],"novel":[63],"decoding":[64,101,142],"algorithms":[65],"for":[66],"inference":[67],"received":[70,103,119,144,164],"sequences,":[71,104],"both":[72,181],"combining":[73,113],"the":[74,96,102,106,110,114,129,134,139,172,175,182],"to":[79,85,161],"joint":[81],"hidden":[82],"Markov":[83],"model":[84],"infer":[86],"symbolwise":[87],"posteriori":[89],"probabilities":[90],"(APPs).":[91],"The":[92],"first":[93],"decoder":[94,108],"computes":[95],"exact":[97],"APPs":[98,111],"by":[99,112,146,179],"jointly":[100],"whereas":[105],"second":[107],"approximates":[109],"results":[115],"separately":[117],"decoded":[118],"has":[122],"complexity":[124],"linear":[127],"number":[130],"sequences.":[132],"Using":[133],"proposed":[135],"algorithms,":[136],"evaluate":[138],"performance":[140,158,173],"means":[147],"achievable":[149],"information":[150],"rates":[151],"Monte-Carlo":[153],"simulations.":[154],"show":[156],"significant":[157],"gains":[159],"compared":[160],"single":[163],"sequence.":[165],"addition,":[167],"succeed":[169],"in":[170],"improving":[171],"aforementioned":[176],"optimizing":[180],"codes.":[186]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":8},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
