{"id":"https://openalex.org/W4400678951","doi":"https://doi.org/10.1109/tfuzz.2024.3428402","title":"Structured Sparse Regularization-Based Deep Fuzzy Networks for RNA N6-Methyladenosine Sites Prediction","display_name":"Structured Sparse Regularization-Based Deep Fuzzy Networks for RNA N6-Methyladenosine Sites Prediction","publication_year":2024,"publication_date":"2024-07-16","ids":{"openalex":"https://openalex.org/W4400678951","doi":"https://doi.org/10.1109/tfuzz.2024.3428402"},"language":"en","primary_location":{"id":"doi:10.1109/tfuzz.2024.3428402","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tfuzz.2024.3428402","pdf_url":null,"source":{"id":"https://openalex.org/S134177497","display_name":"IEEE Transactions on Fuzzy Systems","issn_l":"1063-6706","issn":["1063-6706","1941-0034"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Fuzzy Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008569384","display_name":"Leyao Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I162868743","display_name":"Tianjin University","ror":"https://ror.org/012tb2g32","country_code":"CN","type":"education","lineage":["https://openalex.org/I162868743"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Leyao Wang","raw_affiliation_strings":["College of Intelligence and Computing, Tianjin University, Tianjin, China"],"affiliations":[{"raw_affiliation_string":"College of Intelligence and Computing, Tianjin University, Tianjin, China","institution_ids":["https://openalex.org/I162868743"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110926760","display_name":"Yuqing Qian","orcid":"https://orcid.org/0009-0004-7460-4947"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuqing Qian","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China"],"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102026202","display_name":"Hao Xie","orcid":"https://orcid.org/0009-0000-3374-9980"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hao Xie","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100688233","display_name":"Yijie Ding","orcid":"https://orcid.org/0000-0003-2911-7643"},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]},{"id":"https://openalex.org/I4210123686","display_name":"Quzhou University","ror":"https://ror.org/024nfx323","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210123686"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yijie Ding","raw_affiliation_strings":["Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, China"],"affiliations":[{"raw_affiliation_string":"Yangtze Delta Region Institute (Quzhou), University of Electronic Science and Technology of China, Quzhou, China","institution_ids":["https://openalex.org/I4210123686","https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100702161","display_name":"Fei Guo","orcid":"https://orcid.org/0000-0001-8346-0798"},"institutions":[{"id":"https://openalex.org/I139660479","display_name":"Central South University","ror":"https://ror.org/00f1zfq44","country_code":"CN","type":"education","lineage":["https://openalex.org/I139660479"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fei Guo","raw_affiliation_strings":["School of Computer Science and Engineering, Central South University, Changsha, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Central South University, Changsha, China","institution_ids":["https://openalex.org/I139660479"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5008569384"],"corresponding_institution_ids":["https://openalex.org/I162868743"],"apc_list":null,"apc_paid":null,"fwci":1.4966,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.81919174,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"33","issue":"1","first_page":"131","last_page":"144"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9693999886512756,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5832731127738953},{"id":"https://openalex.org/keywords/fuzzy-logic","display_name":"Fuzzy logic","score":0.579587459564209},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5635571479797363},{"id":"https://openalex.org/keywords/regularization","display_name":"Regularization (linguistics)","score":0.5634262561798096},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4325740933418274},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32652539014816284}],"concepts":[{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5832731127738953},{"id":"https://openalex.org/C58166","wikidata":"https://www.wikidata.org/wiki/Q224821","display_name":"Fuzzy logic","level":2,"score":0.579587459564209},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5635571479797363},{"id":"https://openalex.org/C2776135515","wikidata":"https://www.wikidata.org/wiki/Q17143721","display_name":"Regularization (linguistics)","level":2,"score":0.5634262561798096},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4325740933418274},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32652539014816284}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tfuzz.2024.3428402","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tfuzz.2024.3428402","pdf_url":null,"source":{"id":"https://openalex.org/S134177497","display_name":"IEEE Transactions on Fuzzy Systems","issn_l":"1063-6706","issn":["1063-6706","1941-0034"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Fuzzy Systems","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2245046682","display_name":null,"funder_award_id":"U22A2038","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3758836111","display_name":null,"funder_award_id":"62322215","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6446245973","display_name":null,"funder_award_id":"62250028","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7037578608","display_name":null,"funder_award_id":"62172076","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":47,"referenced_works":["https://openalex.org/W776567260","https://openalex.org/W1941339056","https://openalex.org/W1968464152","https://openalex.org/W1987243580","https://openalex.org/W1995450389","https://openalex.org/W2007429249","https://openalex.org/W2022770379","https://openalex.org/W2065847836","https://openalex.org/W2071930821","https://openalex.org/W2078964320","https://openalex.org/W2079325629","https://openalex.org/W2080404350","https://openalex.org/W2124266758","https://openalex.org/W2136838997","https://openalex.org/W2141818629","https://openalex.org/W2157825442","https://openalex.org/W2165260680","https://openalex.org/W2287984595","https://openalex.org/W2464909783","https://openalex.org/W2559588458","https://openalex.org/W2618512726","https://openalex.org/W2738051834","https://openalex.org/W2883534252","https://openalex.org/W2885420314","https://openalex.org/W2937997287","https://openalex.org/W2946217053","https://openalex.org/W2955930197","https://openalex.org/W2981889159","https://openalex.org/W3022821485","https://openalex.org/W3046351677","https://openalex.org/W3047705148","https://openalex.org/W3133117790","https://openalex.org/W3133591621","https://openalex.org/W3133771674","https://openalex.org/W3194387680","https://openalex.org/W3197003753","https://openalex.org/W4221004295","https://openalex.org/W4226149298","https://openalex.org/W4280521129","https://openalex.org/W4286210822","https://openalex.org/W4308772822","https://openalex.org/W4311849731","https://openalex.org/W4316171067","https://openalex.org/W4364322558","https://openalex.org/W4385859244","https://openalex.org/W4387096312","https://openalex.org/W4403782367"],"related_works":["https://openalex.org/W4254199101","https://openalex.org/W4300427796","https://openalex.org/W1670153145","https://openalex.org/W2051864124","https://openalex.org/W3188962172","https://openalex.org/W3023929447","https://openalex.org/W2021131614","https://openalex.org/W2364847665","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"In":[0,136],"many":[1],"biological":[2],"processes,":[3],"N6-methyladenosine":[4],"(m6A)":[5],"plays":[6],"a":[7,34,82,95,103],"critical":[8],"role.":[9],"Experimental":[10],"methods":[11,24],"for":[12],"identifying":[13],"m6A":[14,49],"sites":[15,50],"have":[16],"proven":[17],"to":[18,47,57,73,138],"be":[19],"costly,":[20],"and":[21,105,124,131,155],"existing":[22,174],"computational":[23,36],"still":[25],"require":[26],"improvement.":[27],"To":[28],"address":[29],"these":[30],"challenges,":[31],"we":[32],"develop":[33],"novel":[35],"method":[37,114,163],"called":[38],"structured":[39,148],"sparse":[40,149],"regularization-based":[41],"fuzzy":[42,55,63,68],"hierarchical":[43],"echo":[44],"state":[45,78],"network":[46,69,79],"identify":[48],"in":[51],"mammals.":[52],"We":[53],"apply":[54],"systems":[56],"deep":[58,67],"learning.":[59],"Compared":[60],"with":[61],"traditional":[62],"inference":[64],"systems,":[65],"this":[66],"has":[70,132],"the":[71,141,153,158],"ability":[72],"generate":[74],"feature":[75],"representations.":[76],"Echo":[77],"(ESN)":[80],"is":[81,120],"special":[83],"type":[84],"of":[85,91,112,122,157,161],"recurrent":[86],"neural":[87],"network,":[88],"which":[89,151],"consists":[90],"an":[92,106],"input":[93],"layer,":[94],"randomly":[96],"generated":[97],"large":[98],"fixed":[99],"hidden":[100,126],"layer":[101,143],"(called":[102],"reservoir),":[104],"adaptive":[107],"output":[108,142],"layer.":[109],"The":[110],"advantages":[111],"our":[113,162],"over":[115],"ESNs":[116],"are":[117,145],"that":[118,171],"it":[119,166,172],"capable":[121],"mining":[123],"capturing":[125],"features":[127],"layer-by-layer":[128],"within":[129],"reservoirs":[130],"better":[133],"approximation":[134],"performance.":[135],"order":[137],"remove":[139],"redundancy,":[140],"weights":[144],"trained":[146],"by":[147,164],"learning,":[150],"enhances":[152],"generalizability":[154],"robustness":[156],"method.":[159],"Evaluation":[160],"testing":[165],"on":[167],"tissue-specific":[168],"datasets":[169],"shows":[170],"outperforms":[173],"tools.":[175]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2}],"updated_date":"2025-12-22T23:10:17.713674","created_date":"2025-10-10T00:00:00"}
