{"id":"https://openalex.org/W4213434374","doi":"https://doi.org/10.1109/tevc.2022.3153286","title":"Multi-SANA: Comparing Measures of Topological Similarity for Multiple Network Alignment","display_name":"Multi-SANA: Comparing Measures of Topological Similarity for Multiple Network Alignment","publication_year":2022,"publication_date":"2022-02-23","ids":{"openalex":"https://openalex.org/W4213434374","doi":"https://doi.org/10.1109/tevc.2022.3153286"},"language":"en","primary_location":{"id":"doi:10.1109/tevc.2022.3153286","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tevc.2022.3153286","pdf_url":null,"source":{"id":"https://openalex.org/S93787993","display_name":"IEEE Transactions on Evolutionary Computation","issn_l":"1089-778X","issn":["1089-778X","1941-0026"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Evolutionary Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065246040","display_name":"Shiyue Rong","orcid":"https://orcid.org/0000-0001-5288-925X"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Shiyue Rong","raw_affiliation_strings":["Department of Computer Science, University of California at Irvine, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0001-5288-925X","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California at Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055054547","display_name":"Weisheng Wang","orcid":"https://orcid.org/0000-0002-2202-7787"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Weisheng Wang","raw_affiliation_strings":["Department of Computer Science, University of California at Irvine, Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California at Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066791665","display_name":"Viet Ly","orcid":null},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Viet Ly","raw_affiliation_strings":["Department of Computer Science, University of California at Irvine, Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California at Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009107322","display_name":"Pasha Khosravi","orcid":"https://orcid.org/0000-0002-0539-0541"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pasha Khosravi","raw_affiliation_strings":["Department of Computer Science, University of California at Irvine, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-0539-0541","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California at Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019840747","display_name":"William Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"William C. Wu","raw_affiliation_strings":["Department of Computer Science, University of California at Irvine, Irvine, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California at Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101715380","display_name":"Jing Chen","orcid":"https://orcid.org/0000-0001-7549-7339"},"institutions":[{"id":"https://openalex.org/I111599522","display_name":"Jiangnan University","ror":"https://ror.org/04mkzax54","country_code":"CN","type":"education","lineage":["https://openalex.org/I111599522"]},{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jing Chen","raw_affiliation_strings":["Department of Computer Science, University of California at Irvine, Irvine, CA, USA","School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China"],"raw_orcid":"https://orcid.org/0000-0001-7549-7339","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California at Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]},{"raw_affiliation_string":"School of Artificial Intelligence and Computer Science, Jiangnan University, Wuxi, China","institution_ids":["https://openalex.org/I111599522"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028882289","display_name":"Wayne B. Hayes","orcid":"https://orcid.org/0000-0002-3310-6042"},"institutions":[{"id":"https://openalex.org/I204250578","display_name":"University of California, Irvine","ror":"https://ror.org/04gyf1771","country_code":"US","type":"education","lineage":["https://openalex.org/I204250578"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Wayne B. Hayes","raw_affiliation_strings":["Department of Computer Science, University of California at Irvine, Irvine, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-3310-6042","affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of California at Irvine, Irvine, CA, USA","institution_ids":["https://openalex.org/I204250578"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.1679,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.44416349,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"26","issue":"5","first_page":"1117","last_page":"1128"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9902999997138977,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9889000058174133,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.712289035320282},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6415934562683105},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5140865445137024},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.4857962131500244},{"id":"https://openalex.org/keywords/interaction-network","display_name":"Interaction network","score":0.4794527590274811},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.44773194193840027},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.44033175706863403},{"id":"https://openalex.org/keywords/simulated-annealing","display_name":"Simulated annealing","score":0.4111030101776123},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4029541015625},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.359211802482605},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.18447867035865784},{"id":"https://openalex.org/keywords/computer-network","display_name":"Computer network","score":0.1133902370929718},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11284646391868591}],"concepts":[{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.712289035320282},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6415934562683105},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5140865445137024},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.4857962131500244},{"id":"https://openalex.org/C55105296","wikidata":"https://www.wikidata.org/wiki/Q841382","display_name":"Interaction network","level":3,"score":0.4794527590274811},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.44773194193840027},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.44033175706863403},{"id":"https://openalex.org/C126980161","wikidata":"https://www.wikidata.org/wiki/Q863783","display_name":"Simulated annealing","level":2,"score":0.4111030101776123},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4029541015625},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.359211802482605},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.18447867035865784},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.1133902370929718},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11284646391868591},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tevc.2022.3153286","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tevc.2022.3153286","pdf_url":null,"source":{"id":"https://openalex.org/S93787993","display_name":"IEEE Transactions on Evolutionary Computation","issn_l":"1089-778X","issn":["1089-778X","1941-0026"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Evolutionary Computation","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.6499999761581421}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":37,"referenced_works":["https://openalex.org/W1520757484","https://openalex.org/W1527318567","https://openalex.org/W1854214752","https://openalex.org/W1988494396","https://openalex.org/W1990200948","https://openalex.org/W2005631746","https://openalex.org/W2011039300","https://openalex.org/W2024060531","https://openalex.org/W2037433020","https://openalex.org/W2039616005","https://openalex.org/W2055391643","https://openalex.org/W2072019839","https://openalex.org/W2079482620","https://openalex.org/W2091312128","https://openalex.org/W2121343862","https://openalex.org/W2128613007","https://openalex.org/W2139361324","https://openalex.org/W2147566730","https://openalex.org/W2153929049","https://openalex.org/W2157312249","https://openalex.org/W2161443911","https://openalex.org/W2171255489","https://openalex.org/W2306608239","https://openalex.org/W2350845555","https://openalex.org/W2407405674","https://openalex.org/W2483438189","https://openalex.org/W2587997094","https://openalex.org/W2594030753","https://openalex.org/W2601638040","https://openalex.org/W2738984681","https://openalex.org/W2899942534","https://openalex.org/W2963706488","https://openalex.org/W2964024205","https://openalex.org/W4225096104","https://openalex.org/W4293282039","https://openalex.org/W6631064309","https://openalex.org/W6639055396"],"related_works":["https://openalex.org/W2961085424","https://openalex.org/W4306674287","https://openalex.org/W4224009465","https://openalex.org/W4286629047","https://openalex.org/W4306321456","https://openalex.org/W2564509174","https://openalex.org/W2391158047","https://openalex.org/W2114222301","https://openalex.org/W2135241887","https://openalex.org/W2006120266"],"abstract_inverted_index":{"All":[0],"life":[1],"on":[2,90,167,184],"Earth":[3],"is":[4,69,155],"related,":[5],"so":[6],"that":[7],"some":[8],"molecular":[9],"interactions":[10,23],"are":[11],"common":[12,22],"across":[13],"almost":[14],"all":[15],"living":[16],"cells,":[17],"with":[18],"the":[19,37,56,70,74,96,107,126,141,150,158,164,168,177],"number":[20],"of":[21,42,50,58,72,128,131],"increasing":[24],"as":[25,149,181,183],"we":[26,35,121,145],"look":[27],"at":[28],"more":[29,80,137],"closely":[30,43],"related":[31,44],"species.":[32],"In":[33],"particular,":[34],"expect":[36],"protein\u2013protein":[38],"interaction":[39,179],"(PPI)":[40],"networks":[41,81,175,187],"species":[45,63],"to":[46,93,105,111,157],"share":[47],"high":[48],"levels":[49],"similarity.":[51],"This":[52],"similarity":[53,76,133],"may":[54],"facilitate":[55],"transfer":[57],"functional":[59],"knowledge":[60],"between":[61,77,134],"model":[62],"and":[64,98,123,171],"human.":[65],"Multiple":[66],"network":[67,87,113,118],"alignment":[68,88],"process":[71],"uncovering":[73],"connection":[75],"three":[78,135],"or":[79,136],"simultaneously.":[82],"Existing":[83],"algorithms":[84],"for":[85],"multiple":[86,117],"rely":[89],"sequence":[91],"similarities":[92],"help":[94],"drive":[95,116],"alignments,":[97],"no":[99],"comprehensive":[100],"study":[101],"has":[102],"been":[103],"done":[104],"determine":[106],"most":[108],"effective":[109],"ways":[110],"utilize":[112],"connectivity\u2014network":[114],"topology\u2014to":[115],"alignment.":[119],"Here,":[120],"devise":[122],"empirically":[124],"test":[125,163],"efficacy":[127],"several":[129],"measures":[130,165],"topological":[132],"networks.":[138],"To":[139],"evolve":[140],"alignments":[142],"toward":[143],"optimal,":[144],"use":[146],"simulated":[147],"annealing":[148],"search":[151],"algorithm":[152],"since":[153],"it":[154],"agnostic":[156],"objective":[159],"being":[160],"optimized.":[161],"We":[162],"both":[166],"partially":[169],"synthetic":[170],"highly":[172],"similar":[173],"PPI":[174,186],"from":[176,188],"integrated":[178],"database,":[180],"well":[182],"real":[185],"a":[189],"recent":[190],"BioGRID":[191],"release.":[192]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1}],"updated_date":"2026-03-27T05:58:40.876381","created_date":"2025-10-10T00:00:00"}
