{"id":"https://openalex.org/W4401357387","doi":"https://doi.org/10.1109/tcyb.2024.3430369","title":"Decomposition\u2013Estimation\u2013Reconstruction: An Automatic and Accurate Neuron Extraction Paradigm","display_name":"Decomposition\u2013Estimation\u2013Reconstruction: An Automatic and Accurate Neuron Extraction Paradigm","publication_year":2024,"publication_date":"2024-08-06","ids":{"openalex":"https://openalex.org/W4401357387","doi":"https://doi.org/10.1109/tcyb.2024.3430369","pmid":"https://pubmed.ncbi.nlm.nih.gov/39106131"},"language":"en","primary_location":{"id":"doi:10.1109/tcyb.2024.3430369","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcyb.2024.3430369","pdf_url":null,"source":{"id":"https://openalex.org/S4210191041","display_name":"IEEE Transactions on Cybernetics","issn_l":"2168-2267","issn":["2168-2267","2168-2275"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Cybernetics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5082780960","display_name":"Peixian Zhuang","orcid":"https://orcid.org/0000-0002-7143-9569"},"institutions":[{"id":"https://openalex.org/I92403157","display_name":"University of Science and Technology Beijing","ror":"https://ror.org/02egmk993","country_code":"CN","type":"education","lineage":["https://openalex.org/I92403157"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Peixian Zhuang","raw_affiliation_strings":["Key Laboratory of Knowledge Automation for Industrial Processes, Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-7143-9569","affiliations":[{"raw_affiliation_string":"Key Laboratory of Knowledge Automation for Industrial Processes, Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China","institution_ids":["https://openalex.org/I92403157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074215202","display_name":"Jiangyun Li","orcid":"https://orcid.org/0000-0003-2288-7901"},"institutions":[{"id":"https://openalex.org/I92403157","display_name":"University of Science and Technology Beijing","ror":"https://ror.org/02egmk993","country_code":"CN","type":"education","lineage":["https://openalex.org/I92403157"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiangyun Li","raw_affiliation_strings":["Key Laboratory of Knowledge Automation for Industrial Processes, Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0003-2288-7901","affiliations":[{"raw_affiliation_string":"Key Laboratory of Knowledge Automation for Industrial Processes, Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China","institution_ids":["https://openalex.org/I92403157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100703199","display_name":"Qing Li","orcid":"https://orcid.org/0000-0002-6361-5008"},"institutions":[{"id":"https://openalex.org/I92403157","display_name":"University of Science and Technology Beijing","ror":"https://ror.org/02egmk993","country_code":"CN","type":"education","lineage":["https://openalex.org/I92403157"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Li","raw_affiliation_strings":["Key Laboratory of Knowledge Automation for Industrial Processes, Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China"],"raw_orcid":"https://orcid.org/0000-0002-6361-5008","affiliations":[{"raw_affiliation_string":"Key Laboratory of Knowledge Automation for Industrial Processes, Ministry of Education, School of Automation and Electrical Engineering, University of Science and Technology Beijing, Beijing, China","institution_ids":["https://openalex.org/I92403157"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081396646","display_name":"Lei Cai","orcid":"https://orcid.org/0000-0003-4811-5854"},"institutions":[{"id":"https://openalex.org/I4210163247","display_name":"Henan Institute of Science and Technology","ror":"https://ror.org/0578f1k82","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210163247"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Cai","raw_affiliation_strings":["School of Artificial Intelligence, Henan Institute of Science and Technology, Xinxiang, China"],"raw_orcid":"https://orcid.org/0000-0003-4811-5854","affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Henan Institute of Science and Technology, Xinxiang, China","institution_ids":["https://openalex.org/I4210163247"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008386708","display_name":"Sam Kwong","orcid":"https://orcid.org/0000-0001-7484-7261"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sam Kwong","raw_affiliation_strings":["Department of Computing and Decision Sciences, Lingnan University, Hong Kong, SAR, China"],"raw_orcid":"https://orcid.org/0000-0001-7484-7261","affiliations":[{"raw_affiliation_string":"Department of Computing and Decision Sciences, Lingnan University, Hong Kong, SAR, China","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":2.7785,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.91527933,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"54","issue":"10","first_page":"5938","last_page":"5951"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.7968999743461609,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.7968999743461609,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.7804999947547913,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.5970016121864319},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5399892330169678},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.527111828327179},{"id":"https://openalex.org/keywords/decomposition","display_name":"Decomposition","score":0.5034298300743103},{"id":"https://openalex.org/keywords/estimation","display_name":"Estimation","score":0.4627411961555481},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3789583742618561},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.11269432306289673},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10780411958694458},{"id":"https://openalex.org/keywords/chromatography","display_name":"Chromatography","score":0.09685683250427246}],"concepts":[{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.5970016121864319},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5399892330169678},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.527111828327179},{"id":"https://openalex.org/C124681953","wikidata":"https://www.wikidata.org/wiki/Q339062","display_name":"Decomposition","level":2,"score":0.5034298300743103},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.4627411961555481},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3789583742618561},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.11269432306289673},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10780411958694458},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.09685683250427246},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1109/tcyb.2024.3430369","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcyb.2024.3430369","pdf_url":null,"source":{"id":"https://openalex.org/S4210191041","display_name":"IEEE Transactions on Cybernetics","issn_l":"2168-2267","issn":["2168-2267","2168-2275"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Cybernetics","raw_type":"journal-article"},{"id":"pmid:39106131","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39106131","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on cybernetics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G311659069","display_name":null,"funder_award_id":"62273033","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4514755209","display_name":null,"funder_award_id":"62171252","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5642961893","display_name":null,"funder_award_id":"00007764","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7211531681","display_name":null,"funder_award_id":"00007764","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1994574914","https://openalex.org/W1995360097","https://openalex.org/W2011181254","https://openalex.org/W2011592399","https://openalex.org/W2026034143","https://openalex.org/W2047123483","https://openalex.org/W2103304264","https://openalex.org/W2107617294","https://openalex.org/W2118718620","https://openalex.org/W2119047398","https://openalex.org/W2125188192","https://openalex.org/W2128254161","https://openalex.org/W2145962650","https://openalex.org/W2153663612","https://openalex.org/W2168212473","https://openalex.org/W2231009150","https://openalex.org/W2256362396","https://openalex.org/W2331376995","https://openalex.org/W2396267364","https://openalex.org/W2397643408","https://openalex.org/W2740543610","https://openalex.org/W2754636875","https://openalex.org/W2805271873","https://openalex.org/W2900331589","https://openalex.org/W2936929958","https://openalex.org/W2948991860","https://openalex.org/W2963074844","https://openalex.org/W2996868574","https://openalex.org/W3008534764","https://openalex.org/W3008839601","https://openalex.org/W3101842671","https://openalex.org/W3103790380","https://openalex.org/W3104639521","https://openalex.org/W3159280308","https://openalex.org/W3199680565","https://openalex.org/W3203936785","https://openalex.org/W3205339884","https://openalex.org/W4292363360","https://openalex.org/W4308236852","https://openalex.org/W4388505256","https://openalex.org/W6677402965","https://openalex.org/W6677759377","https://openalex.org/W6720067036"],"related_works":["https://openalex.org/W2576994247","https://openalex.org/W2608353378","https://openalex.org/W4249206767","https://openalex.org/W2563559453","https://openalex.org/W2380059383","https://openalex.org/W4224278052","https://openalex.org/W2063679720","https://openalex.org/W2382330008","https://openalex.org/W2033914206","https://openalex.org/W2042327336"],"abstract_inverted_index":{"The":[0,123],"extraction":[1,24,52,183],"of":[2,19,59,90,94,111,130,154,191],"spatiotemporal":[3],"neuron":[4,23,51,79,96,113,132,148,182],"activity":[5],"from":[6,184],"calcium":[7,171,185],"imaging":[8,172,186],"videos":[9,187],"plays":[10],"a":[11,73,77,135,139,163],"crucial":[12],"role":[13],"in":[14,162,195],"unraveling":[15],"the":[16,65,69,95,105,108,112,127,131,152,167,176,189],"coding":[17],"properties":[18],"neurons.":[20,156],"While":[21],"existing":[22],"approaches":[25],"have":[26],"shown":[27],"promising":[28],"results,":[29],"disturbing":[30],"and":[31,34,49,62,76,81,92,101,119,199],"scattering":[32],"background":[33,75],"unused":[35],"depth":[36,128],"still":[37],"impede":[38],"their":[39],"performance.":[40],"To":[41],"address":[42],"these":[43],"limitations,":[44],"we":[45],"develop":[46],"an":[47],"automatic":[48],"accurate":[50,147],"paradigm,":[53],"dubbed":[54],"as":[55,134],"decomposition\u2013estimation\u2013reconstruction":[56],"(DER),":[57],"consisting":[58],"D-procedure,":[60],"E-procedure,":[61],"R-procedure.":[63],"Specifically,":[64],"D-procedure":[66],"first":[67],"decomposes":[68],"raw":[70],"data":[71,173],"into":[72,138],"low-rank":[74],"sparse":[78],"signal,":[80],"regularizes":[82],"<inline-formula":[83],"xmlns:mml=\"http://www.w3.org/1998/Math/MathML\"":[84],"xmlns:xlink=\"http://www.w3.org/1999/xlink\">":[85],"<tex-math":[86],"notation=\"LaTeX\">$L_{0}$":[87],"</tex-math></inline-formula>-norm":[88],"priors":[89],"intensity":[91],"gradient":[93],"signal":[97,114,133],"to":[98,150,174],"suppress":[99],"blurring":[100],"artifact":[102],"effects.":[103],"Then,":[104],"E-procedure":[106],"estimates":[107],"depth-dependent":[109],"transmission":[110],"based":[115],"on":[116,181],"its":[117],"bright":[118],"dark":[120],"channel":[121],"priors.":[122],"R-procedure":[124],"finally":[125],"integrates":[126],"estimation":[129],"content-importance":[136],"weight":[137],"constrained":[140],"non-negative":[141],"matrix":[142],"decomposition":[143],"framework,":[144],"which":[145],"facilitates":[146],"locations":[149],"boost":[151],"quality":[153],"extracted":[155],"These":[157],"three":[158],"procedures":[159],"are":[160],"coupled":[161],"cascade":[164],"manner,":[165],"where":[166],"former":[168],"copes":[169],"with":[170],"facilitate":[175],"subsequent":[177],"one.":[178],"Comprehensive":[179],"experiments":[180],"demonstrate":[188],"superiority":[190],"our":[192],"DER":[193],"paradigm":[194],"both":[196],"qualitative":[197],"results":[198],"quantitative":[200],"assessments":[201],"over":[202],"state-of-the-art":[203],"methods.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":3}],"updated_date":"2025-12-26T23:08:49.675405","created_date":"2025-10-10T00:00:00"}
