{"id":"https://openalex.org/W3080797970","doi":"https://doi.org/10.1109/tetci.2020.3014923","title":"EMODMI: A Multi-Objective Optimization Based Method to Identify Disease Modules","display_name":"EMODMI: A Multi-Objective Optimization Based Method to Identify Disease Modules","publication_year":2020,"publication_date":"2020-08-21","ids":{"openalex":"https://openalex.org/W3080797970","doi":"https://doi.org/10.1109/tetci.2020.3014923","mag":"3080797970"},"language":"en","primary_location":{"id":"doi:10.1109/tetci.2020.3014923","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tetci.2020.3014923","pdf_url":null,"source":{"id":"https://openalex.org/S4210210251","display_name":"IEEE Transactions on Emerging Topics in Computational Intelligence","issn_l":"2471-285X","issn":["2471-285X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Emerging Topics in Computational Intelligence","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058755242","display_name":"Ye Tian","orcid":"https://orcid.org/0000-0002-3487-5126"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Ye Tian","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053655443","display_name":"Xiaochun Su","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaochun Su","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071754273","display_name":"Yansen Su","orcid":"https://orcid.org/0000-0002-3855-7133"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yansen Su","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028634381","display_name":"Xingyi Zhang","orcid":"https://orcid.org/0000-0002-5052-000X"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xingyi Zhang","raw_affiliation_strings":["Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China"],"affiliations":[{"raw_affiliation_string":"Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, School of Computer Science and Technology, Anhui University, Hefei, China","institution_ids":["https://openalex.org/I143868143"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5058755242"],"corresponding_institution_ids":["https://openalex.org/I143868143"],"apc_list":null,"apc_paid":null,"fwci":3.761,"has_fulltext":false,"cited_by_count":65,"citation_normalized_percentile":{"value":0.94511759,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"5","issue":"4","first_page":"570","last_page":"582"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9900000095367432,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.7859020829200745},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.7099587321281433},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6779439449310303},{"id":"https://openalex.org/keywords/association","display_name":"Association (psychology)","score":0.5120487809181213},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5073575377464294},{"id":"https://openalex.org/keywords/complex-disease","display_name":"Complex disease","score":0.4268021583557129},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42234617471694946},{"id":"https://openalex.org/keywords/genetic-programming","display_name":"Genetic programming","score":0.41132792830467224},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.40252605080604553},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.17127114534378052},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13111400604248047},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.08266523480415344}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.7859020829200745},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.7099587321281433},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6779439449310303},{"id":"https://openalex.org/C142853389","wikidata":"https://www.wikidata.org/wiki/Q744778","display_name":"Association (psychology)","level":2,"score":0.5120487809181213},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5073575377464294},{"id":"https://openalex.org/C3018605307","wikidata":"https://www.wikidata.org/wiki/Q200779","display_name":"Complex disease","level":3,"score":0.4268021583557129},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42234617471694946},{"id":"https://openalex.org/C110332635","wikidata":"https://www.wikidata.org/wiki/Q629498","display_name":"Genetic programming","level":2,"score":0.41132792830467224},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.40252605080604553},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.17127114534378052},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13111400604248047},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.08266523480415344},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tetci.2020.3014923","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tetci.2020.3014923","pdf_url":null,"source":{"id":"https://openalex.org/S4210210251","display_name":"IEEE Transactions on Emerging Topics in Computational Intelligence","issn_l":"2471-285X","issn":["2471-285X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Emerging Topics in Computational Intelligence","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1124769320","display_name":null,"funder_award_id":"61876123","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1182606078","display_name":null,"funder_award_id":"U1804262","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1591254444","display_name":null,"funder_award_id":"61822301","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2004334719","display_name":null,"funder_award_id":"61906001","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2089016108","display_name":null,"funder_award_id":"PAL-N201805","funder_id":"https://openalex.org/F4320335661","funder_display_name":"State Key Laboratory of Synthetical Automation for Process Industries"},{"id":"https://openalex.org/G2494574696","display_name":null,"funder_award_id":"61672033","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3303591644","display_name":null,"funder_award_id":"2008085QF294","funder_id":"https://openalex.org/F4320334897","funder_display_name":"Natural Science Foundation of Anhui Province"},{"id":"https://openalex.org/G3932071694","display_name":null,"funder_award_id":"1808085J06","funder_id":"https://openalex.org/F4320334897","funder_display_name":"Natural Science Foundation of Anhui Province"},{"id":"https://openalex.org/G5815338096","display_name":null,"funder_award_id":"2018AAA0100105","funder_id":"https://openalex.org/F4320322108","funder_display_name":"Ministry of Science and Technology"},{"id":"https://openalex.org/G61320532","display_name":null,"funder_award_id":"1908085QF271","funder_id":"https://openalex.org/F4320334897","funder_display_name":"Natural Science Foundation of Anhui Province"},{"id":"https://openalex.org/G8219466152","display_name":null,"funder_award_id":"KJ2019A0029","funder_id":"https://openalex.org/F4320326664","funder_display_name":"Anhui Provincial Department of Education"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322108","display_name":"Ministry of Science and Technology","ror":"https://ror.org/032e49973"},{"id":"https://openalex.org/F4320326664","display_name":"Anhui Provincial Department of Education","ror":null},{"id":"https://openalex.org/F4320334897","display_name":"Natural Science Foundation of Anhui Province","ror":null},{"id":"https://openalex.org/F4320335661","display_name":"State Key Laboratory of Synthetical Automation for Process Industries","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":60,"referenced_works":["https://openalex.org/W23729838","https://openalex.org/W93566489","https://openalex.org/W1668065109","https://openalex.org/W1833634424","https://openalex.org/W1964434253","https://openalex.org/W1964716329","https://openalex.org/W1971092174","https://openalex.org/W1989684700","https://openalex.org/W2013885787","https://openalex.org/W2017532337","https://openalex.org/W2036369755","https://openalex.org/W2044740902","https://openalex.org/W2045971059","https://openalex.org/W2047031939","https://openalex.org/W2048296798","https://openalex.org/W2056782561","https://openalex.org/W2062533676","https://openalex.org/W2077487563","https://openalex.org/W2083045667","https://openalex.org/W2087736493","https://openalex.org/W2098156552","https://openalex.org/W2103017472","https://openalex.org/W2111384508","https://openalex.org/W2112090702","https://openalex.org/W2112811019","https://openalex.org/W2117573774","https://openalex.org/W2119220491","https://openalex.org/W2126052291","https://openalex.org/W2126105956","https://openalex.org/W2130410032","https://openalex.org/W2131161884","https://openalex.org/W2151041575","https://openalex.org/W2153280946","https://openalex.org/W2153654820","https://openalex.org/W2156695919","https://openalex.org/W2157581457","https://openalex.org/W2161167143","https://openalex.org/W2168775836","https://openalex.org/W2318518019","https://openalex.org/W2337819340","https://openalex.org/W2506039404","https://openalex.org/W2508622936","https://openalex.org/W2568436683","https://openalex.org/W2576908058","https://openalex.org/W2591638377","https://openalex.org/W2617210014","https://openalex.org/W2619358879","https://openalex.org/W2639370877","https://openalex.org/W2763143157","https://openalex.org/W2778301454","https://openalex.org/W2784142616","https://openalex.org/W2801407531","https://openalex.org/W2804501929","https://openalex.org/W2946739419","https://openalex.org/W4298161285","https://openalex.org/W6603830284","https://openalex.org/W6669921165","https://openalex.org/W6676670023","https://openalex.org/W6744985368","https://openalex.org/W6843920793"],"related_works":["https://openalex.org/W2352440174","https://openalex.org/W2968285896","https://openalex.org/W4309440960","https://openalex.org/W2102997898","https://openalex.org/W1662819506","https://openalex.org/W2062168445","https://openalex.org/W2381504162","https://openalex.org/W2348940229","https://openalex.org/W4367596775","https://openalex.org/W4318240128"],"abstract_inverted_index":{"After":[0],"decades":[1],"of":[2,17,29,40,51,69,120,130,172],"research,":[3],"it":[4],"has":[5],"been":[6,35],"widely":[7],"recognized":[8],"that":[9],"complex":[10,30],"diseases":[11],"are":[12],"caused":[13],"by":[14,21,49,133],"the":[15,26,38,45,53,66,82,118,121,124,127,131,141,145,150,163,170],"dysfunction":[16],"biological":[18],"systems":[19],"induced":[20],"disease-associated":[22],"genes.":[23],"To":[24],"understand":[25],"molecular":[27],"basis":[28],"diseases,":[31],"many":[32,62],"efforts":[33],"have":[34],"devoted":[36],"to":[37,110,140],"identification":[39,160],"disease-related":[41],"gene":[42,147],"modules":[43],"in":[44,169],"last":[46],"two":[47],"decades,":[48],"means":[50],"exploring":[52],"interaction":[54],"networks":[55],"constructed":[56],"based":[57,91],"on":[58,144],"heterogeneous":[59],"information.":[60],"However,":[61],"existing":[63,184],"approaches":[64],"ignore":[65],"personalized":[67,113],"features":[68],"disease":[70,96,108,125,158,165,173],"samples":[71],"and":[72,126,174],"cannot":[73],"identify":[74],"a":[75,103,135],"dense":[76],"module":[77,97,122,132,159,166],"having":[78],"strong":[79],"association":[80,119],"with":[81,123],"disease.":[83],"In":[84],"this":[85],"paper,":[86],"an":[87],"evolutionary":[88],"multi-objective":[89,136],"optimization":[90],"approach":[92,101,152],"is":[93,153,167],"proposed":[94,100,151],"for":[95,106],"identification.":[98],"The":[99],"constructs":[102],"sample-specific":[104],"network":[105],"each":[107],"sample":[109],"involve":[111],"their":[112],"features,":[114],"then":[115],"optimizes":[116],"both":[117],"intra-link":[128],"density":[129],"using":[134],"genetic":[137],"algorithm.":[138],"According":[139],"experimental":[142],"results":[143],"asthma":[146],"expression":[148],"dataset,":[149],"superior":[154],"over":[155],"some":[156],"state-of-the-art":[157],"approaches.":[161,185],"Furthermore,":[162],"identified":[164],"used":[168],"classification":[171,180],"control":[175],"samples,":[176],"which":[177],"obtains":[178],"lower":[179],"error":[181],"rate":[182],"than":[183]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":25},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
