{"id":"https://openalex.org/W2914824058","doi":"https://doi.org/10.1109/tip.2019.2897289","title":"Content-Aware Enhancement of Images With Filamentous Structures","display_name":"Content-Aware Enhancement of Images With Filamentous Structures","publication_year":2019,"publication_date":"2019-02-04","ids":{"openalex":"https://openalex.org/W2914824058","doi":"https://doi.org/10.1109/tip.2019.2897289","mag":"2914824058","pmid":"https://pubmed.ncbi.nlm.nih.gov/30716037"},"language":"en","primary_location":{"id":"doi:10.1109/tip.2019.2897289","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2019.2897289","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6538482","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5089900606","display_name":"Haris Jeelani","orcid":"https://orcid.org/0000-0002-5609-8129"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Haris Jeelani","raw_affiliation_strings":["Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0002-5609-8129","affiliations":[{"raw_affiliation_string":"Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063500144","display_name":"Haoyi Liang","orcid":"https://orcid.org/0000-0003-4870-4149"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haoyi Liang","raw_affiliation_strings":["Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0003-4870-4149","affiliations":[{"raw_affiliation_string":"Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034452294","display_name":"Scott T. Acton","orcid":"https://orcid.org/0000-0003-3288-1255"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott T. Acton","raw_affiliation_strings":["Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0003-3288-1255","affiliations":[{"raw_affiliation_string":"Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006764308","display_name":"Daniel S. Weller","orcid":"https://orcid.org/0000-0001-9818-7325"},"institutions":[{"id":"https://openalex.org/I51556381","display_name":"University of Virginia","ror":"https://ror.org/0153tk833","country_code":"US","type":"education","lineage":["https://openalex.org/I51556381"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel S. Weller","raw_affiliation_strings":["Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA"],"raw_orcid":"https://orcid.org/0000-0001-9818-7325","affiliations":[{"raw_affiliation_string":"Charles L. Brown Department of Electrical and Computer Engineering, University of Virginia, Charlottesville, VA, USA","institution_ids":["https://openalex.org/I51556381"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5089900606"],"corresponding_institution_ids":["https://openalex.org/I51556381"],"apc_list":null,"apc_paid":null,"fwci":1.3294,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.85275915,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"28","issue":"7","first_page":"3451","last_page":"3461"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12015","display_name":"Photoacoustic and Ultrasonic Imaging","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/clutter","display_name":"Clutter","score":0.7740569114685059},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5877261161804199},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5207414627075195},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.5189483165740967},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.5131972432136536},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.490730881690979},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4755396842956543},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.46269282698631287},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.4579755961894989},{"id":"https://openalex.org/keywords/calcium-imaging","display_name":"Calcium imaging","score":0.4514526128768921},{"id":"https://openalex.org/keywords/calcium","display_name":"Calcium","score":0.44789063930511475},{"id":"https://openalex.org/keywords/noise","display_name":"Noise (video)","score":0.4392690360546112},{"id":"https://openalex.org/keywords/neuron","display_name":"Neuron","score":0.42626142501831055},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.42492973804473877},{"id":"https://openalex.org/keywords/confocal-microscopy","display_name":"Confocal microscopy","score":0.41974878311157227},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.36367493867874146},{"id":"https://openalex.org/keywords/optics","display_name":"Optics","score":0.27368849515914917},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22804686427116394},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.20364582538604736},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.12772750854492188},{"id":"https://openalex.org/keywords/radar","display_name":"Radar","score":0.08319553732872009},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.07872062921524048}],"concepts":[{"id":"https://openalex.org/C132094186","wikidata":"https://www.wikidata.org/wiki/Q641585","display_name":"Clutter","level":3,"score":0.7740569114685059},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5877261161804199},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5207414627075195},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.5189483165740967},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.5131972432136536},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.490730881690979},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4755396842956543},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46269282698631287},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.4579755961894989},{"id":"https://openalex.org/C2776032975","wikidata":"https://www.wikidata.org/wiki/Q5018833","display_name":"Calcium imaging","level":3,"score":0.4514526128768921},{"id":"https://openalex.org/C519063684","wikidata":"https://www.wikidata.org/wiki/Q706","display_name":"Calcium","level":2,"score":0.44789063930511475},{"id":"https://openalex.org/C99498987","wikidata":"https://www.wikidata.org/wiki/Q2210247","display_name":"Noise (video)","level":3,"score":0.4392690360546112},{"id":"https://openalex.org/C2778794669","wikidata":"https://www.wikidata.org/wiki/Q43054","display_name":"Neuron","level":2,"score":0.42626142501831055},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.42492973804473877},{"id":"https://openalex.org/C2779178360","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal microscopy","level":2,"score":0.41974878311157227},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.36367493867874146},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.27368849515914917},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22804686427116394},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.20364582538604736},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.12772750854492188},{"id":"https://openalex.org/C554190296","wikidata":"https://www.wikidata.org/wiki/Q47528","display_name":"Radar","level":2,"score":0.08319553732872009},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.07872062921524048},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C191897082","wikidata":"https://www.wikidata.org/wiki/Q11467","display_name":"Metallurgy","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1109/tip.2019.2897289","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2019.2897289","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},{"id":"pmid:30716037","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30716037","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on image processing : a publication of the IEEE Signal Processing Society","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:6538482","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6538482","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Image Process","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:6538482","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6538482","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Trans Image Process","raw_type":"Text"},"sustainable_development_goals":[{"score":0.6399999856948853,"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11"}],"awards":[{"id":"https://openalex.org/G217870416","display_name":null,"funder_award_id":"ABI 1759802","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G5317868706","display_name":null,"funder_award_id":"R21 EB022309","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309424","display_name":"Thomas F. and Kate Miller Jeffress Memorial Trust","ror":"https://ror.org/006tvg625"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W264936753","https://openalex.org/W579109054","https://openalex.org/W1508135620","https://openalex.org/W1686466089","https://openalex.org/W1894928878","https://openalex.org/W1968627050","https://openalex.org/W1973185277","https://openalex.org/W1979088361","https://openalex.org/W1988658915","https://openalex.org/W1997147589","https://openalex.org/W2005476680","https://openalex.org/W2014252132","https://openalex.org/W2018709063","https://openalex.org/W2021411806","https://openalex.org/W2035380851","https://openalex.org/W2042967751","https://openalex.org/W2050023599","https://openalex.org/W2056370875","https://openalex.org/W2061186544","https://openalex.org/W2062619493","https://openalex.org/W2070627872","https://openalex.org/W2073514349","https://openalex.org/W2074925468","https://openalex.org/W2077892070","https://openalex.org/W2084972763","https://openalex.org/W2091066178","https://openalex.org/W2094045132","https://openalex.org/W2097073572","https://openalex.org/W2100705753","https://openalex.org/W2111899019","https://openalex.org/W2113824004","https://openalex.org/W2114240017","https://openalex.org/W2117940227","https://openalex.org/W2124257654","https://openalex.org/W2129534965","https://openalex.org/W2139951616","https://openalex.org/W2142058898","https://openalex.org/W2147298660","https://openalex.org/W2156114286","https://openalex.org/W2157774966","https://openalex.org/W2160547390","https://openalex.org/W2171125155","https://openalex.org/W2211578221","https://openalex.org/W2231009150","https://openalex.org/W2469581795","https://openalex.org/W2511065100","https://openalex.org/W2568393483","https://openalex.org/W2588612844","https://openalex.org/W2598457882","https://openalex.org/W2761953324","https://openalex.org/W2789904724","https://openalex.org/W2996868574","https://openalex.org/W3105014772","https://openalex.org/W3122764147","https://openalex.org/W4251169672","https://openalex.org/W4252890567","https://openalex.org/W6643302270","https://openalex.org/W6655420356","https://openalex.org/W6681807782","https://openalex.org/W6683531280"],"related_works":["https://openalex.org/W1533292911","https://openalex.org/W2030528331","https://openalex.org/W2624205059","https://openalex.org/W2014097959","https://openalex.org/W2005037250","https://openalex.org/W4220713673","https://openalex.org/W3027565891","https://openalex.org/W2098442603","https://openalex.org/W2089782366","https://openalex.org/W2955650869"],"abstract_inverted_index":{"In":[0,85,161],"this":[1],"paper,":[2],"we":[3,91],"describe":[4],"a":[5,17,22],"novel":[6],"enhancement":[7,115,175],"method":[8,15,38,72,99,143],"for":[9,26],"images":[10,51,60,68],"containing":[11],"filamentous":[12,23],"structures.":[13],"Our":[14],"combines":[16],"gradient":[18],"sparsity":[19],"constraint":[20,25],"with":[21,103],"structure":[24,76,106],"the":[27,35,67,75,78,82,86,94,104,109,126,132,135,154],"effective":[28],"removal":[29],"of":[30,46,52,61,81,88,128,134,157],"clutter":[31],"and":[32,41,58,77,131],"noise":[33],"from":[34],"background.":[36],"The":[37],"is":[39],"applied":[40],"evaluated":[42],"on":[43,118],"three":[44],"types":[45],"data:":[47],"1)":[48],"confocal":[49],"microscopy":[50],"neurons;":[53],"2)":[54],"calcium":[55,120,137,146,151],"imaging":[56,121],"data;":[57],"3)":[59],"road":[62,162],"pavement.":[63],"We":[64],"found":[65],"that":[66,93,124],"enhanced":[69,96,111],"by":[70,97,112],"our":[71,98,142,174],"preserve":[73],"both":[74,125],"intensity":[79],"details":[80],"original":[83,105],"object.":[84],"case":[87],"neuron":[89],"microscopy,":[90],"find":[92],"neurons":[95,110,130],"are":[100,139],"better":[101],"correlated":[102],"intensities":[107],"than":[108],"well-known":[113],"vessel":[114],"methods.":[116],"Experiments":[117],"simulated":[119],"data":[122],"indicate":[123],"number":[127],"detected":[129,171],"accuracy":[133],"derived":[136],"activity":[138,152],"improved.":[140],"Applying":[141],"to":[144],"real":[145],"data,":[147],"more":[148],"regions":[149],"exhibiting":[150],"in":[153],"full":[155],"field":[156],"view":[158],"were":[159,170],"found.":[160],"pavement":[163],"crack":[164],"detection,":[165],"smaller":[166],"or":[167],"milder":[168],"cracks":[169],"after":[172],"using":[173],"method.":[176]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}