{"id":"https://openalex.org/W2805684679","doi":"https://doi.org/10.1109/tevc.2018.2844116","title":"Multiobjective Metaheuristic to Design RNA Sequences","display_name":"Multiobjective Metaheuristic to Design RNA Sequences","publication_year":2018,"publication_date":"2018-06-04","ids":{"openalex":"https://openalex.org/W2805684679","doi":"https://doi.org/10.1109/tevc.2018.2844116","mag":"2805684679"},"language":"en","primary_location":{"id":"doi:10.1109/tevc.2018.2844116","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tevc.2018.2844116","pdf_url":null,"source":{"id":"https://openalex.org/S93787993","display_name":"IEEE Transactions on Evolutionary Computation","issn_l":"1089-778X","issn":["1089-778X","1941-0026"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Evolutionary Computation","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/10362/146177","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009435283","display_name":"\u00c1lvaro Rubio\u2010Largo","orcid":"https://orcid.org/0000-0003-2999-4304"},"institutions":[{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":true,"raw_author_name":"Alvaro Rubio-Largo","raw_affiliation_strings":["NOVA Information Management School, Universidade Nova de Lisboa, Lisbon, Portugal"],"affiliations":[{"raw_affiliation_string":"NOVA Information Management School, Universidade Nova de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I83558840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056916227","display_name":"Leonardo Vanneschi","orcid":"https://orcid.org/0000-0003-4732-3328"},"institutions":[{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Leonardo Vanneschi","raw_affiliation_strings":["NOVA Information Management School, Universidade Nova de Lisboa, Lisbon, Portugal"],"affiliations":[{"raw_affiliation_string":"NOVA Information Management School, Universidade Nova de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I83558840"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087976149","display_name":"Mauro Castelli","orcid":"https://orcid.org/0000-0002-8793-1451"},"institutions":[{"id":"https://openalex.org/I83558840","display_name":"Universidade Nova de Lisboa","ror":"https://ror.org/02xankh89","country_code":"PT","type":"education","lineage":["https://openalex.org/I83558840"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"Mauro Castelli","raw_affiliation_strings":["NOVA Information Management School, Universidade Nova de Lisboa, Lisbon, Portugal"],"affiliations":[{"raw_affiliation_string":"NOVA Information Management School, Universidade Nova de Lisboa, Lisbon, Portugal","institution_ids":["https://openalex.org/I83558840"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049408851","display_name":"Miguel A. Vega\u2010Rodr\u00edguez","orcid":"https://orcid.org/0000-0002-3003-758X"},"institutions":[{"id":"https://openalex.org/I80606768","display_name":"Universidad de Extremadura","ror":"https://ror.org/0174shg90","country_code":"ES","type":"education","lineage":["https://openalex.org/I80606768"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Miguel A. Vega-Rodriguez","raw_affiliation_strings":["Department of Computer and Communications Technologies, University of Extremadura, C\u00e1ceres, Spain"],"affiliations":[{"raw_affiliation_string":"Department of Computer and Communications Technologies, University of Extremadura, C\u00e1ceres, Spain","institution_ids":["https://openalex.org/I80606768"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5009435283"],"corresponding_institution_ids":["https://openalex.org/I83558840"],"apc_list":null,"apc_paid":null,"fwci":0.8377,"has_fulltext":false,"cited_by_count":30,"citation_normalized_percentile":{"value":0.72336887,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"23","issue":"1","first_page":"156","last_page":"169"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9933000206947327,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10432","display_name":"DNA and Nucleic Acid Chemistry","score":0.9778000116348267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.6691072583198547},{"id":"https://openalex.org/keywords/nucleic-acid-secondary-structure","display_name":"Nucleic acid secondary structure","score":0.5718609094619751},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5043188333511353},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.4954122304916382},{"id":"https://openalex.org/keywords/inverse","display_name":"Inverse","score":0.4637032151222229},{"id":"https://openalex.org/keywords/evolutionary-algorithm","display_name":"Evolutionary algorithm","score":0.44488954544067383},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3923357129096985},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37797579169273376},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.36124616861343384},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2027950882911682},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11686700582504272},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09784162044525146},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.09447333216667175}],"concepts":[{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6691072583198547},{"id":"https://openalex.org/C85468374","wikidata":"https://www.wikidata.org/wiki/Q6589957","display_name":"Nucleic acid secondary structure","level":4,"score":0.5718609094619751},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5043188333511353},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.4954122304916382},{"id":"https://openalex.org/C207467116","wikidata":"https://www.wikidata.org/wiki/Q4385666","display_name":"Inverse","level":2,"score":0.4637032151222229},{"id":"https://openalex.org/C159149176","wikidata":"https://www.wikidata.org/wiki/Q14489129","display_name":"Evolutionary algorithm","level":2,"score":0.44488954544067383},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3923357129096985},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37797579169273376},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.36124616861343384},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2027950882911682},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11686700582504272},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09784162044525146},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.09447333216667175},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tevc.2018.2844116","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tevc.2018.2844116","pdf_url":null,"source":{"id":"https://openalex.org/S93787993","display_name":"IEEE Transactions on Evolutionary Computation","issn_l":"1089-778X","issn":["1089-778X","1941-0026"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Evolutionary Computation","raw_type":"journal-article"},{"id":"pmh:oai:run.unl.pt:10362/146177","is_oa":true,"landing_page_url":"http://hdl.handle.net/10362/146177","pdf_url":null,"source":{"id":"https://openalex.org/S4306400678","display_name":"Universidade Nova de Lisboa's Repository (Universidade Nova de Lisboa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I83558840","host_organization_name":"Universidade Nova de Lisboa","host_organization_lineage":["https://openalex.org/I83558840"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"}],"best_oa_location":{"id":"pmh:oai:run.unl.pt:10362/146177","is_oa":true,"landing_page_url":"http://hdl.handle.net/10362/146177","pdf_url":null,"source":{"id":"https://openalex.org/S4306400678","display_name":"Universidade Nova de Lisboa's Repository (Universidade Nova de Lisboa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I83558840","host_organization_name":"Universidade Nova de Lisboa","host_organization_lineage":["https://openalex.org/I83558840"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1202009969","display_name":null,"funder_award_id":"TIN2016-76259-P","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":59,"referenced_works":["https://openalex.org/W27581661","https://openalex.org/W123710484","https://openalex.org/W1494280056","https://openalex.org/W1509531727","https://openalex.org/W1543796220","https://openalex.org/W1559047570","https://openalex.org/W1574869393","https://openalex.org/W1585711251","https://openalex.org/W1790782659","https://openalex.org/W1846204438","https://openalex.org/W1860906034","https://openalex.org/W1934768785","https://openalex.org/W1969390039","https://openalex.org/W1970424517","https://openalex.org/W1984675364","https://openalex.org/W2006402229","https://openalex.org/W2010746375","https://openalex.org/W2012593394","https://openalex.org/W2013805110","https://openalex.org/W2016971241","https://openalex.org/W2022485595","https://openalex.org/W2033830649","https://openalex.org/W2036594035","https://openalex.org/W2063594852","https://openalex.org/W2086561953","https://openalex.org/W2089019240","https://openalex.org/W2090546075","https://openalex.org/W2103250001","https://openalex.org/W2106334424","https://openalex.org/W2111342151","https://openalex.org/W2111976294","https://openalex.org/W2116661285","https://openalex.org/W2122944508","https://openalex.org/W2125615424","https://openalex.org/W2125899728","https://openalex.org/W2126105956","https://openalex.org/W2134489577","https://openalex.org/W2135373808","https://openalex.org/W2136346399","https://openalex.org/W2141670298","https://openalex.org/W2143407915","https://openalex.org/W2148339059","https://openalex.org/W2148599336","https://openalex.org/W2154241726","https://openalex.org/W2155871507","https://openalex.org/W2176307068","https://openalex.org/W2210383493","https://openalex.org/W2223951905","https://openalex.org/W2276634778","https://openalex.org/W2331703335","https://openalex.org/W2335480701","https://openalex.org/W2489219000","https://openalex.org/W2557894284","https://openalex.org/W2561599208","https://openalex.org/W3099817196","https://openalex.org/W4229773738","https://openalex.org/W4301850763","https://openalex.org/W6653277019","https://openalex.org/W6731351848"],"related_works":["https://openalex.org/W2147993839","https://openalex.org/W1840103016","https://openalex.org/W54859794","https://openalex.org/W2064941026","https://openalex.org/W2359508303","https://openalex.org/W1983151649","https://openalex.org/W4385457841","https://openalex.org/W2581348958","https://openalex.org/W4367048159","https://openalex.org/W962838231"],"abstract_inverted_index":{"RNA":[0,15,88,99,110,129,163],"inverse":[1,100,114],"folding":[2,101,115],"problem":[3,7],"is":[4,11,95,150,173],"a":[5,20,34,62,135],"bioinformatics":[6],"where":[8],"the":[9,49,54,74,105],"objective":[10,66],"to":[12,32,86],"find":[13],"an":[14],"sequence":[16,123],"that":[17,148],"folds":[18],"into":[19],"given":[21],"target":[22,57],"secondary":[23,111],"structure.":[24],"In":[25,43],"this":[26,41,44,93],"paper,":[27],"we":[28,51,146],"use":[29],"evolutionary":[30,128],"computation":[31],"solve":[33],"new":[35,45],"and":[36,58,64,79,131,144,165],"innovative":[37],"multiobjective":[38,46,84],"definition":[39,47],"of":[40,48,73,116,152,159,162,171],"problem.":[42],"problem,":[50],"have":[52],"considered":[53],"similarity":[55],"between":[56],"predicted":[59],"structures":[60],"as":[61,108],"constraint,":[63],"three":[65],"functions:":[67],"1)":[68],"partition":[69],"function":[70],"(free":[71],"energy":[72],"ensemble);":[75],"2)":[76],"ensemble":[77],"diversity;":[78],"3)":[80],"nucleotides":[81],"composition.":[82],"The":[83,168],"metaheuristic":[85],"design":[87],"sequences":[89],"(m2dRNAs)":[90],"proposed":[91],"in":[92,104,122,157],"paper":[94],"compared":[96],"against":[97],"other":[98],"methods":[102],"published":[103],"literature,":[106],"such":[107],"RNAinverse,":[109],"structure":[112],"designer,":[113],"RNA,":[117],"MODENA,":[118],"NUPACK,":[119],"fRNAkenstein,":[120],"dynamics":[121],"space":[124],"optimization,":[125],"RNAiFOLD,":[126],"antaRNA,":[127],"design,":[130],"Eterna":[132],"players.":[133],"After":[134],"comprehensive":[136],"comparative":[137],"study":[138],"on":[139],"two":[140],"well-known":[141],"benchmarks":[142],"(Rfam":[143],"Eterna100),":[145],"conclude":[147],"m2dRNAs":[149,172],"capable":[151],"obtaining":[153],"very":[154],"promising":[155],"results":[156],"terms":[158],"both":[160],"quality":[161],"designs":[164],"required":[166],"runtime.":[167],"source":[169],"code":[170],"available":[174],"at":[175],"http://arco.unex.es/arl/m2dRNAs-source_code.zip.":[176]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3}],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
