{"id":"https://openalex.org/W3092486253","doi":"https://doi.org/10.1109/tcyb.2020.3022852","title":"IMS-CDA: Prediction of CircRNA-Disease Associations From the Integration of Multisource Similarity Information With Deep Stacked Autoencoder Model","display_name":"IMS-CDA: Prediction of CircRNA-Disease Associations From the Integration of Multisource Similarity Information With Deep Stacked Autoencoder Model","publication_year":2020,"publication_date":"2020-10-07","ids":{"openalex":"https://openalex.org/W3092486253","doi":"https://doi.org/10.1109/tcyb.2020.3022852","mag":"3092486253","pmid":"https://pubmed.ncbi.nlm.nih.gov/33027025"},"language":"en","primary_location":{"id":"doi:10.1109/tcyb.2020.3022852","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcyb.2020.3022852","pdf_url":null,"source":{"id":"https://openalex.org/S4210191041","display_name":"IEEE Transactions on Cybernetics","issn_l":"2168-2267","issn":["2168-2267","2168-2275"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Cybernetics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100436059","display_name":"Lei Wang","orcid":"https://orcid.org/0000-0003-0184-307X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]},{"id":"https://openalex.org/I4210159676","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210159676"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Wang","raw_affiliation_strings":["College of Information Science and Engineering, Zaozhuang University, Shandong, China","Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China"],"raw_orcid":"https://orcid.org/0000-0003-0184-307X","affiliations":[{"raw_affiliation_string":"College of Information Science and Engineering, Zaozhuang University, Shandong, China","institution_ids":["https://openalex.org/I4210159676"]},{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I4210106108","display_name":"Xinjiang Technical Institute of Physics & Chemistry","ror":"https://ror.org/00x44h034","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China"],"raw_orcid":"https://orcid.org/0000-0003-1266-2696","affiliations":[{"raw_affiliation_string":"Xinjiang Technical Institute of Physics and Chemistry, Chinese Academy of Sciences, Urumqi, China","institution_ids":["https://openalex.org/I19820366","https://openalex.org/I4210106108"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100393871","display_name":"Jianqiang Li","orcid":"https://orcid.org/0000-0002-2208-962X"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jian-Qiang Li","raw_affiliation_strings":["College of Computer and Software Engineering, Shenzhen University, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-2208-962X","affiliations":[{"raw_affiliation_string":"College of Computer and Software Engineering, Shenzhen University, Shenzhen, China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5017713277","display_name":"Yu\u2010An Huang","orcid":"https://orcid.org/0000-0002-5346-2394"},"institutions":[{"id":"https://openalex.org/I14243506","display_name":"Hong Kong Polytechnic University","ror":"https://ror.org/0030zas98","country_code":"HK","type":"education","lineage":["https://openalex.org/I14243506"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Yu-An Huang","raw_affiliation_strings":["Department of Computing, Hong Kong Polytechnic University, Hong Kong"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing, Hong Kong Polytechnic University, Hong Kong","institution_ids":["https://openalex.org/I14243506"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":3.5039,"has_fulltext":false,"cited_by_count":64,"citation_normalized_percentile":{"value":0.94233223,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":100},"biblio":{"volume":"51","issue":"11","first_page":"5522","last_page":"5531"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9790999889373779,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10062","display_name":"MicroRNA in disease regulation","score":0.933899998664856,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autoencoder","display_name":"Autoencoder","score":0.8838882446289062},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.6940659880638123},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5392903089523315},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5150980353355408},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44233065843582153},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.38776007294654846},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34021222591400146},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3216736912727356},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23217272758483887}],"concepts":[{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.8838882446289062},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.6940659880638123},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5392903089523315},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5150980353355408},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44233065843582153},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.38776007294654846},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34021222591400146},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3216736912727356},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23217272758483887},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1109/tcyb.2020.3022852","is_oa":false,"landing_page_url":"https://doi.org/10.1109/tcyb.2020.3022852","pdf_url":null,"source":{"id":"https://openalex.org/S4210191041","display_name":"IEEE Transactions on Cybernetics","issn_l":"2168-2267","issn":["2168-2267","2168-2275"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310319808","host_organization_name":"Institute of Electrical and Electronics Engineers","host_organization_lineage":["https://openalex.org/P4310319808"],"host_organization_lineage_names":["Institute of Electrical and Electronics Engineers"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE Transactions on Cybernetics","raw_type":"journal-article"},{"id":"pmid:33027025","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33027025","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"IEEE transactions on cybernetics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1472446628","display_name":null,"funder_award_id":"2019M653804","funder_id":"https://openalex.org/F4320321543","funder_display_name":"China Postdoctoral Science Foundation"},{"id":"https://openalex.org/G3588239447","display_name":null,"funder_award_id":"61702444","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G53239543","display_name":null,"funder_award_id":"2018-XBQNXZ-B-008","funder_id":"https://openalex.org/F4320328015","funder_display_name":"West Light Foundation of the Chinese Academy of Sciences"},{"id":"https://openalex.org/G82793888","display_name":null,"funder_award_id":"61722212","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"},{"id":"https://openalex.org/F4320325428","display_name":"Zaozhuang University","ror":"https://ror.org/05x21tp94"},{"id":"https://openalex.org/F4320328015","display_name":"West Light Foundation of the Chinese Academy of Sciences","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1967087625","https://openalex.org/W1975909559","https://openalex.org/W1990748933","https://openalex.org/W1991082489","https://openalex.org/W2000730994","https://openalex.org/W2008976996","https://openalex.org/W2018780815","https://openalex.org/W2029316659","https://openalex.org/W2029838682","https://openalex.org/W2031593782","https://openalex.org/W2034587103","https://openalex.org/W2042484777","https://openalex.org/W2058835062","https://openalex.org/W2065260846","https://openalex.org/W2104960492","https://openalex.org/W2132202037","https://openalex.org/W2141222510","https://openalex.org/W2150757437","https://openalex.org/W2248620004","https://openalex.org/W2279412964","https://openalex.org/W2295038166","https://openalex.org/W2410272781","https://openalex.org/W2461928526","https://openalex.org/W2510327939","https://openalex.org/W2549965650","https://openalex.org/W2558825838","https://openalex.org/W2754595644","https://openalex.org/W2774509753","https://openalex.org/W2800008025","https://openalex.org/W2807602500","https://openalex.org/W2888239540","https://openalex.org/W2894749196","https://openalex.org/W2897712722","https://openalex.org/W2898991725","https://openalex.org/W2899436082","https://openalex.org/W2923922207","https://openalex.org/W2957180077","https://openalex.org/W2964951118","https://openalex.org/W2981316968","https://openalex.org/W2991743543","https://openalex.org/W2995337846","https://openalex.org/W3002064451","https://openalex.org/W3004779847","https://openalex.org/W4240367950"],"related_works":["https://openalex.org/W3013693939","https://openalex.org/W2159052453","https://openalex.org/W2566616303","https://openalex.org/W3131327266","https://openalex.org/W4297051394","https://openalex.org/W2752972570","https://openalex.org/W2734887215","https://openalex.org/W2803255133","https://openalex.org/W2669956259","https://openalex.org/W4249005693"],"abstract_inverted_index":{"Emerging":[0],"evidence":[1],"indicates":[2],"that":[3,211],"circular":[4],"RNA":[5],"(circRNA)":[6],"has":[7,213],"been":[8],"an":[9,66,214],"indispensable":[10],"role":[11],"in":[12,139],"the":[13,63,104,107,111,125,129,140,150,157,162,167,183,188,193,199],"pathogenesis":[14],"of":[15,43,65,119,134,159,192],"human":[16,44],"complex":[17,45],"diseases":[18],"and":[19,41,58,68,113,121,123,172,177,222],"many":[20],"critical":[21],"biological":[22,49,98,228],"processes.":[23],"Using":[24],"circRNA":[25],"as":[26],"a":[27,35,84],"molecular":[28],"marker":[29],"or":[30],"therapeutic":[31],"target":[32],"opens":[33],"up":[34],"new":[36,85,219],"avenue":[37],"for":[38,72,227],"our":[39],"treatment":[40],"detection":[42],"diseases.":[46],"The":[47],"traditional":[48],"experiments,":[50],"however,":[51],"are":[52,59],"usually":[53],"limited":[54],"to":[55,90,217],"small":[56],"scale":[57],"time":[60],"consuming,":[61],"so":[62],"development":[64],"effective":[67],"feasible":[69],"computational-based":[70,86],"approach":[71],"predicting":[73],"circRNA-disease":[74,93,196,220],"associations":[75,94,197,221],"is":[76],"increasingly":[77],"favored.":[78],"In":[79,187],"this":[80],"study,":[81],"we":[82],"propose":[83],"method,":[87],"called":[88],"IMS-CDA,":[89],"predict":[91,218],"potential":[92],"based":[95],"on":[96,161],"multisource":[97],"information.":[99],"More":[100],"specifically,":[101],"IMS-CDA":[102,145,181,212],"combines":[103],"information":[105],"from":[106],"disease":[108,120],"semantic":[109],"similarity,":[110],"Jaccard":[112],"Gaussian":[114],"interaction":[115],"profile":[116],"kernel":[117],"similarity":[118],"circRNA,":[122],"extracts":[124],"hidden":[126],"features":[127],"using":[128],"stacked":[130],"autoencoder":[131],"(SAE)":[132],"algorithm":[133],"deep":[135],"learning.":[136],"After":[137],"training":[138],"rotation":[141],"forest":[142],"(RF)":[143],"classifier,":[144],"achieves":[146,182],"88.08%":[147],"area":[148],"under":[149],"ROC":[151],"curve":[152],"with":[153,166,198],"88.36%":[154],"accuracy":[155],"at":[156],"sensitivity":[158],"91.38%":[160],"CIRCR2Disease":[163],"dataset.":[164],"Compared":[165],"state-of-the-art":[168],"support":[169],"vector":[170],"machine":[171],"K":[173],"-nearest":[174],"neighbor":[175],"models":[176],"different":[178],"descriptor":[179],"models,":[180],"best":[184],"overall":[185],"performance.":[186],"case":[189],"studies,":[190],"eight":[191],"top":[194],"15":[195],"highest":[200],"prediction":[201],"score":[202],"were":[203],"confirmed":[204],"by":[205],"recent":[206],"literature.":[207],"These":[208],"results":[209],"indicated":[210],"outstanding":[215],"ability":[216],"can":[223],"provide":[224],"reliable":[225],"candidates":[226],"experiments.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":6},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":16},{"year":2022,"cited_by_count":20},{"year":2021,"cited_by_count":11}],"updated_date":"2026-07-22T07:51:19.307946","created_date":"2025-10-10T00:00:00"}
