{"id":"https://openalex.org/W1996051014","doi":"https://doi.org/10.1109/tip.2011.2177911","title":"Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy","display_name":"Methodology for Reconstructing Early Zebrafish Development From In Vivo Multiphoton Microscopy","publication_year":2011,"publication_date":"2011-12-03","ids":{"openalex":"https://openalex.org/W1996051014","doi":"https://doi.org/10.1109/tip.2011.2177911","mag":"1996051014","pmid":"https://pubmed.ncbi.nlm.nih.gov/22155959"},"language":"en","primary_location":{"id":"doi:10.1109/tip.2011.2177911","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2011.2177911","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://oa.upm.es/15972/","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5032302239","display_name":"Miguel Luengo-Oroz","orcid":"https://orcid.org/0000-0002-8694-2001"},"institutions":[{"id":"https://openalex.org/I4210105141","display_name":"Biomedical Research Networking Center in Bioengineering, Biomaterials and Nanomedicine","ror":"https://ror.org/01gm5f004","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210105141"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. A. Luengo-Oroz","raw_affiliation_strings":["Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","CIBER-BBN - Biomedical Image Technologies, Biomedical Research Center (Biomedical Research Center in Bioengineering, Biomaterials, and Nanomedicine Madrid - Spain)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"CIBER-BBN - Biomedical Image Technologies, Biomedical Research Center (Biomedical Research Center in Bioengineering, Biomaterials, and Nanomedicine Madrid - Spain)","institution_ids":["https://openalex.org/I4210105141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072388237","display_name":"Jos\u00e9 L. Rubio-Guivernau","orcid":null},"institutions":[{"id":"https://openalex.org/I6585545","display_name":"European Telecommunications Standards Institute","ror":"https://ror.org/00pwny267","country_code":"FR","type":"nonprofit","lineage":["https://openalex.org/I6585545"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES","FR"],"is_corresponding":false,"raw_author_name":"J. L. Rubio-Guivernau","raw_affiliation_strings":["Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","Biomedical Image Technologies Lab, ETSI Telecomunicaci\u00f3n (Madrid - Spain)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Biomedical Image Technologies Lab, ETSI Telecomunicaci\u00f3n (Madrid - Spain)","institution_ids":["https://openalex.org/I6585545"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101443131","display_name":"Emmanuel Faure","orcid":"https://orcid.org/0000-0003-2787-0885"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210107641","display_name":"Centre de Math\u00e9matiques Appliqu\u00e9es de l'\u00c9cole polytechnique","ror":"https://ror.org/012e1xn46","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210107641","https://openalex.org/I4210141950","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4405260911","display_name":"Centre de Recherche en \u00c9pist\u00e9mologie Appliqu\u00e9e","ror":"https://ror.org/04fhvf194","country_code":"FR","type":"facility","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102","https://openalex.org/I4405260911"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"E. Faure","raw_affiliation_strings":["Ecole Polytechnique, Centre National de la Recherche Scientifique, Paris, France","CREA - Centre de recherche en \u00e9pist\u00e9mologie appliqu\u00e9e (ROUTE DE SACLAY 91128 PALAISEAU CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique, Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"CREA - Centre de recherche en \u00e9pist\u00e9mologie appliqu\u00e9e (ROUTE DE SACLAY 91128 PALAISEAU CEDEX - France)","institution_ids":["https://openalex.org/I4210107641","https://openalex.org/I4405260911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033642367","display_name":"Thierry Savy","orcid":"https://orcid.org/0000-0001-5970-3817"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210107641","display_name":"Centre de Math\u00e9matiques Appliqu\u00e9es de l'\u00c9cole polytechnique","ror":"https://ror.org/012e1xn46","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210107641","https://openalex.org/I4210141950","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4405260911","display_name":"Centre de Recherche en \u00c9pist\u00e9mologie Appliqu\u00e9e","ror":"https://ror.org/04fhvf194","country_code":"FR","type":"facility","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102","https://openalex.org/I4405260911"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"T. Savy","raw_affiliation_strings":["Ecole Polytechnique, Centre National de la Recherche Scientifique, Paris, France","CREA - Centre de recherche en \u00e9pist\u00e9mologie appliqu\u00e9e (ROUTE DE SACLAY 91128 PALAISEAU CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique, Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"CREA - Centre de recherche en \u00e9pist\u00e9mologie appliqu\u00e9e (ROUTE DE SACLAY 91128 PALAISEAU CEDEX - France)","institution_ids":["https://openalex.org/I4210107641","https://openalex.org/I4405260911"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028183933","display_name":"Louise Duloquin","orcid":null},"institutions":[{"id":"https://openalex.org/I4210153407","display_name":"Laboratoire de Neurobiologie Cellulaire et Mol\u00e9culaire","ror":"https://ror.org/0452rtt80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210114748","https://openalex.org/I4210139971","https://openalex.org/I4210153407"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"L. Duloquin","raw_affiliation_strings":["Neurobiologie et Developpement, Centre National de la Recherche Scientifique, Gif/Yvette, France","INAF - Institut de Neurobiologie Alfred Fessard (B\u00e2t. 32/33 1 Avenue de la terrasse 91198 GIF SUR YVETTE CEDEX - France)","N&eD - Neurobiologie et D\u00e9veloppement (Institut de Neurobiologie Alfred Fessard, B\u00e2t 33, 1 avenue de la Terrasse 91198 Gif-sur-Yvette Cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurobiologie et Developpement, Centre National de la Recherche Scientifique, Gif/Yvette, France","institution_ids":["https://openalex.org/I4210153407"]},{"raw_affiliation_string":"INAF - Institut de Neurobiologie Alfred Fessard (B\u00e2t. 32/33 1 Avenue de la terrasse 91198 GIF SUR YVETTE CEDEX - France)","institution_ids":["https://openalex.org/I4210153407"]},{"raw_affiliation_string":"N&eD - Neurobiologie et D\u00e9veloppement (Institut de Neurobiologie Alfred Fessard, B\u00e2t 33, 1 avenue de la Terrasse 91198 Gif-sur-Yvette Cedex - France)","institution_ids":["https://openalex.org/I4210153407"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009701365","display_name":"Nicolas Olivier","orcid":"https://orcid.org/0000-0001-9042-5456"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210132720","display_name":"Laboratoire d'Optique Appliqu\u00e9e","ror":"https://ror.org/03czns913","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I201181511","https://openalex.org/I4210098836","https://openalex.org/I4210132720","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"N. Olivier","raw_affiliation_strings":["Ecole Polytechnique, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Palaiseau, France","LOB - Laboratoire d'optique et biosciences (Route de Saclay 91128 PALAISEAU CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Palaiseau, France","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"LOB - Laboratoire d'optique et biosciences (Route de Saclay 91128 PALAISEAU CEDEX - France)","institution_ids":["https://openalex.org/I4210132720"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109983691","display_name":"D. Pastor","orcid":null},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"D. Pastor","raw_affiliation_strings":["Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","Biomedical Image Technologies, ETSITelecomunicaci\u00f3n (Universidad Polit\u00e9cnica de Madrid - Spain)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Biomedical Image Technologies, ETSITelecomunicaci\u00f3n (Universidad Polit\u00e9cnica de Madrid - Spain)","institution_ids":["https://openalex.org/I88060688"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012910949","display_name":"Mar\u00eda J. Ledesma\u2010Carbayo","orcid":"https://orcid.org/0000-0001-6846-3923"},"institutions":[{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"M. Ledesma-Carbayo","raw_affiliation_strings":["Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","Biomed. Image Technol. Lab., Univ. Politec. de Madrid, Madrid, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"Biomed. Image Technol. Lab., Univ. Politec. de Madrid, Madrid, Spain","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091695650","display_name":"Delphine D\u00e9barre","orcid":"https://orcid.org/0000-0002-0513-6172"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210113150","display_name":"Laboratoire Interdisciplinaire de Physique","ror":"https://ror.org/023n9q531","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210113150","https://openalex.org/I899635006"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"D. Debarre","raw_affiliation_strings":["Ecole Polytechnique, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Palaiseau, France","LIPhy - Laboratoire Interdisciplinaire de Physique [Saint Martin d\u2019H\u00e8res] (140 rue de la Physique\r\n38058 Grenoble cedex 9 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Palaiseau, France","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"LIPhy - Laboratoire Interdisciplinaire de Physique [Saint Martin d\u2019H\u00e8res] (140 rue de la Physique\r\n38058 Grenoble cedex 9 - France)","institution_ids":["https://openalex.org/I4210113150"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105520893","display_name":"Paul Bourgine","orcid":null},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210107641","display_name":"Centre de Math\u00e9matiques Appliqu\u00e9es de l'\u00c9cole polytechnique","ror":"https://ror.org/012e1xn46","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I142476485","https://openalex.org/I4210107641","https://openalex.org/I4210141950","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210127056","display_name":"Laboratoire Mati\u00e8re et Syst\u00e8mes Complexes","ror":"https://ror.org/032w6q449","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210095849","https://openalex.org/I4210127056"]},{"id":"https://openalex.org/I4405260911","display_name":"Centre de Recherche en \u00c9pist\u00e9mologie Appliqu\u00e9e","ror":"https://ror.org/04fhvf194","country_code":"FR","type":"facility","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102","https://openalex.org/I4405260911"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"P. Bourgine","raw_affiliation_strings":["Ecole Polytechnique, Centre National de la Recherche Scientifique, Paris, France","CREA - Centre de recherche en \u00e9pist\u00e9mologie appliqu\u00e9e (ROUTE DE SACLAY 91128 PALAISEAU CEDEX - France)","RNSC - R\u00e9seau National des Syst\u00e8mes Complexes (57-59 rue Lhomond, Paris 75005 - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique, Centre National de la Recherche Scientifique, Paris, France","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"CREA - Centre de recherche en \u00e9pist\u00e9mologie appliqu\u00e9e (ROUTE DE SACLAY 91128 PALAISEAU CEDEX - France)","institution_ids":["https://openalex.org/I4210107641","https://openalex.org/I4405260911"]},{"raw_affiliation_string":"RNSC - R\u00e9seau National des Syst\u00e8mes Complexes (57-59 rue Lhomond, Paris 75005 - France)","institution_ids":["https://openalex.org/I4210127056"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029886936","display_name":"Emmanuel Beaurepaire","orcid":"https://orcid.org/0000-0002-2082-8214"},"institutions":[{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]},{"id":"https://openalex.org/I4210132720","display_name":"Laboratoire d'Optique Appliqu\u00e9e","ror":"https://ror.org/03czns913","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I142476485","https://openalex.org/I201181511","https://openalex.org/I4210098836","https://openalex.org/I4210132720","https://openalex.org/I4210145102","https://openalex.org/I4210145102","https://openalex.org/I4405258625"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"E. Beaurepaire","raw_affiliation_strings":["Ecole Polytechnique, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Palaiseau, France","LOB - Laboratoire d'optique et biosciences (Route de Saclay 91128 PALAISEAU CEDEX - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ecole Polytechnique, Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale, Palaiseau, France","institution_ids":["https://openalex.org/I142476485"]},{"raw_affiliation_string":"LOB - Laboratoire d'optique et biosciences (Route de Saclay 91128 PALAISEAU CEDEX - France)","institution_ids":["https://openalex.org/I4210132720"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036028681","display_name":"Nadine Peyri\u00e9ras","orcid":"https://orcid.org/0000-0002-4905-6414"},"institutions":[{"id":"https://openalex.org/I4210127056","display_name":"Laboratoire Mati\u00e8re et Syst\u00e8mes Complexes","ror":"https://ror.org/032w6q449","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4210095849","https://openalex.org/I4210127056"]},{"id":"https://openalex.org/I4210153407","display_name":"Laboratoire de Neurobiologie Cellulaire et Mol\u00e9culaire","ror":"https://ror.org/0452rtt80","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210114748","https://openalex.org/I4210139971","https://openalex.org/I4210153407"]},{"id":"https://openalex.org/I4403386758","display_name":"Institut des Syst\u00e8mes Complexes Paris \u00cele-de-France","ror":"https://ror.org/04k1akk19","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I204730241","https://openalex.org/I4403386758"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"N. Peyrieras","raw_affiliation_strings":["Neurobiologie et Developpement, Centre National de la Recherche Scientifique, Gif/Yvette, France","INAF - Institut de Neurobiologie Alfred Fessard (B\u00e2t. 32/33 1 Avenue de la terrasse 91198 GIF SUR YVETTE CEDEX - France)","ISC-PIF - Institut des Syst\u00e8mes Complexes - Paris Ile-de-France (57-59 rue Lhomond 75005 Paris - France)","N&eD - Neurobiologie et D\u00e9veloppement (Institut de Neurobiologie Alfred Fessard, B\u00e2t 33, 1 avenue de la Terrasse 91198 Gif-sur-Yvette Cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurobiologie et Developpement, Centre National de la Recherche Scientifique, Gif/Yvette, France","institution_ids":["https://openalex.org/I4210153407"]},{"raw_affiliation_string":"INAF - Institut de Neurobiologie Alfred Fessard (B\u00e2t. 32/33 1 Avenue de la terrasse 91198 GIF SUR YVETTE CEDEX - France)","institution_ids":["https://openalex.org/I4210153407"]},{"raw_affiliation_string":"ISC-PIF - Institut des Syst\u00e8mes Complexes - Paris Ile-de-France (57-59 rue Lhomond 75005 Paris - France)","institution_ids":["https://openalex.org/I4210127056","https://openalex.org/I4403386758"]},{"raw_affiliation_string":"N&eD - Neurobiologie et D\u00e9veloppement (Institut de Neurobiologie Alfred Fessard, B\u00e2t 33, 1 avenue de la Terrasse 91198 Gif-sur-Yvette Cedex - France)","institution_ids":["https://openalex.org/I4210153407"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016180116","display_name":"A. Santos","orcid":"https://orcid.org/0000-0001-7423-9135"},"institutions":[{"id":"https://openalex.org/I4210105141","display_name":"Biomedical Research Networking Center in Bioengineering, Biomaterials and Nanomedicine","ror":"https://ror.org/01gm5f004","country_code":"ES","type":"other","lineage":["https://openalex.org/I4210105141"]},{"id":"https://openalex.org/I88060688","display_name":"Universidad Polit\u00e9cnica de Madrid","ror":"https://ror.org/03n6nwv02","country_code":"ES","type":"education","lineage":["https://openalex.org/I88060688"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"A. Santos","raw_affiliation_strings":["Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","CIBER-BBN - Biomedical Image Technologies, Biomedical Research Center (Biomedical Research Center in Bioengineering, Biomaterials, and Nanomedicine Madrid - Spain)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biomedical Image Technologies Laboratory of ETSI Telecomunicaci\u00f3n, Universidad Polit\u00e9cnica de Madrid, Madrid, Spain","institution_ids":["https://openalex.org/I88060688"]},{"raw_affiliation_string":"CIBER-BBN - Biomedical Image Technologies, Biomedical Research Center (Biomedical Research Center in Bioengineering, Biomaterials, and Nanomedicine Madrid - Spain)","institution_ids":["https://openalex.org/I4210105141"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":11,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.8781,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.86409776,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"21","issue":"4","first_page":"2335","last_page":"2340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9930999875068665,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/zebrafish","display_name":"Zebrafish","score":0.7462231516838074},{"id":"https://openalex.org/keywords/computer-vision","display_name":"Computer vision","score":0.5078168511390686},{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.49724438786506653},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.49222293496131897},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.47069525718688965},{"id":"https://openalex.org/keywords/developmental-biology","display_name":"Developmental biology","score":0.45270204544067383},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.4490250051021576},{"id":"https://openalex.org/keywords/multicellular-organism","display_name":"Multicellular organism","score":0.4481309652328491},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4463137090206146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37224888801574707},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.2901102304458618},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.2846892178058624},{"id":"https://openalex.org/keywords/image","display_name":"Image (mathematics)","score":0.1668611764907837}],"concepts":[{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.7462231516838074},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5078168511390686},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.49724438786506653},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.49222293496131897},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.47069525718688965},{"id":"https://openalex.org/C183074962","wikidata":"https://www.wikidata.org/wiki/Q213713","display_name":"Developmental biology","level":2,"score":0.45270204544067383},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.4490250051021576},{"id":"https://openalex.org/C74318829","wikidata":"https://www.wikidata.org/wiki/Q36458","display_name":"Multicellular organism","level":3,"score":0.4481309652328491},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4463137090206146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37224888801574707},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.2901102304458618},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.2846892178058624},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.1668611764907837},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007089","descriptor_name":"Image Enhancement","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D007090","descriptor_name":"Image Interpretation, Computer-Assisted","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012680","descriptor_name":"Sensitivity and Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000033","qualifier_name":"anatomy & histology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D015027","descriptor_name":"Zebrafish","qualifier_ui":"Q000196","qualifier_name":"embryology","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D036641","descriptor_name":"Microscopy, Fluorescence, Multiphoton","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058948","descriptor_name":"Cell Tracking","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1109/tip.2011.2177911","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tip.2011.2177911","pdf_url":null,"source":{"id":"https://openalex.org/S4210173141","display_name":"IEEE Transactions on Image Processing","issn_l":"1057-7149","issn":["1057-7149","1941-0042"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Image Processing","raw_type":"journal-article"},{"id":"pmid:22155959","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22155959","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on image processing : a publication of the IEEE Signal Processing Society","raw_type":null},{"id":"pmh:oai:oa.upm.es:15972","is_oa":false,"landing_page_url":"https://oa.upm.es/15972/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196323","display_name":"UPM Digital Archive (Technical University of Madrid)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I88060688","host_organization_name":"Universidad Polit\u00e9cnica de Madrid","host_organization_lineage":["https://openalex.org/I88060688"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"IEEE Transactions on Image Processing, ISSN 1057-7149, 2012-04, Vol. 21, No. 4","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-00683640v1","is_oa":false,"landing_page_url":"https://hal.science/hal-00683640","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Image Processing, 2012, 21 (4), pp.2335-40. &#x27E8;10.1109/TIP.2011.2177911&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:dnet:archivodigit::4ed619e796a99bc13760510acf5068f0","is_oa":true,"landing_page_url":"http://oa.upm.es/15972/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Image Processing, ISSN 1057-7149, 2012-04, Vol. 21, No. 4","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:dnet:archivodigit::4ed619e796a99bc13760510acf5068f0","is_oa":true,"landing_page_url":"http://oa.upm.es/15972/","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"IEEE Transactions on Image Processing, ISSN 1057-7149, 2012-04, Vol. 21, No. 4","raw_type":"info:eu-repo/semantics/article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1961074127","https://openalex.org/W1970531686","https://openalex.org/W1977786555","https://openalex.org/W1979968811","https://openalex.org/W1990389783","https://openalex.org/W2004114662","https://openalex.org/W2004436340","https://openalex.org/W2031312855","https://openalex.org/W2039657602","https://openalex.org/W2056506778","https://openalex.org/W2092007754","https://openalex.org/W2127890285","https://openalex.org/W2143146918","https://openalex.org/W2156257772","https://openalex.org/W2160754664","https://openalex.org/W2163731062","https://openalex.org/W2168237413","https://openalex.org/W4231995729"],"related_works":["https://openalex.org/W4256528904","https://openalex.org/W1597543017","https://openalex.org/W4245153001","https://openalex.org/W4243165149","https://openalex.org/W3147492987","https://openalex.org/W2938575486","https://openalex.org/W4237600267","https://openalex.org/W4283069614","https://openalex.org/W2007294720","https://openalex.org/W199292195"],"abstract_inverted_index":{"Investigating":[0],"cell":[1,23,26,57,70,79],"dynamics":[2,58],"during":[3,59],"early":[4,105],"zebrafish":[5,30,106],"embryogenesis":[6],"requires":[7],"specific":[8],"image":[9,47],"acquisition":[10],"and":[11,18,25,42,51,78,89],"analysis":[12,94],"strategies.":[13],"Multiharmonic":[14],"microscopy,":[15],"i.e.,":[16],"second-":[17],"third-harmonic":[19],"generations,":[20],"allows":[21,65],"imaging":[22],"divisions":[24],"membranes":[27],"in":[28],"unstained":[29],"embryos":[31,98],"from":[32],"1-":[33],"to":[34],"1000-cell":[35,83],"stage.":[36],"This":[37,63],"paper":[38],"presents":[39],"the":[40,54,66,69,82,96],"design":[41],"implementation":[43],"of":[44,56,68,95,104],"a":[45],"dedicated":[46],"processing":[48],"pipeline":[49],"(tracking":[50],"segmentation)":[52],"for":[53],"reconstruction":[55,67],"these":[60],"developmental":[61],"stages.":[62],"methodology":[64],"lineage":[71],"tree":[72],"including":[73],"division":[74],"timings,":[75],"spatial":[76,91],"coordinates,":[77],"shape":[80],"until":[81],"stage":[84],"with":[85],"minute":[86],"temporal":[87],"accuracy":[88],"micrometer":[90],"resolution.":[92],"Data":[93],"digital":[97],"provides":[99],"an":[100],"extensive":[101],"quantitative":[102],"description":[103],"embryogenesis.":[107]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":3}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
