{"id":"https://openalex.org/W2996523866","doi":"https://doi.org/10.1109/tencon.2019.8929482","title":"Time and Space Efficient Optimal Pairwise Sequence Alignment using GPU","display_name":"Time and Space Efficient Optimal Pairwise Sequence Alignment using GPU","publication_year":2019,"publication_date":"2019-10-01","ids":{"openalex":"https://openalex.org/W2996523866","doi":"https://doi.org/10.1109/tencon.2019.8929482","mag":"2996523866"},"language":"en","primary_location":{"id":"doi:10.1109/tencon.2019.8929482","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tencon.2019.8929482","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON)","raw_type":"proceedings-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063024083","display_name":"Ardhendu Sarkar","orcid":"https://orcid.org/0000-0002-4555-3026"},"institutions":[{"id":"https://openalex.org/I98365261","display_name":"Indian Institute of Engineering Science and Technology, Shibpur","ror":"https://ror.org/02ytfzr55","country_code":"IN","type":"education","lineage":["https://openalex.org/I98365261"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Ardhendu Sarkar","raw_affiliation_strings":["Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India","institution_ids":["https://openalex.org/I98365261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063050417","display_name":"Kinjal Ray","orcid":null},"institutions":[{"id":"https://openalex.org/I98365261","display_name":"Indian Institute of Engineering Science and Technology, Shibpur","ror":"https://ror.org/02ytfzr55","country_code":"IN","type":"education","lineage":["https://openalex.org/I98365261"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Kinjal Ray","raw_affiliation_strings":["Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India","institution_ids":["https://openalex.org/I98365261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071413587","display_name":"Debaroti Chowdhury","orcid":null},"institutions":[{"id":"https://openalex.org/I98365261","display_name":"Indian Institute of Engineering Science and Technology, Shibpur","ror":"https://ror.org/02ytfzr55","country_code":"IN","type":"education","lineage":["https://openalex.org/I98365261"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Debaroti Chowdhury","raw_affiliation_strings":["Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India","institution_ids":["https://openalex.org/I98365261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068930368","display_name":"Kishan Sahu","orcid":null},"institutions":[{"id":"https://openalex.org/I98365261","display_name":"Indian Institute of Engineering Science and Technology, Shibpur","ror":"https://ror.org/02ytfzr55","country_code":"IN","type":"education","lineage":["https://openalex.org/I98365261"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Kishan Sahu","raw_affiliation_strings":["Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India","institution_ids":["https://openalex.org/I98365261"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056093544","display_name":"Solanki Kundu","orcid":null},"institutions":[{"id":"https://openalex.org/I98365261","display_name":"Indian Institute of Engineering Science and Technology, Shibpur","ror":"https://ror.org/02ytfzr55","country_code":"IN","type":"education","lineage":["https://openalex.org/I98365261"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Solanki Kundu","raw_affiliation_strings":["Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India","institution_ids":["https://openalex.org/I98365261"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5016231688","display_name":"Surajeet Ghosh","orcid":"https://orcid.org/0000-0003-1428-9530"},"institutions":[{"id":"https://openalex.org/I98365261","display_name":"Indian Institute of Engineering Science and Technology, Shibpur","ror":"https://ror.org/02ytfzr55","country_code":"IN","type":"education","lineage":["https://openalex.org/I98365261"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Surajeet Ghosh","raw_affiliation_strings":["Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India"],"affiliations":[{"raw_affiliation_string":"Dept. of Computer Science & Technology, Indian Institute of Engineering Science & Technology, Shibpur, Howrah, India","institution_ids":["https://openalex.org/I98365261"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5063024083"],"corresponding_institution_ids":["https://openalex.org/I98365261"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.12756596,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":null,"issue":null,"first_page":"423","last_page":"428"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9799000024795532,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8431581258773804},{"id":"https://openalex.org/keywords/graphics-processing-unit","display_name":"Graphics processing unit","score":0.7157691121101379},{"id":"https://openalex.org/keywords/cuda","display_name":"CUDA","score":0.6472043991088867},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.6289074420928955},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.5136920809745789},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5035561919212341},{"id":"https://openalex.org/keywords/hardware-acceleration","display_name":"Hardware acceleration","score":0.4839092195034027},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.46479031443595886},{"id":"https://openalex.org/keywords/field-programmable-gate-array","display_name":"Field-programmable gate array","score":0.42820703983306885},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.42765021324157715},{"id":"https://openalex.org/keywords/embedded-system","display_name":"Embedded system","score":0.192694753408432},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17447414994239807},{"id":"https://openalex.org/keywords/computer-graphics","display_name":"Computer graphics (images)","score":0.1197839081287384}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8431581258773804},{"id":"https://openalex.org/C2779851693","wikidata":"https://www.wikidata.org/wiki/Q183484","display_name":"Graphics processing unit","level":2,"score":0.7157691121101379},{"id":"https://openalex.org/C2778119891","wikidata":"https://www.wikidata.org/wiki/Q477690","display_name":"CUDA","level":2,"score":0.6472043991088867},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.6289074420928955},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.5136920809745789},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5035561919212341},{"id":"https://openalex.org/C13164978","wikidata":"https://www.wikidata.org/wiki/Q600158","display_name":"Hardware acceleration","level":3,"score":0.4839092195034027},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.46479031443595886},{"id":"https://openalex.org/C42935608","wikidata":"https://www.wikidata.org/wiki/Q190411","display_name":"Field-programmable gate array","level":2,"score":0.42820703983306885},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.42765021324157715},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.192694753408432},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17447414994239807},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.1197839081287384},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1109/tencon.2019.8929482","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tencon.2019.8929482","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"TENCON 2019 - 2019 IEEE Region 10 Conference (TENCON)","raw_type":"proceedings-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1556105006","https://openalex.org/W2011652244","https://openalex.org/W2029195137","https://openalex.org/W2055043387","https://openalex.org/W2074231493","https://openalex.org/W2087064593","https://openalex.org/W2106882534","https://openalex.org/W2151831732","https://openalex.org/W2182727943","https://openalex.org/W2183872730","https://openalex.org/W2585524407","https://openalex.org/W2586315890","https://openalex.org/W4236236547"],"related_works":["https://openalex.org/W1963859303","https://openalex.org/W2364044215","https://openalex.org/W2389600408","https://openalex.org/W240129890","https://openalex.org/W3048701459","https://openalex.org/W2149078538","https://openalex.org/W2080146221","https://openalex.org/W2370314112","https://openalex.org/W1912958759","https://openalex.org/W2792081825"],"abstract_inverted_index":{"Sequence":[0],"alignments":[1],"are":[2,97,101],"currently":[3],"gaining":[4],"close":[5],"attention":[6],"due":[7],"to":[8,50,65,103,108,129,148,181],"their":[9],"great":[10],"impact":[11],"on":[12],"the":[13,25,34,67,70,105,109,137],"quality":[14],"aspects":[15],"of":[16,27,37,69,112,163,174],"life":[17],"such":[18,131],"as":[19],"facilitating":[20],"early":[21],"disease":[22],"diagnosis,":[23],"identifying":[24],"characteristics":[26],"a":[28,42,54,118],"newly":[29],"discovered":[30],"sequence,":[31],"etc..":[32],"With":[33],"rapid":[35],"growth":[36,111],"genomic":[38],"data,":[39],"searching":[40],"for":[41,122],"sequence":[43,62,186],"homology":[44],"over":[45],"huge":[46],"databases":[47],"is":[48,155],"unable":[49,102],"produce":[51],"results":[52],"within":[53],"realistic":[55],"time.":[56],"Hence,":[57],"it":[58],"demands":[59],"an":[60],"efficient":[61],"alignment":[63,125,138,187],"accelerator":[64],"improve":[66],"performance":[68,171],"system.":[71],"Though":[72],"some":[73],"popular":[74],"acceleration":[75],"platforms,":[76],"like":[77],"supercomputers,":[78],"Very":[79],"Large":[80],"Scale":[81],"Integration":[82],"(VLSI)":[83],"chip,":[84],"Graphics":[85],"Processing":[86],"Unit":[87],"(GPUs)":[88],"and":[89,160,176],"Field":[90],"Programmable":[91],"Gate":[92],"Arrays":[93],"(FPGAs)":[94],"based":[95],"devices":[96],"available,":[98],"but":[99],"they":[100],"meet":[104],"intended":[106],"requirement":[107,178],"current":[110],"genome":[113],"database.":[114,133],"This":[115,152],"paper":[116],"presents":[117],"parallel":[119,150],"dynamic":[120,146],"approach":[121,135],"global":[123],"pairwise":[124,185],"algorithm":[126],"using":[127,157],"GPU":[128,142],"handle":[130],"large":[132],"The":[134,165],"performs":[136],"procedure":[139],"in":[140,172],"CUDA-enabled":[141],"platform":[143],"by":[144],"creating":[145],"threads":[147],"perform":[149],"execution.":[151],"GPU-based":[153,183],"implementation":[154],"tested":[156],"pseudorandom":[158],"database":[159],"various":[161],"length":[162],"sequences.":[164],"execution":[166],"result":[167],"shows":[168],"reasonably":[169],"better":[170],"terms":[173],"time":[175],"space":[177],"with":[179],"respect":[180],"existing":[182],"optimal":[184],"approaches.":[188]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}