{"id":"https://openalex.org/W2999435349","doi":"https://doi.org/10.1109/tip.2020.2964515","title":"A Recurrent Neural Network for Particle Tracking in Microscopy Images Using Future Information, Track Hypotheses, and Multiple Detections","display_name":"A Recurrent Neural Network for Particle Tracking in Microscopy Images Using Future Information, Track Hypotheses, and Multiple Detections","publication_year":2020,"publication_date":"2020-01-01","ids":{"openalex":"https://openalex.org/W2999435349","doi":"https://doi.org/10.1109/tip.2020.2964515","mag":"2999435349","pmid":"https://pubmed.ncbi.nlm.nih.gov/31940539"},"language":"en","primary_location":{"id":"doi:10.1109/tip.2020.2964515","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2020.2964515","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005314411","display_name":"Roman Spilger","orcid":"https://orcid.org/0000-0002-3049-7375"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Roman Spilger","raw_affiliation_strings":["Biomedical Computer Vision Group, Heidelberg University, BioQuant, IPMB, DKFZ Heidelberg, Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0002-3049-7375","affiliations":[{"raw_affiliation_string":"Biomedical Computer Vision Group, Heidelberg University, BioQuant, IPMB, DKFZ Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045409518","display_name":"Andrea Imle","orcid":"https://orcid.org/0000-0002-8740-1477"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]},{"id":"https://openalex.org/I4210138560","display_name":"European Molecular Biology Laboratory","ror":"https://ror.org/03mstc592","country_code":"DE","type":"government","lineage":["https://openalex.org/I4210138560"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andrea Imle","raw_affiliation_strings":["Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany","Department of Infectious Diseases, Integrative Virology, University Hospital Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cell Biology and Biophysics Unit, European Molecular Biology Laboratory, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210138560"]},{"raw_affiliation_string":"Department of Infectious Diseases, Integrative Virology, University Hospital Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100447446","display_name":"Jiyoung Lee","orcid":"https://orcid.org/0000-0002-3726-9260"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]},{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ji-Young Lee","raw_affiliation_strings":["Department of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany","German Center for Infection Research (DZIF), Heidelberg Partner Site, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Center for Infection Research (DZIF), Heidelberg Partner Site, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210115305"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091231669","display_name":"B\u00e1rbara M\u00fcller","orcid":"https://orcid.org/0000-0001-5726-5585"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Barbara Muller","raw_affiliation_strings":["Department of Infectious Diseases, Virology, University Hospital Heidelberg, Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5726-5585","affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, Virology, University Hospital Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011493742","display_name":"O. Fackler","orcid":"https://orcid.org/0000-0003-2982-4209"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Oliver T. Fackler","raw_affiliation_strings":["Department of Infectious Diseases, Integrative Virology, University Hospital Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, Integrative Virology, University Hospital Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015740141","display_name":"Ralf Bartenschlager","orcid":"https://orcid.org/0000-0001-5601-9307"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]},{"id":"https://openalex.org/I4210115305","display_name":"German Center for Infection Research","ror":"https://ror.org/028s4q594","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210115305","https://openalex.org/I4405256427"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ralf Bartenschlager","raw_affiliation_strings":["Department of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany","German Center for Infection Research (DZIF), Heidelberg Partner Site, Heidelberg, Germany"],"raw_orcid":"https://orcid.org/0000-0001-5601-9307","affiliations":[{"raw_affiliation_string":"Department of Infectious Diseases, Molecular Virology, University Hospital Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I2802164966","https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Center for Infection Research (DZIF), Heidelberg Partner Site, Heidelberg, Germany","institution_ids":["https://openalex.org/I4210115305"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105166471","display_name":"Karl Rohr","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Karl Rohr","raw_affiliation_strings":["Biomedical Computer Vision Group, Heidelberg University, BioQuant, IPMB, DKFZ Heidelberg, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Computer Vision Group, Heidelberg University, BioQuant, IPMB, DKFZ Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5005314411"],"corresponding_institution_ids":["https://openalex.org/I223822909"],"apc_list":null,"apc_paid":null,"fwci":5.6567,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.95794892,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"29","issue":null,"first_page":"3681","last_page":"3694"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.992900013923645,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.7851234674453735},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7247432470321655},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.7113750576972961},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5710867047309875},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.5654069781303406},{"id":"https://openalex.org/keywords/track","display_name":"Track (disk drive)","score":0.5547616481781006},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5531225204467773},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.47847601771354675},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.4511987566947937},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.4073472321033478},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.351399302482605}],"concepts":[{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.7851234674453735},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7247432470321655},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7113750576972961},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5710867047309875},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.5654069781303406},{"id":"https://openalex.org/C89992363","wikidata":"https://www.wikidata.org/wiki/Q5961558","display_name":"Track (disk drive)","level":2,"score":0.5547616481781006},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5531225204467773},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.47847601771354675},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.4511987566947937},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.4073472321033478},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.351399302482605},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tip.2020.2964515","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2020.2964515","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},{"id":"pmid:31940539","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/31940539","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on image processing : a publication of the IEEE Signal Processing Society","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2575772051","display_name":null,"funder_award_id":"240245660","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7044131494","display_name":null,"funder_award_id":"SPP 2202","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W149540474","https://openalex.org/W1522301498","https://openalex.org/W1965510849","https://openalex.org/W1973421894","https://openalex.org/W1982221523","https://openalex.org/W1985928875","https://openalex.org/W2018863717","https://openalex.org/W2029137841","https://openalex.org/W2034847269","https://openalex.org/W2037947871","https://openalex.org/W2047080266","https://openalex.org/W2057096287","https://openalex.org/W2064675550","https://openalex.org/W2069981183","https://openalex.org/W2077251032","https://openalex.org/W2079735306","https://openalex.org/W2101916976","https://openalex.org/W2103706175","https://openalex.org/W2105916176","https://openalex.org/W2113127660","https://openalex.org/W2127923214","https://openalex.org/W2129140439","https://openalex.org/W2131586328","https://openalex.org/W2137360883","https://openalex.org/W2139688603","https://openalex.org/W2143623375","https://openalex.org/W2171029615","https://openalex.org/W2345010043","https://openalex.org/W2397134616","https://openalex.org/W2529052661","https://openalex.org/W2550458994","https://openalex.org/W2557641257","https://openalex.org/W2579024533","https://openalex.org/W2579238278","https://openalex.org/W2592929672","https://openalex.org/W2621053731","https://openalex.org/W2678677036","https://openalex.org/W2769192984","https://openalex.org/W2790015441","https://openalex.org/W2790879725","https://openalex.org/W2806940272","https://openalex.org/W2888107234","https://openalex.org/W2891635801","https://openalex.org/W2895071559","https://openalex.org/W2919115771","https://openalex.org/W2953281923","https://openalex.org/W2955521425","https://openalex.org/W2958184887","https://openalex.org/W2960940172","https://openalex.org/W2963063317","https://openalex.org/W2963313370","https://openalex.org/W2963977416","https://openalex.org/W2964121744","https://openalex.org/W6631190155","https://openalex.org/W6703780166","https://openalex.org/W6712447211","https://openalex.org/W6748793885"],"related_works":["https://openalex.org/W17155033","https://openalex.org/W3207760230","https://openalex.org/W1496222301","https://openalex.org/W1590307681","https://openalex.org/W2536018345","https://openalex.org/W4312814274","https://openalex.org/W4285370786","https://openalex.org/W2296488620","https://openalex.org/W2358353312","https://openalex.org/W2353836703"],"abstract_inverted_index":{"Automatic":[0],"tracking":[1,27],"of":[2,16,60,128,134,147],"particles":[3],"in":[4,43],"time-lapse":[5],"fluorescence":[6,143],"microscopy":[7,144],"images":[8],"is":[9,63,118],"essential":[10],"for":[11,121],"quantifying":[12],"the":[13,58,72,126,135,154],"dynamic":[14],"behavior":[15],"subcellular":[17],"structures":[18],"and":[19,40,46,57,78,108],"virus":[20,148],"structures.":[21,149],"We":[22,124],"introduce":[23],"a":[24,31],"novel":[25],"particle":[26],"approach":[28,130,156],"based":[29],"on":[30],"deep":[32],"recurrent":[33],"neural":[34],"network":[35,73,122],"architecture":[36],"that":[37,92,153],"exploits":[38],"past":[39],"future":[41,88],"information":[42,93],"both":[44],"forward":[45],"backward":[47],"direction.":[48],"Assignment":[49],"probabilities":[50,68],"are":[51,69,85,112],"determined":[52,70],"jointly":[53],"across":[54],"multiple":[55],"detections,":[56],"probability":[59],"missing":[61],"detections":[62],"computed.":[64],"In":[65],"addition,":[66],"existence":[67],"by":[71],"to":[74,87,101],"handle":[75],"track":[76,83],"initiation":[77],"termination.":[79],"For":[80],"correspondence":[81],"finding,":[82],"hypotheses":[84],"propagated":[86],"time":[89,96],"points":[90,97],"so":[91],"at":[94],"later":[95],"can":[98],"be":[99],"used":[100],"resolve":[102],"ambiguities.":[103],"A":[104],"handcrafted":[105,109],"similarity":[106],"measure":[107],"motion":[110],"features":[111],"not":[113,119],"necessary.":[114],"Manually":[115],"labeled":[116],"data":[117,133],"required":[120],"training.":[123],"evaluated":[125],"performance":[127],"our":[129],"using":[131],"image":[132,145],"Particle":[136],"Tracking":[137],"Challenge":[138],"as":[139,141],"well":[140],"real":[142],"sequences":[146],"It":[150],"turned":[151],"out":[152],"proposed":[155],"outperforms":[157],"previous":[158],"methods.":[159]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":8},{"year":2023,"cited_by_count":6},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":6}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
