{"id":"https://openalex.org/W1497305825","doi":"https://doi.org/10.1109/tip.2015.2458174","title":"Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association","display_name":"Tracking Virus Particles in Fluorescence Microscopy Images Using Multi-Scale Detection and Multi-Frame Association","publication_year":2015,"publication_date":"2015-07-17","ids":{"openalex":"https://openalex.org/W1497305825","doi":"https://doi.org/10.1109/tip.2015.2458174","mag":"1497305825","pmid":"https://pubmed.ncbi.nlm.nih.gov/26208342"},"language":"en","primary_location":{"id":"doi:10.1109/tip.2015.2458174","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2015.2458174","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100852214","display_name":"Astha Jaiswal","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Astha Jaiswal","raw_affiliation_strings":["BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","German Cancer Research Center, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017717870","display_name":"William J. Godinez","orcid":"https://orcid.org/0000-0003-4753-4942"},"institutions":[{"id":"https://openalex.org/I1283582996","display_name":"Novartis (Switzerland)","ror":"https://ror.org/02f9zrr09","country_code":"CH","type":"company","lineage":["https://openalex.org/I1283582996"]},{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I4400600974","display_name":"Novartis Institutes for BioMedical Research","ror":"https://ror.org/053gv2m95","country_code":null,"type":"funder","lineage":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]}],"countries":["CH","DE"],"is_corresponding":false,"raw_author_name":"William J. Godinez","raw_affiliation_strings":["BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","German Cancer Research Center, Heidelberg, Germany","Novartis Institutes for Biomedical Research, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]},{"raw_affiliation_string":"Novartis Institutes for Biomedical Research, Basel, Switzerland","institution_ids":["https://openalex.org/I1283582996","https://openalex.org/I4400600974"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044191947","display_name":"Roland Eils","orcid":"https://orcid.org/0000-0002-0034-4036"},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Roland Eils","raw_affiliation_strings":["BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","German Cancer Research Center, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109849203","display_name":"Maik Lehmann","orcid":null},"institutions":[{"id":"https://openalex.org/I143910747","display_name":"TH Bingen University of Applied Sciences","ror":"https://ror.org/01pxkj057","country_code":"DE","type":"education","lineage":["https://openalex.org/I143910747"]},{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Maik Jorg Lehmann","raw_affiliation_strings":["Department of Molecular Parasitology, Humboldt\u2013University Berlin, Berlin, Germany","Faculty of Life Sciences and Engineering, University of Applied Sciences, Bingen, Bingen am Rhein, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Parasitology, Humboldt\u2013University Berlin, Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]},{"raw_affiliation_string":"Faculty of Life Sciences and Engineering, University of Applied Sciences, Bingen, Bingen am Rhein, Germany","institution_ids":["https://openalex.org/I143910747"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105166471","display_name":"Karl Rohr","orcid":null},"institutions":[{"id":"https://openalex.org/I17937529","display_name":"German Cancer Research Center","ror":"https://ror.org/04cdgtt98","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I17937529"]},{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Karl Rohr","raw_affiliation_strings":["BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","German Cancer Research Center, Heidelberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOQUANT Center, Biomedical Computer Vision Group, University of Heidelberg, Heidelberg, Germany","institution_ids":["https://openalex.org/I223822909"]},{"raw_affiliation_string":"German Cancer Research Center, Heidelberg, Germany","institution_ids":["https://openalex.org/I17937529","https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.718,"has_fulltext":false,"cited_by_count":32,"citation_normalized_percentile":{"value":0.93690228,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"24","issue":"11","first_page":"4122","last_page":"4136"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13114","display_name":"Image Processing Techniques and Applications","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2214","display_name":"Media Technology"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.7035599946975708},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6221118569374084},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.6055498719215393},{"id":"https://openalex.org/keywords/particle-filter","display_name":"Particle filter","score":0.5528749823570251},{"id":"https://openalex.org/keywords/frame","display_name":"Frame (networking)","score":0.5447836518287659},{"id":"https://openalex.org/keywords/kalman-filter","display_name":"Kalman filter","score":0.5292690992355347},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5232440829277039},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5008988380432129},{"id":"https://openalex.org/keywords/statistical-model","display_name":"Statistical model","score":0.42834293842315674},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3923181891441345}],"concepts":[{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.7035599946975708},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6221118569374084},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.6055498719215393},{"id":"https://openalex.org/C52421305","wikidata":"https://www.wikidata.org/wiki/Q1151499","display_name":"Particle filter","level":3,"score":0.5528749823570251},{"id":"https://openalex.org/C126042441","wikidata":"https://www.wikidata.org/wiki/Q1324888","display_name":"Frame (networking)","level":2,"score":0.5447836518287659},{"id":"https://openalex.org/C157286648","wikidata":"https://www.wikidata.org/wiki/Q846780","display_name":"Kalman filter","level":2,"score":0.5292690992355347},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5232440829277039},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5008988380432129},{"id":"https://openalex.org/C114289077","wikidata":"https://www.wikidata.org/wiki/Q3284399","display_name":"Statistical model","level":2,"score":0.42834293842315674},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3923181891441345},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C19417346","wikidata":"https://www.wikidata.org/wiki/Q7922","display_name":"Pedagogy","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007091","descriptor_name":"Image Processing, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D008856","descriptor_name":"Microscopy, Fluorescence","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D014771","descriptor_name":"Virion","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":false},{"descriptor_ui":"D014773","descriptor_name":"Virology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014773","descriptor_name":"Virology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014773","descriptor_name":"Virology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059629","descriptor_name":"Signal-To-Noise Ratio","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059629","descriptor_name":"Signal-To-Noise Ratio","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059629","descriptor_name":"Signal-To-Noise Ratio","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tip.2015.2458174","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2015.2458174","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},{"id":"pmid:26208342","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26208342","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on image processing : a publication of the IEEE Signal Processing Society","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Sustainable cities and communities","id":"https://metadata.un.org/sdg/11","score":0.4000000059604645}],"awards":[],"funders":[{"id":"https://openalex.org/F4320334889","display_name":"Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, University of Heidelberg","ror":"https://ror.org/038t36y30"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":49,"referenced_works":["https://openalex.org/W81229128","https://openalex.org/W149540474","https://openalex.org/W1564419782","https://openalex.org/W1596096567","https://openalex.org/W1794288718","https://openalex.org/W1965510849","https://openalex.org/W1973421894","https://openalex.org/W1979348982","https://openalex.org/W1980219685","https://openalex.org/W1982221523","https://openalex.org/W1985928875","https://openalex.org/W1986534138","https://openalex.org/W1995583822","https://openalex.org/W2001572027","https://openalex.org/W2008402229","https://openalex.org/W2012231760","https://openalex.org/W2015948161","https://openalex.org/W2023171365","https://openalex.org/W2029137841","https://openalex.org/W2032654570","https://openalex.org/W2037947871","https://openalex.org/W2040275793","https://openalex.org/W2046385387","https://openalex.org/W2052258172","https://openalex.org/W2057296715","https://openalex.org/W2069782179","https://openalex.org/W2073048215","https://openalex.org/W2077251032","https://openalex.org/W2095485540","https://openalex.org/W2101916976","https://openalex.org/W2103706175","https://openalex.org/W2105916176","https://openalex.org/W2105934661","https://openalex.org/W2108178277","https://openalex.org/W2109200236","https://openalex.org/W2113127660","https://openalex.org/W2126371427","https://openalex.org/W2129140439","https://openalex.org/W2143623375","https://openalex.org/W2146688665","https://openalex.org/W2152969835","https://openalex.org/W2157807469","https://openalex.org/W2168237413","https://openalex.org/W2222512263","https://openalex.org/W2397134616","https://openalex.org/W6603243847","https://openalex.org/W6660342813","https://openalex.org/W6668889849","https://openalex.org/W6712447211"],"related_works":["https://openalex.org/W2015530857","https://openalex.org/W2556064263","https://openalex.org/W4252024964","https://openalex.org/W4253883008","https://openalex.org/W2002739602","https://openalex.org/W2345647014","https://openalex.org/W2201192772","https://openalex.org/W3136891595","https://openalex.org/W2535030201","https://openalex.org/W1964819397"],"abstract_inverted_index":{"Automatic":[0],"fluorescent":[1],"particle":[2,28,86],"tracking":[3,29,125,138],"is":[4,61,102],"an":[5],"essential":[6],"task":[7],"to":[8,105,140],"study":[9],"the":[10,77,92,95,114,129,154,159],"dynamics":[11],"of":[12,16,149],"a":[13,20,26,56,64,123],"large":[14],"number":[15],"biological":[17],"structures":[18],"at":[19],"sub-cellular":[21],"level.":[22],"We":[23,132,156],"have":[24,54,119,133],"developed":[25,55],"probabilistic":[27,124,137],"approach":[30,126,139,161],"based":[31,62,127],"on":[32,63,128],"multi-scale":[33,40,110],"detection":[34,41,111],"and":[35,73,113,152],"two-step":[36,57],"multi-frame":[37,58,115],"association.":[38],"The":[39,109],"scheme":[42,112],"allows":[43],"coping":[44],"with":[45,122],"particles":[46,151],"in":[47,88],"close":[48],"proximity.":[49],"For":[50],"finding":[51,117],"associations,":[52],"we":[53],"algorithm,":[59],"which":[60],"temporally":[65],"semiglobal":[66],"formulation":[67],"as":[68,70,142,144],"well":[69,143],"spatially":[71],"local":[72,89],"global":[74,96],"optimization.":[75],"In":[76,91],"first":[78],"step,":[79,94],"reliable":[80],"associations":[81],"are":[82],"determined":[83],"for":[84],"each":[85],"individually":[87],"neighborhoods.":[90],"second":[93],"spatial":[97],"information":[98],"over":[99],"multiple":[100],"frames":[101],"exploited":[103],"jointly":[104],"determine":[106],"optimal":[107],"associations.":[108],"association":[116],"algorithm":[118],"been":[120],"combined":[121],"Kalman":[130],"filter.":[131],"successfully":[134],"applied":[135],"our":[136],"synthetic":[141],"real":[145],"microscopy":[146],"image":[147],"sequences":[148],"virus":[150],"quantified":[153],"performance.":[155],"found":[157],"that":[158],"proposed":[160],"outperforms":[162],"previous":[163],"approaches.":[164]},"counts_by_year":[{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":6},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
